ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36h07 |
|---|---|
| Clone Library Name | barley_pub |
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 36.2 bits (82), Expect = 0.084 Identities = 18/51 (35%), Positives = 19/51 (37%) Frame = -3 Query: 354 PRHDLHENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQH 202 P H H + A HH H H H P H H PHH H P H Sbjct: 174 PHHHHHHHHAPHHHHH---HHHAPHHHHH-----HHHAPHHHHHHHHAPHH 216 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/46 (34%), Positives = 17/46 (36%) Frame = -3 Query: 339 HENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQH 202 H + A HH H H H P H H PHH H P H Sbjct: 169 HHHHAPHHHHH---HHHAPHHHHH-----HHHAPHHHHHHHHAPHH 206 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/51 (33%), Positives = 18/51 (35%) Frame = -3 Query: 354 PRHDLHENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQH 202 P H H + A HH H H H P H H PHH H H Sbjct: 184 PHHHHHHHHAPHHHHH---HHHAPHHHHH-----HHHAPHHHHHHHHGHHH 226 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/50 (28%), Positives = 16/50 (32%) Frame = -3 Query: 348 HDLHENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQHE 199 HD H + HH H H H H H HH H H+ Sbjct: 292 HDAHHHHHHHHDAHHHHHHHDAHHHHH---------HHHDAHHHHHHHHD 332 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/49 (28%), Positives = 16/49 (32%) Frame = -3 Query: 348 HDLHENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQH 202 HD H + HH H H H H H + HH H H Sbjct: 272 HDAHHHHHHHHDAHHHHHHHHDAHHHHHHH--HDAHHHHHHHDAHHHHH 318 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/50 (28%), Positives = 16/50 (32%) Frame = -3 Query: 348 HDLHENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQHE 199 HD H + HH H H H H H HH H H+ Sbjct: 282 HDAHHHHHHHHDAHHHHHHHHDAHHHH---------HHHDAHHHHHHHHD 322 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/50 (28%), Positives = 16/50 (32%) Frame = -3 Query: 348 HDLHENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQHE 199 HD H + HH H H H H H HH H H+ Sbjct: 262 HDAHHHHHHHHDAHHHHHHHHDAHHHH--------HHHHDAHHHHHHHHD 303 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/50 (28%), Positives = 16/50 (32%) Frame = -3 Query: 348 HDLHENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQHE 199 HD H + HH H H H H H HH H H+ Sbjct: 252 HDAHHHHHHHHDAHHHHHHHHDAHHHH--------HHHHDAHHHHHHHHD 293 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/42 (30%), Positives = 15/42 (35%) Frame = -3 Query: 348 HDLHENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRH 223 HD H + HH H H H H H + HH H Sbjct: 311 HDAHHHHHHHHDAHHHHHHHHDAHHHHHHH--HDAHHHHHHH 350 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 6/50 (12%) Frame = -3 Query: 354 PRHDLH------ENTARHHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRH 223 P H+ H E+ HH+ H H H H H P PHH H Sbjct: 72 PHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHP-------PHHHHH 114
>MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-associated factor| mot1) (Modifier of transcription 1) Length = 1953 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = +3 Query: 6 ARGGRLFNEPAASHN-TSKVEREEGELSP--NGDFEEDNFVPFEDGASKTKE 152 A GG + N P + N TS V++EE E P NGD EE F+ E+GA + + Sbjct: 64 AIGGIVENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQ 115
>Y055B_MYCGE (Q9ZB81) Hypothetical protein MG055.2| Length = 127 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Frame = -1 Query: 380 ILIMIHIFFLVMIFTRTLLAI----------TRFTSRCIFTSLRSIFTVLGRPLSAFLII 231 IL++I IFFLV I + + I + S IF +LR++ VLG F+II Sbjct: 13 ILLLISIFFLVCIISLVGIGIIFDLIRKASLSAIRSDPIFFNLRAVLIVLGVFAICFMII 72 Query: 230 SVILASCLSMRFHLTRSNLE 171 ++++ + + N+E Sbjct: 73 QLVISIMIWKTINTACENIE 92
>ASPM_FELCA (P62288) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3461 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Frame = +1 Query: 55 RKLKEKKVNYRRMEILKRTTLCLLKMAR-LKQRKVLRAEHSRLDLVKWNLMLRQLARMTL 231 R +KE+ V ++R L+ + +C+ R +K R+ LR H L++ ++ R L Sbjct: 2225 RAVKERNVQFQRYNKLRHSAICIQAGFRGMKARRHLRMMHLAATLIQRRFRTLKMRRRFL 2284 Query: 232 MMRKALKGLPRTVKMLLRLVKMHREVNLVMASSVL 336 +RK + R + + K H + L + +V+ Sbjct: 2285 SLRKTALWVQRKYRATV-CAKHHLQQFLRLQKAVI 2318
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 30.8 bits (68), Expect = 3.5 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = +3 Query: 555 HIFYGNDSFYILFRLHQMLYERLL 626 ++FY N+++YI RLHQ+L RLL Sbjct: 884 NLFYVNNNWYIFMRLHQILCLRLL 907
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 30.8 bits (68), Expect = 3.5 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = +3 Query: 555 HIFYGNDSFYILFRLHQMLYERLL 626 ++FY N+++YI RLHQ+L RLL Sbjct: 885 NLFYVNNNWYIFMRLHQILCLRLL 908
>SRX45_CAEEL (P34490) Serpentine receptor class X 45 (Protein srx-45)| Length = 361 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -1 Query: 401 TLTFCLRILIMIHIFFLVMIFTRTLLAITRFTSRCIFTSLRSIFTVLGRPLSAFLIISVI 222 +L R + I + + I+T ++++ RF S TS ++IFT + FLI S+I Sbjct: 85 SLAIAARFAQLCLICYDISIYTHLVISLNRFISLYFPTSYQNIFT---ERFTTFLICSII 141 Query: 221 LAS 213 S Sbjct: 142 FVS 144
>NAPG_HAEIN (P44652) Ferredoxin-type protein napG homolog| Length = 279 Score = 30.0 bits (66), Expect = 6.0 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 541 RTDHHIYFMGTIHFISCSGCIRC 609 R+D H F+ T+H +C+GC +C Sbjct: 181 RSDKHALFIPTVHSDACTGCGKC 203
>ASPM_GORGO (P62289) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3476 Score = 30.0 bits (66), Expect = 6.0 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 55 RKLKEKKVNYRRMEILKRTTLCLLKMARLKQ-RKVLRAEHSRLDLVKWNLMLRQLARMTL 231 R +KE+ + ++R L+ + + + + R K+ R+ L+ H L+ Q TL Sbjct: 2223 RAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLI-------QRRFRTL 2275 Query: 232 MMRKALKGLPRTVKMLLRLVKMH 300 MMR+ L +T ++ R + H Sbjct: 2276 MMRRRFLSLKKTAILIQRKYRAH 2298
>ASPM_PANTR (P62293) Abnormal spindle-like microcephaly-associated protein| homolog Length = 3477 Score = 30.0 bits (66), Expect = 6.0 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 55 RKLKEKKVNYRRMEILKRTTLCLLKMARLKQ-RKVLRAEHSRLDLVKWNLMLRQLARMTL 231 R +KE+ + ++R L+ + + + + R K+ R+ L+ H L+ Q TL Sbjct: 2224 RAMKERNIQFQRYNKLRHSVIYIQAIFRGKKARRHLKMMHIAATLI-------QRRFRTL 2276 Query: 232 MMRKALKGLPRTVKMLLRLVKMH 300 MMR+ L +T ++ R + H Sbjct: 2277 MMRRRFLSLKKTAILIQRKYRAH 2299
>SIN3_YEAST (P22579) Paired amphipathic helix protein SIN3| Length = 1536 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 540 ENRSSHIFYGNDSFYILFRLHQMLYERLLSAK 635 +NRS + N + YI FR +YERLL K Sbjct: 1131 QNRSIFNLFANTNIYIFFRHWTTIYERLLEIK 1162
>PST3_SCHPO (O74755) Paired amphipathic helix protein pst3 (SIN3 homolog 3)| Length = 1154 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = +3 Query: 513 HVPSSLHGRENRS--SHIFYGNDSFYILFRLHQMLYERL 623 H S G E+++ + F+GN + Y+LFRL + Y RL Sbjct: 828 HSKSKFLGEESKNIIGYNFFGNATMYVLFRLICVCYSRL 866
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -3 Query: 351 RHDLHENTARHHQIHFPMHLHQPQKHFHCP 262 ++D H + HH H P H H H H P Sbjct: 29 QNDNHHASHGHHNSHHPQHHHHHHHHHHPP 58
>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 481 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -3 Query: 351 RHDLHENTARHHQIHFPMHLHQPQKHFHCP 262 ++D H + HH H P H H H H P Sbjct: 29 QNDNHHASHGHHNSHHPQHHHHHHHHHHPP 58
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -3 Query: 351 RHDLHENTARHHQIHFPMHLHQPQKHFHCP 262 ++D H + HH H P H H H H P Sbjct: 29 QNDNHHASHGHHNSHHPQHHHHHHHHHHHP 58
>SCA_DROME (P21520) Protein scabrous precursor| Length = 799 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 297 HLHQPQKHFHCPR*TFECFPHHQRHSRQLPQHEVPLDQV 181 HL++P K PHHQ Q+PQ + P+D V Sbjct: 488 HLNKPHKR-----------PHHQNVQAQMPQDDSPIDSV 515
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -3 Query: 351 RHDLHENTARHHQIHFPMHLHQPQKHFHCP 262 ++D H + HH H P H H H H P Sbjct: 29 QNDNHHASHGHHNSHHPQHHHHHHHHHHHP 58
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 29.6 bits (65), Expect = 7.9 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 321 HHQIHFPMHLHQPQKHFHCPR*TFECFPHHQRHSRQLPQHE 199 HH H MH Q+H H ++ P H +H + PQH+ Sbjct: 3 HHHHHRHMHSPSSQQHEHQQHQQYQQPPQHHQH-YEAPQHQ 42 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,901,883 Number of Sequences: 219361 Number of extensions: 1269288 Number of successful extensions: 5259 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4810 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5167 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
