| Clone Name | bags36f22 |
|---|---|
| Clone Library Name | barley_pub |
>YPC1_CAEEL (Q11178) Hypothetical protein C05D10.1| Length = 529 Score = 33.1 bits (74), Expect = 0.65 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +1 Query: 40 GRPPPAALRFKQESRTNPILP--PIDTIPPRIGSSAHLAANQDPHPP 174 G PPP A ++++ +NP++P P+ +IP I +S ++AN P Sbjct: 196 GFPPPVASYYQRKESSNPLVPPTPLSSIPNLITNSNAVSANTSTASP 242
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = +1 Query: 4 APRXAAANPTYAGRPPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDPHP 171 AP+ A NP GR P + + E+ LP ++ PP +G+S + Q PHP Sbjct: 949 APKPALGNP---GRAPENSEAQEPENDQAEPLPGLEEKPPGVGTSEGVYLTQLPHP 1001
>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 753 Score = 31.6 bits (70), Expect = 1.9 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 9/110 (8%) Frame = +1 Query: 7 PRXAAANPTYAGRPPPAALRFKQESRTN----PILPPIDTIPPRIGSSAHLAANQDPH-- 168 P+ A PTY PPPAA N P PP P + +H + P+ Sbjct: 314 PQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQ 373 Query: 169 ---PPSRLGFATIGKQLRKVMGTVGAWRRAHDEAVVDLDESPNAAAGGGS 309 PP+ G +T + V + G S N++AGGG+ Sbjct: 374 AVAPPAPSGPSTTQPRPPSVQPSGGG---GGGSGGGGSSSSSNSSAGGGA 420
>DCP1B_PONPY (Q5R413) mRNA decapping enzyme 1B (EC 3.-.-.-)| Length = 609 Score = 31.6 bits (70), Expect = 1.9 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 10/112 (8%) Frame = +2 Query: 296 PAEAASTGLRPPRAHG------PR---PLTSKR*ATRGVREPR*SVVWLLWIWRRMLIRN 448 P +A G PP+AHG PR P++ + + GV P + +L + Sbjct: 400 PPQAYFNGSLPPQAHGREQSTLPRQTLPISGNQTGSSGVISP-----------QELLKKL 448 Query: 449 VLVMPEQQLAISSVGTNAGRFHLLYAFLRTGKK-DSAISETAPCESVHQVPM 601 +V EQQL S+ A +F +L TGK +S I++T+ E Q P+ Sbjct: 449 QIVQQEQQLHASNRPALAAKFPVLSQSSGTGKPLESWINKTSSTE--QQTPL 498
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 31.2 bits (69), Expect = 2.5 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Frame = +1 Query: 7 PRXAAANPTYAGRPPPAALRFK---QESRTNPILPPIDTIPPRIGSSA---HLAANQDPH 168 P + P++ G P L+ Q S+ P PP+ + PP G A ++AA Q+ H Sbjct: 198 PGVGGSQPSFPGYPSKQVLQAPTPFQTSQGPPGPPPVSSYPPHTGGFAQRPNMAAQQNLH 257 Query: 169 P 171 P Sbjct: 258 P 258
>NFAC1_HUMAN (O95644) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 943 Score = 31.2 bits (69), Expect = 2.5 Identities = 27/95 (28%), Positives = 38/95 (40%) Frame = +1 Query: 7 PRXAAANPTYAGRPPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDPHPPSRLG 186 PR A +P G+PPPA L + + PP + PP + S ++ P PP+ Sbjct: 804 PRPVATHPGSPGQPPPALLPQQVSA------PPSSSCPPGLEHSLCPSSPSPPLPPATQE 857 Query: 187 FATIGKQLRKVMGTVGAWRRAHDEAVVDLDESPNA 291 + G R H + V DESP A Sbjct: 858 PTCLQPCSPACPPATG--RPQHLPSTVRRDESPTA 890
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = +2 Query: 227 RLALGGEHTMKP----SWTWMNLPTPPPAEAAST-GLRPPRAHGPRPLTSK 364 R +L G +P W LP PPPA A T G RP R GP L S+ Sbjct: 1472 RPSLSGSGDGRPPPLLQWPPPRLPGPPPASPAPTEGPRPSRPSGPALLNSE 1522
>HEM3_AERPE (Q9Y9J0) Probable porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 305 Score = 30.8 bits (68), Expect = 3.2 Identities = 26/76 (34%), Positives = 36/76 (47%) Frame = -2 Query: 319 ARAGCLXXXXRWEIHPSPRRLHRVLASKRQPYPSPFEAAYQSLQTLIG*ADVDLGLQRGE 140 ARAGC + P R + RV A+ P S A + + I A +G+ GE Sbjct: 234 ARAGCRTPVAAYA-EPLGRSMVRVTAAALSPDGS--RAYWARAEGRIEEAR-RIGVSLGE 289 Query: 139 QMSRCVEGWYLWAEGS 92 ++SR VEGW+ GS Sbjct: 290 ELSRVVEGWHKTGGGS 305
>CD19_MOUSE (P25918) B-lymphocyte antigen CD19 precursor (B-lymphocyte surface| antigen B4) (Leu-12) (Differentiation antigen CD19) Length = 547 Score = 30.8 bits (68), Expect = 3.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 230 LALGGEHTMKPSWTWMNLPTPPPAEAASTG 319 L+LGGEH ++ W W +L P A A G Sbjct: 226 LSLGGEHPVREMWVWGSLLLLPQATALDEG 255
>RCOR2_RAT (Q5FWT8) REST corepressor 2| Length = 523 Score = 30.8 bits (68), Expect = 3.2 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = +1 Query: 28 PTYAGRPPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDPHPPSRLGFATIGKQ 207 PT +PPP + R P PP I P + +S H +A P PP L +G Q Sbjct: 461 PTLLRQPPPLQQGRFLQPRLAPNQPPPPLIRPALAASRH-SARPGPQPPPTL----VGAQ 515 Query: 208 L 210 L Sbjct: 516 L 516
>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 992 Score = 26.6 bits (57), Expect(2) = 4.0 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = +1 Query: 19 AANPTYAGRP-PPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDPHPP 174 AA + + RP PP R + P + P PPR G+ ++ P PP Sbjct: 28 AAGASQSRRPRPPRHARLQHLPEMTPAVTPEGPAPPRTGAWQRKDWSRAPPPP 80 Score = 22.3 bits (46), Expect(2) = 4.0 Identities = 14/46 (30%), Positives = 17/46 (36%) Frame = +2 Query: 257 KPSWTWMNLPTPPPAEAASTGLRPPRAHGPRPLTSKR*ATRGVREP 394 KPS P PP + G P GP + RG+R P Sbjct: 94 KPSRAPPQQPQPPRMQTGRGGSAPRPELGPPTNPFQAAVARGLRPP 139
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 26.9 bits (58), Expect(2) = 4.1 Identities = 20/59 (33%), Positives = 25/59 (42%) Frame = +1 Query: 4 APRXAAANPTYAGRPPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDPHPPSR 180 +PR +P+ PPPA R +P PP PPR S L + P PP R Sbjct: 536 SPRRRRRSPS----PPPA------RRRRSPSPPP----PPRRRRSPSLPRRRSPSPPPR 580 Score = 21.9 bits (45), Expect(2) = 4.1 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Frame = +2 Query: 284 PTPPPAEAASTGLRPP-RAHGPRPLTSKR 367 P+PPP ++ PP R P P + +R Sbjct: 599 PSPPPKRRTASPPPPPKRRASPSPQSKRR 627
>AB1IP_HUMAN (Q7Z5R6) Amyloid beta A4 precursor protein-binding family B member| 1-interacting protein (APBB1-interacting protein 1) (Rap1-GTP-interacting adapter molecule) (RIAM) (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich protein 73) (Retinoic ac Length = 666 Score = 25.8 bits (55), Expect(2) = 4.2 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +1 Query: 46 PPPAALRFKQESRTNP--ILPPIDTIPPRIGSSAHLAANQDPHPP 174 PPP L + P + PP D +PP S A +A ++ P PP Sbjct: 558 PPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPP 602 Score = 23.1 bits (48), Expect(2) = 4.2 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = +2 Query: 281 LPTPPPAEAASTGLRPPRAHGPRPLTSKR 367 LP PPP A P + P P +KR Sbjct: 598 LPPPPPPPPAPAPAPVPDSARPPPAVAKR 626
>NKX61_MOUSE (Q99MA9) Homeobox protein Nkx-6.1| Length = 365 Score = 26.6 bits (57), Expect(2) = 4.4 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 46 PPPAALRFKQESRTN---PILPPIDTIPPRIGSSAHLAANQDPHPP 174 PP AAL E +T PP+ T PP SS+ +++ P PP Sbjct: 20 PPLAALHSMAEMKTPLYPAAYPPLPTGPP--SSSSSSSSSSSPSPP 63 Score = 22.3 bits (46), Expect(2) = 4.4 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +2 Query: 284 PTPPPAEAASTGLRPPRAHGPRPLTS 361 P+PP GL+PP A G L S Sbjct: 60 PSPPLGSHNPGGLKPPAAGGLSSLGS 85
>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) (Verprolin homology domain-containing protein 3) Length = 502 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +1 Query: 46 PPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDPHPPS 177 PPP + Q + +P+ P+ P SS H A PHPPS Sbjct: 347 PPPPVIPSAQTAFVSPLQMPMQPPFPASASSTHAA---PPHPPS 387
>ACHA2_MOUSE (Q91X60) Neuronal acetylcholine receptor protein, alpha-2 subunit| precursor Length = 512 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = +2 Query: 221 WVRLALGGEHTMKPSWTWMNLPTPPPAEAASTGLR 325 WVR+AL G P W MN P PP S GL+ Sbjct: 342 WVRVALLGR---VPRWLMMNRPLPPMELHGSPGLK 373
>EVL_MOUSE (P70429) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 414 Score = 30.0 bits (66), Expect = 5.5 Identities = 26/102 (25%), Positives = 35/102 (34%) Frame = +1 Query: 1 GAPRXAAANPTYAGRPPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDPHPPSR 180 G P AA+ PPP T PP PP + + N D S Sbjct: 165 GHPSSAASTTLSCSGPPPPPPPPVPPPPTGSTPPP----PPPLPAGGAQGTNHDESSASG 220 Query: 181 LGFATIGKQLRKVMGTVGAWRRAHDEAVVDLDESPNAAAGGG 306 L A G +LR+V A + D + ++ GGG Sbjct: 221 LAAALAGAKLRRVQRPEDASGGSSPSGTSKSDANRASSGGGG 262
>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)| Length = 523 Score = 30.0 bits (66), Expect = 5.5 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +1 Query: 28 PTYAGRPPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDPHPPSRL 183 PT +PPP + R P PP I P + +S H +A P PP L Sbjct: 461 PTLLRQPPPLQQGRFLQPRLAPNQPPPPLIRPALAASRH-SARPGPQPPPTL 511
>NKX61_RAT (O35762) Homeobox protein Nkx-6.1| Length = 365 Score = 26.6 bits (57), Expect(2) = 5.7 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 46 PPPAALRFKQESRTN---PILPPIDTIPPRIGSSAHLAANQDPHPP 174 PP AAL E +T PP+ T PP SS+ +++ P PP Sbjct: 20 PPLAALHSMAEMKTPLYPAAYPPLPTGPP--SSSSSSSSSSSPSPP 63 Score = 21.9 bits (45), Expect(2) = 5.7 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +2 Query: 284 PTPPPAEAASTGLRPPRAHGPRPLTS 361 P+PP GL+PP A G L S Sbjct: 60 PSPPLGAHNPGGLKPPAAGGLSSLGS 85
>TFE3_HUMAN (P19532) Transcription factor E3| Length = 743 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Frame = +1 Query: 4 APRXAAANPTYAG------RPPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQDP 165 +P AA++P + RP AA + + P T PPR G + P Sbjct: 542 SPLRAASDPLLSSVSLLSPRPAAAAAASAWKRSPDQASPLPWTFPPRKGGPVRMRPRLFP 601 Query: 166 HPPSRL 183 HPP RL Sbjct: 602 HPPMRL 607
>RCOR3_HUMAN (Q9P2K3) REST corepressor 3| Length = 495 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Frame = +1 Query: 22 ANPTYAGRPPPAA--LRFKQESRT-----NPILPPIDTIPPRIGSSAHLAANQDPHPPSR 180 A P +PPP RF Q T P++ P +++PPR+ L+ PPS Sbjct: 424 AAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSL 483 Query: 181 LGFAT 195 +G T Sbjct: 484 IGIQT 488
>RX_DROME (Q9W2Q1) Retinal homeobox protein Rx (DRx1) (DRx)| Length = 873 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +1 Query: 10 RXAAANPTYAGRPPPAALRFKQESRTNPILPPIDTIPPRIGSSA 141 + A ++PT AG PPP F ES+T P+ P R SSA Sbjct: 318 KYAKSSPTGAGPPPPPGAYF-MESQTAPVAPSQINYDERSMSSA 360
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 29.6 bits (65), Expect = 7.2 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = +2 Query: 287 TPPPAEAASTGLRPPRAHGPRPLTSK 364 TPPPAE AS PP+A +TSK Sbjct: 227 TPPPAEPASLPQEPPKAFSWASVTSK 252
>KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4| Length = 520 Score = 29.6 bits (65), Expect = 7.2 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 248 HTMKPSWTWMNLPTPPPAEAASTGLRPPRAHG 343 +T K +WT +++P+PPP A + P+ G Sbjct: 101 NTRKDTWTKVDIPSPPPRRCAHQAVVVPQGGG 132
>HIRP3_HUMAN (Q9BW71) HIRA-interacting protein 3| Length = 556 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +1 Query: 376 EGSSRAKIKRRVAVVDLEADADQECSGDARTTISHLIGGNKRRKVPPVICLSPDREE-RF 552 E + +KR V L+ D+ S + + ++ K+ K PP C P+R+ RF Sbjct: 43 EPEEKQALKRLVEEEPLKMQVDEAASREDKLDLT------KKGKRPPTPCSDPERKRFRF 96 Query: 553 SNQRNSTVRVSTP 591 +++ S S+P Sbjct: 97 NSESESGSEASSP 109
>HUTU_VIBPA (Q87Q76) Urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 565 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -3 Query: 297 GGGVGRFIQVHDGFIVCSPPSANRTHHLSKLLTN 196 GGGVG H G ++C S + + ++++L N Sbjct: 493 GGGVGMGFSQHSGMVICCDGSDDASQRIARVLHN 526
>GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein] Length = 469 Score = 29.3 bits (64), Expect = 9.4 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = +1 Query: 7 PRXAAANPTYAGR--PPPAALRFKQESRTNPILPPIDTIPPRIGSSAHLAANQD 162 P AA P Y G P P A ++P PP +PP SAH + D Sbjct: 132 PLPAALPPPYPGSSGPTPTAPPLPPTPPSSPANPPASALPPPSPVSAHTRSKTD 185
>RCOR3_MOUSE (Q6PGA0) REST corepressor 3| Length = 451 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Frame = +1 Query: 22 ANPTYAGRPPPAA--LRFKQESRT-----NPILPPIDTIPPRIGSSAHLAANQDPHPPSR 180 A P +PPP RF Q T P++ P +++PPR+ L PPS Sbjct: 380 AAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSL 439 Query: 181 LGFAT 195 +G T Sbjct: 440 IGIQT 444
>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)| Length = 1093 Score = 29.3 bits (64), Expect = 9.4 Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 3/93 (3%) Frame = -2 Query: 349 AWPVCPRWSEARAGCLXXXXRWEIHPSPRRLHRVLASKRQPYPSPFEAAYQSLQTLIG*A 170 AW WS+ A C ++ S P PSP E Sbjct: 854 AWSCWTAWSQCSASCGGGH------------YQRTRSCTSPAPSPGE------------- 888 Query: 169 DVDLGLQRGEQM---SRCVEGWYLWAEGSGWSV 80 D+ LGL E + C EGW LW+E W V Sbjct: 889 DICLGLHTEEALCSTQACPEGWSLWSE---WGV 918
>MYPC3_HUMAN (Q14896) Myosin-binding protein C, cardiac-type (Cardiac MyBP-C)| (C-protein, cardiac muscle isoform) Length = 1274 Score = 29.3 bits (64), Expect = 9.4 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -1 Query: 305 PPPAAALGDSSKSTTASSCARLQAPT 228 P PAA LG+S+ S SS A L PT Sbjct: 121 PAPAAELGESAPSPKGSSSAALNGPT 146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.131 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,085,192 Number of Sequences: 219361 Number of extensions: 1870205 Number of successful extensions: 5511 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4890 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5481 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)