ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36i06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete cds Length = 1433 Score = 204 bits (103), Expect = 4e-50 Identities = 110/111 (99%), Gaps = 1/111 (0%) Strand = Plus / Plus Query: 9 taagccccaatcccaccaccgcgcgccgctggtgctcggcgcgatggcgcagaaggacgc 68 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 37 taagccccaatcccaccaccgc-cgccgctggtgctcggcgcgatggcgcagaaggacgc 95 Query: 69 caccaatggcaacggcgccaccacgcgcccgccgcccacgccctcccccat 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96 caccaatggcaacggcgccaccacgcgcccgccgcccacgccctcccccat 146
>gb|AE011626.1| Xanthomonas axonopodis pv. citri str. 306, section 4 of 469 of the complete genome Length = 11366 Score = 44.1 bits (22), Expect = 0.092 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 ccaccacgcgcccgccgcccac 107 |||||||||||||||||||||| Sbjct: 2278 ccaccacgcgcccgccgcccac 2299
>gb|AC166562.2| Spironucleus vortens clone JGIBAWF-9F12, complete sequence Length = 41261 Score = 44.1 bits (22), Expect = 0.092 Identities = 25/26 (96%) Strand = Plus / Minus Query: 21 ccaccaccgcgcgccgctggtgctcg 46 |||||||||||||| ||||||||||| Sbjct: 21052 ccaccaccgcgcgcagctggtgctcg 21027
>gb|BT018975.1| Zea mays clone Contig404.F mRNA sequence Length = 1467 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ggcaacggcgccaccacgcgc 96 ||||||||||||||||||||| Sbjct: 166 ggcaacggcgccaccacgcgc 186
>gb|AC165259.2| Mus musculus BAC clone RP23-146P7 from chromosome 17, complete sequence Length = 252045 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 cccgccgcccacgccctcccc 116 ||||||||||||||||||||| Sbjct: 48295 cccgccgcccacgccctcccc 48315
>ref|XM_467231.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2240 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctggtgctcggcgcgatggc 56 |||||||||||||||||||| Sbjct: 1453 ctggtgctcggcgcgatggc 1472
>gb|AY431002.1| Uncultured prokaryote clone FII_C1 ribulose-1,5-bisphosphate carboxylase/oxygenase form II large subunit (cbbM) gene, partial cds Length = 278 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 caccaccgcgcgccgctggt 41 |||||||||||||||||||| Sbjct: 54 caccaccgcgcgccgctggt 35
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 tggtgctcggcgcgatggcg 57 |||||||||||||||||||| Sbjct: 1379584 tggtgctcggcgcgatggcg 1379603
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 39 ggtgctcggcgcgatggcgcagaaggacgcca 70 |||||||| || ||||||||||||||| |||| Sbjct: 9409146 ggtgctcgacgggatggcgcagaaggaggcca 9409177 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 87 caccacgcgcccgccgcccacgccctc 113 |||||| ||||||||||| |||||||| Sbjct: 9409200 caccacccgcccgccgccgacgccctc 9409226
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 cggcgccaccacgcgcccgccgcc 104 |||||||||||||||| ||||||| Sbjct: 91536 cggcgccaccacgcgcacgccgcc 91513
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 tggtgctcggcgcgatggcg 57 |||||||||||||||||||| Sbjct: 346309 tggtgctcggcgcgatggcg 346328
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 tggtgctcggcgcgatggcg 57 |||||||||||||||||||| Sbjct: 66740 tggtgctcggcgcgatggcg 66759
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 39 ggtgctcggcgcgatggcgcagaaggacgcca 70 |||||||| || ||||||||||||||| |||| Sbjct: 106546 ggtgctcgacgggatggcgcagaaggaggcca 106577 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 87 caccacgcgcccgccgcccacgccctc 113 |||||| ||||||||||| |||||||| Sbjct: 106600 caccacccgcccgccgccgacgccctc 106626
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gcgccaccacgcgcccgccg 102 |||||||||||||||||||| Sbjct: 3012260 gcgccaccacgcgcccgccg 3012279
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgcccacgccctcccccat 119 |||||||||||||||||||| Sbjct: 25220429 ccgcccacgccctcccccat 25220448
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 39 ggtgctcggcgcgatggcgcagaaggacgcca 70 |||||||| || ||||||||||||||| |||| Sbjct: 9407267 ggtgctcgacgggatggcgcagaaggaggcca 9407298 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 87 caccacgcgcccgccgcccacgccctc 113 |||||| ||||||||||| |||||||| Sbjct: 9407321 caccacccgcccgccgccgacgccctc 9407347
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctggtgctcggcgcgatggc 56 |||||||||||||||||||| Sbjct: 28331976 ctggtgctcggcgcgatggc 28331957
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 gcgcgatggcgcagaaggac 66 |||||||||||||||||||| Sbjct: 6148634 gcgcgatggcgcagaaggac 6148653 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 90 cacgcgcccgccgcccacgccct 112 |||||| |||||||||||||||| Sbjct: 8452623 cacgcggccgccgcccacgccct 8452645
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ctcggcgcgatggcgcagaa 62 |||||||||||||||||||| Sbjct: 2738501 ctcggcgcgatggcgcagaa 2738520
>gb|AE005124.1| Halobacterium sp. NRC-1 section 155 of 170 of the complete genome Length = 12016 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cgcgcccgccgcccacgccc 111 |||||||||||||||||||| Sbjct: 4634 cgcgcccgccgcccacgccc 4653
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccgcccacgccctcccccat 119 |||||||||||||||||||| Sbjct: 85552 ccgcccacgccctcccccat 85571
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ctggtgctcggcgcgatggc 56 |||||||||||||||||||| Sbjct: 123733 ctggtgctcggcgcgatggc 123714
>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full insert sequence Length = 1811 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 39 ggtgctcggcgcgatggcgcagaaggacgcca 70 |||||||| || ||||||||||||||| |||| Sbjct: 476 ggtgctcgacgggatggcgcagaaggaggcca 507 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 87 caccacgcgcccgccgcccacgccctc 113 |||||| ||||||||||| |||||||| Sbjct: 530 caccacccgcccgccgccgacgccctc 556
>dbj|AK065840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036C22, full insert sequence Length = 2240 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ctggtgctcggcgcgatggc 56 |||||||||||||||||||| Sbjct: 1453 ctggtgctcggcgcgatggc 1472
>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full insert sequence Length = 1411 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 39 ggtgctcggcgcgatggcgcagaaggacgcca 70 |||||||| || ||||||||||||||| |||| Sbjct: 87 ggtgctcgacgggatggcgcagaaggaggcca 118 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 87 caccacgcgcccgccgcccacgccctc 113 |||||| ||||||||||| |||||||| Sbjct: 141 caccacccgcccgccgccgacgccctc 167
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 gcccgccgcccacgccctccccca 118 ||||||||||||||||| |||||| Sbjct: 3375526 gcccgccgcccacgcccaccccca 3375503
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 gctcggcgcgatggcgcag 60 ||||||||||||||||||| Sbjct: 3109825 gctcggcgcgatggcgcag 3109843
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 90 cacgcgcccgccgcccacgccct 112 ||||||| ||||||||||||||| Sbjct: 3537077 cacgcgcacgccgcccacgccct 3537099 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 cgcgcccgccgcccacgcc 110 ||||||||||||||||||| Sbjct: 1295891 cgcgcccgccgcccacgcc 1295873
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 gctggtgctcggcgcgatg 54 ||||||||||||||||||| Sbjct: 2789167 gctggtgctcggcgcgatg 2789149
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 27 ccgcgcgccgctggtgctcggcg 49 |||||||||||| |||||||||| Sbjct: 2795440 ccgcgcgccgctcgtgctcggcg 2795418
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 cgcgcccgccgcccacgcc 110 ||||||||||||||||||| Sbjct: 2688525 cgcgcccgccgcccacgcc 2688507 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 acgcgcccgccgcccacgc 109 ||||||||||||||||||| Sbjct: 2104729 acgcgcccgccgcccacgc 2104747 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 cacgcgcccgccgcccacg 108 ||||||||||||||||||| Sbjct: 964720 cacgcgcccgccgcccacg 964738
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 27 ccgcgcgccgctggtgctcggcg 49 |||||||||||| |||||||||| Sbjct: 4022935 ccgcgcgccgctcgtgctcggcg 4022913
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcccacgccctccccca 118 ||||||||||||||||||| Sbjct: 102367 ccgcccacgccctccccca 102349
>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0313E01, complete sequence Length = 149215 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 92 cgcgcccgccgcccacgccctcc 114 |||||||||||||| |||||||| Sbjct: 70043 cgcgcccgccgccctcgccctcc 70065
>gb|AY386264.1| Orf virus strain OV-SA00, complete genome Length = 139962 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 cggcgccaccacgcgcccg 99 ||||||||||||||||||| Sbjct: 55932 cggcgccaccacgcgcccg 55914
>gb|AY386263.1| Orf virus strain OV-IA82, complete genome Length = 137241 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 cggcgccaccacgcgcccg 99 ||||||||||||||||||| Sbjct: 54803 cggcgccaccacgcgcccg 54785
>gb|DQ472026.1| Nautilus macromphalus mitochondrion, complete genome Length = 16258 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 actaagccccaatcccacc 25 ||||||||||||||||||| Sbjct: 13538 actaagccccaatcccacc 13556
>emb|AL353799.14| Human DNA sequence from clone RP5-1019A8 on chromosome 20 Contains the 5' end of the ATP9A gene for ATPase, class II, type 9A (KIAA0611), ESTs, STSs, GSSs and a CpG island, complete sequence Length = 35138 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 89 ccacgcgcccgccgcccacgccc 111 |||||||||| |||||||||||| Sbjct: 26555 ccacgcgccccccgcccacgccc 26577
>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0093J03, complete sequence Length = 200626 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 cgcgcccgccgcccacgcc 110 ||||||||||||||||||| Sbjct: 43445 cgcgcccgccgcccacgcc 43463
>emb|Y14018.1|PACZR Pseudomonas aeruginosa czrR, czrC, czrB, czrA genes, ORF5 and partial ORF6 Length = 9630 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 37 ctggtgctcggcgcgatggcgca 59 |||| |||||||||||||||||| Sbjct: 679 ctggcgctcggcgcgatggcgca 657
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 cgctggtgctcggcgcgat 53 ||||||||||||||||||| Sbjct: 3000617 cgctggtgctcggcgcgat 3000599
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 cacgcgcccgccgcccacg 108 ||||||||||||||||||| Sbjct: 2283422 cacgcgcccgccgcccacg 2283440 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 cgcgcccgccgcccacgcc 110 ||||||||||||||||||| Sbjct: 868916 cgcgcccgccgcccacgcc 868898 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 acgcgcccgccgcccacgc 109 ||||||||||||||||||| Sbjct: 266316 acgcgcccgccgcccacgc 266334
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 27 ccgcgcgccgctggtgctcggcg 49 |||||||||||| |||||||||| Sbjct: 3729544 ccgcgcgccgctcgtgctcggcg 3729522
>emb|AJ417910.1|SOL417910 Streptomyces olivaceoviridis ngcE gene, ngcF gene, ngcG gene and ngcR gene Length = 5639 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 cgctggtgctcggcgcgatggcg 57 |||||||||||||| |||||||| Sbjct: 3448 cgctggtgctcggctcgatggcg 3470
>emb|AJ272313.1|HVU272313 Hordeum vulgare mRNA for gamma tubulin (gtub gene) Length = 2039 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 95 gcccgccgcccacgccctccccc 117 ||||||||||| ||||||||||| Sbjct: 68 gcccgccgcccccgccctccccc 90
>gb|DQ357071.1| Saccharothrix espanaensis caffeic acid biosynthetic gene locus, partial sequence Length = 6049 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 29 gcgcgccgctggtgctcggcgcg 51 ||||||||| ||||||||||||| Sbjct: 5283 gcgcgccgcaggtgctcggcgcg 5305
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 87 caccacgcgcccgccgcccacgc 109 ||||||||||||||||| ||||| Sbjct: 4593525 caccacgcgcccgccgcgcacgc 4593547
>gb|DQ184476.1| Orf virus strain NZ2, complete genome Length = 137820 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 cggcgccaccacgcgcccg 99 ||||||||||||||||||| Sbjct: 55187 cggcgccaccacgcgcccg 55169
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 acgcgcccgccgcccacgc 109 ||||||||||||||||||| Sbjct: 2058724 acgcgcccgccgcccacgc 2058706 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 cacgcgcccgccgcccacg 108 ||||||||||||||||||| Sbjct: 1831091 cacgcgcccgccgcccacg 1831109 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 cgcgcccgccgcccacgcc 110 ||||||||||||||||||| Sbjct: 851984 cgcgcccgccgcccacgcc 851966
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 agccccaatcccaccaccg 29 ||||||||||||||||||| Sbjct: 3501145 agccccaatcccaccaccg 3501127
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 92 cgcgcccgccgcccacgccctcc 114 |||||||||||||| |||||||| Sbjct: 25194773 cgcgcccgccgccctcgccctcc 25194795 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 cgcgcccgccgcccacgcc 110 ||||||||||||||||||| Sbjct: 20736384 cgcgcccgccgcccacgcc 20736402
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ccaccaccgcgcgccgctg 39 ||||||||||||||||||| Sbjct: 7308727 ccaccaccgcgcgccgctg 7308709
>gb|AE004679.1| Pseudomonas aeruginosa PAO1, section 240 of 529 of the complete genome Length = 10042 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 37 ctggtgctcggcgcgatggcgca 59 |||| |||||||||||||||||| Sbjct: 8476 ctggcgctcggcgcgatggcgca 8498
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431F01 Length = 143209 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 21 ccaccaccgcgcgccgctg 39 ||||||||||||||||||| Sbjct: 110157 ccaccaccgcgcgccgctg 110139
>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic acid decarboxylase, complete cds Length = 1053 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 87 caccacgcgcccgccgcccacgccctc 113 |||||| ||||||||||| |||||||| Sbjct: 42 caccacccgcccgccgccgacgccctc 68
>dbj|AK119725.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-H04, full insert sequence Length = 1000 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 agccccaatcccaccaccg 29 ||||||||||||||||||| Sbjct: 61 agccccaatcccaccaccg 79
>dbj|AK104011.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B07, full insert sequence Length = 1039 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 agccccaatcccaccaccg 29 ||||||||||||||||||| Sbjct: 104 agccccaatcccaccaccg 122
>dbj|AK071641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106A11, full insert sequence Length = 1081 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 agccccaatcccaccaccg 29 ||||||||||||||||||| Sbjct: 141 agccccaatcccaccaccg 159
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 29 gcgcgccgctggtgctcggcgcg 51 |||||||||||||| |||||||| Sbjct: 3554451 gcgcgccgctggtggtcggcgcg 3554473
>gb|AY104952.1| Zea mays PCO092342 mRNA sequence Length = 1825 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 39 ggtgctcggcgcgatggcgcagaagga 65 ||||||| |||||||||||||||||| Sbjct: 470 ggtgctccacgcgatggcgcagaagga 496
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 cgcgcccgccgcccacgcc 110 ||||||||||||||||||| Sbjct: 2138744 cgcgcccgccgcccacgcc 2138762
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 27 ccgcgcgccgctggtgctcggcg 49 |||||||||||| |||||||||| Sbjct: 3422240 ccgcgcgccgctcgtgctcggcg 3422218
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 27 ccgcgcgccgctggtgctcggcg 49 |||||||||||||||| |||||| Sbjct: 1512464 ccgcgcgccgctggtgatcggcg 1512486 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 gccgctggtgctcggcgcg 51 ||||||||||||||||||| Sbjct: 1192376 gccgctggtgctcggcgcg 1192358
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 caccacgcgcccgccgccc 105 ||||||||||||||||||| Sbjct: 801024 caccacgcgcccgccgccc 801006
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 92 cgcgcccgccgcccacgccctcc 114 |||||||||||||| |||||||| Sbjct: 25513431 cgcgcccgccgccctcgccctcc 25513453 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 cgcgcccgccgcccacgcc 110 ||||||||||||||||||| Sbjct: 21046619 cgcgcccgccgcccacgcc 21046637
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 agccccaatcccaccaccg 29 ||||||||||||||||||| Sbjct: 3501090 agccccaatcccaccaccg 3501072
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 agccccaatcccaccaccg 29 ||||||||||||||||||| Sbjct: 16073 agccccaatcccaccaccg 16055
>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116371 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 agccccaatcccaccaccg 29 ||||||||||||||||||| Sbjct: 30769 agccccaatcccaccaccg 30787 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 927,270 Number of Sequences: 3902068 Number of extensions: 927270 Number of successful extensions: 73102 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68017 Number of HSP's gapped (non-prelim): 5084 length of query: 122 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 101 effective length of database: 17,151,101,840 effective search space: 1732261285840 effective search space used: 1732261285840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
