ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags35o16 |
|---|---|
| Clone Library Name | barley_pub |
>GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)| Length = 1258 Score = 32.7 bits (73), Expect = 0.62 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Frame = -3 Query: 231 PLGPDRGSXXXXXRVGHPAAA------SPQDGRLGADDPSHAPGGLHPPRRQQ 91 PLGP RGS GH AA +P G A DP P L PR Q+ Sbjct: 606 PLGPRRGSDGPTYGHGHAGAAPAFPHEAPGGGTRRASDPVRRPDALSLPRVQR 658
>YP68_CAEEL (Q09217) Hypothetical protein B0495.8| Length = 313 Score = 30.8 bits (68), Expect = 2.4 Identities = 21/80 (26%), Positives = 35/80 (43%) Frame = +1 Query: 259 AQEKKPRVRKTKEERREMVESFVDTYRVSNSGKFPSVNLTHKEVGGSYYIVREIMRDIIQ 438 +Q + ++ E ++ ++ D ++ N GK HK V ++EI D Sbjct: 116 SQAADSKAKQVAEIEEKIAKNVDDIEKLGNEGKIEESMKLHKYVEELREKIQEI-EDSQT 174 Query: 439 ENRVLGPGDLNAKTLSFEDC 498 E + GPG +AK EDC Sbjct: 175 EVKTAGPGSNSAKLRVCEDC 194
>GPR39_MOUSE (Q5U431) Probable G-protein coupled receptor 39| Length = 456 Score = 30.8 bits (68), Expect = 2.4 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Frame = -1 Query: 383 LCVRLT---EGNFPLFETRYVSTKDSTISLRSSLVFL 282 LC RLT R++STKDST S RS L+FL Sbjct: 359 LCCRLTLQHANQEKRQRARFISTKDSTSSARSPLIFL 395
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 30.4 bits (67), Expect = 3.1 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = -1 Query: 236 PSPWDLTXXXXXXXXXXGTPPLHLPKTDAWAPTTQVTLP 120 PSPWD T P+ P +A +PT VT P Sbjct: 492 PSPWDNGTESKAPDMTSSTSPVTTPTPNATSPTPAVTTP 530
>DEPP_PONPY (Q5RBE4) Protein DEPP| Length = 212 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Frame = -3 Query: 246 PHR----AEPLGPDRGSXXXXXRVGHPAAASPQDGRLGAD 139 PHR ++P+G RG GH A PQDG+ +D Sbjct: 135 PHRQMDSSKPMGAPRGRLCEARMPGHSLARPPQDGQQSSD 174
>DEPP_HUMAN (Q9NTK1) Protein DEPP (Decidual protein induced by progesterone)| (Fasting-induced gene protein) (FIG) Length = 212 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Frame = -3 Query: 246 PHR----AEPLGPDRGSXXXXXRVGHPAAASPQDGRLGAD 139 PHR ++P+G RG GH A PQDG+ +D Sbjct: 135 PHRQMDSSKPMGAPRGRLCEARMPGHSLARPPQDGQQSSD 174
>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)| Length = 299 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Frame = -3 Query: 252 GAPHRAEPLGPDRGSXXXXXRVGHPAAASPQ-----DGRLGADDPSHAPGGLHPP 103 G P A P GP GS G P P+ DG+ GAD APG PP Sbjct: 219 GPPGEAGPQGPP-GSPGQPGADGSPGQPGPKGPNGPDGQPGADGNPGAPGPAGPP 272
>PKD1_HUMAN (P98161) Polycystin-1 precursor (Autosomal dominant polycystic kidney| disease protein 1) Length = 4303 Score = 29.3 bits (64), Expect = 6.9 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 10/64 (15%) Frame = +1 Query: 1 SARGASSPPSFHPHAALGL---TKPPRGGRW*FL-------LPARRMQATGSVTWVVGAQ 150 S+ GA PP F PH +GL + G L LP ATG W+ G Sbjct: 2533 SSYGAVLPPGFRPHFEVGLAVVVQDQLGAAVVALNRSLAITLPEPNGSATGLTVWLHGLT 2592 Query: 151 ASVL 162 ASVL Sbjct: 2593 ASVL 2596
>SQHC_RHISN (P55348) Probable squalene--hopene cyclase (EC 5.4.99.17)| Length = 647 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 12/60 (20%) Frame = -1 Query: 176 PLHLPKTDAWAPTTQVTLPVACILLAGSKNHHRPPLGGLV------------SPSAAWGW 33 P HL K WA TT V L V +L +KN + L +P +WGW Sbjct: 166 PFHLYKISYWARTTIVPLMVLAVLKPRAKNPKGVGIEELFLQDTKSVGMNPKAPHQSWGW 225
>6PGD_STAAW (P63335) 6-phosphogluconate dehydrogenase, decarboxylating (EC| 1.1.1.44) Length = 468 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +1 Query: 286 KTKEERREMVESFVDTYRVSNSGKFPSVNLTHKEVGGSYYIVREIM----RDIIQENRVL 453 K E + +VE +DT +GK+ S+N E+G I+ E + I+E RV Sbjct: 240 KLDENKEALVEKILDTAGQKGTGKWTSINAL--ELGIPLTIITESVFARFISSIKEERVN 297 Query: 454 GPGDLNAKTLSFE 492 +LN SF+ Sbjct: 298 ASKELNGPKASFD 310
>6PGD_STAAS (Q6G954) 6-phosphogluconate dehydrogenase, decarboxylating (EC| 1.1.1.44) Length = 468 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +1 Query: 286 KTKEERREMVESFVDTYRVSNSGKFPSVNLTHKEVGGSYYIVREIM----RDIIQENRVL 453 K E + +VE +DT +GK+ S+N E+G I+ E + I+E RV Sbjct: 240 KLDENKEALVEKILDTAGQKGTGKWTSINAL--ELGIPLTIITESVFARFISSIKEERVN 297 Query: 454 GPGDLNAKTLSFE 492 +LN SF+ Sbjct: 298 ASKELNGPKASFD 310
>6PGD_STAAR (Q6GGI7) 6-phosphogluconate dehydrogenase, decarboxylating (EC| 1.1.1.44) Length = 468 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +1 Query: 286 KTKEERREMVESFVDTYRVSNSGKFPSVNLTHKEVGGSYYIVREIM----RDIIQENRVL 453 K E + +VE +DT +GK+ S+N E+G I+ E + I+E RV Sbjct: 240 KLDENKEALVEKILDTAGQKGTGKWTSINAL--ELGIPLTIITESVFARFISSIKEERVN 297 Query: 454 GPGDLNAKTLSFE 492 +LN SF+ Sbjct: 298 ASKELNGPKASFD 310
>6PGD_STAAN (P63334) 6-phosphogluconate dehydrogenase, decarboxylating (EC| 1.1.1.44) Length = 468 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +1 Query: 286 KTKEERREMVESFVDTYRVSNSGKFPSVNLTHKEVGGSYYIVREIM----RDIIQENRVL 453 K E + +VE +DT +GK+ S+N E+G I+ E + I+E RV Sbjct: 240 KLDENKEALVEKILDTAGQKGTGKWTSINAL--ELGIPLTIITESVFARFISSIKEERVN 297 Query: 454 GPGDLNAKTLSFE 492 +LN SF+ Sbjct: 298 ASKELNGPKASFD 310
>6PGD_STAAM (Q931R3) 6-phosphogluconate dehydrogenase, decarboxylating (EC| 1.1.1.44) Length = 468 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +1 Query: 286 KTKEERREMVESFVDTYRVSNSGKFPSVNLTHKEVGGSYYIVREIM----RDIIQENRVL 453 K E + +VE +DT +GK+ S+N E+G I+ E + I+E RV Sbjct: 240 KLDENKEALVEKILDTAGQKGTGKWTSINAL--ELGIPLTIITESVFARFISSIKEERVN 297 Query: 454 GPGDLNAKTLSFE 492 +LN SF+ Sbjct: 298 ASKELNGPKASFD 310
>6PGD_STAAC (Q5HFR2) 6-phosphogluconate dehydrogenase, decarboxylating (EC| 1.1.1.44) Length = 468 Score = 29.3 bits (64), Expect = 6.9 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Frame = +1 Query: 286 KTKEERREMVESFVDTYRVSNSGKFPSVNLTHKEVGGSYYIVREIM----RDIIQENRVL 453 K E + +VE +DT +GK+ S+N E+G I+ E + I+E RV Sbjct: 240 KLDENKEALVEKILDTAGQKGTGKWTSINAL--ELGIPLTIITESVFARFISSIKEERVN 297 Query: 454 GPGDLNAKTLSFE 492 +LN SF+ Sbjct: 298 ASKELNGPKASFD 310 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,850,805 Number of Sequences: 219361 Number of extensions: 1169411 Number of successful extensions: 4059 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3898 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4057 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
