ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags36c24 |
|---|---|
| Clone Library Name | barley_pub |
>UCR6_SOLTU (P48502) Ubiquinol-cytochrome c reductase complex 14 kDa protein| (EC 1.10.2.2) (CR14) Length = 123 Score = 30.8 bits (68), Expect = 2.7 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Frame = -2 Query: 312 SSCYENHKTHHDDKYQ-------HQSILRLPRKEDSLNIHRSIEVVDLVSPHRYLP 166 SS N+ HDD Y +++ RLPR+ R + +DL H+YLP Sbjct: 26 SSRLRNYGLRHDDLYDPMYDLDVKEALNRLPREIVDARNQRLLRAMDLSMKHQYLP 81
>TRI63_HUMAN (Q969Q1) Ubiquitin ligase TRIM63 (EC 6.3.2.-) (Tripartite| motif-containing 63) (Muscle-specific RING finger protein 1) (MuRF1) (MURF-1) (RING finger protein 28) (Striated muscle RING zinc finger protein) (Iris RING finger protein) Length = 353 Score = 30.8 bits (68), Expect = 2.7 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 5/61 (8%) Frame = +3 Query: 363 ACFMVPSEEM-----SELNMLRDKRLNSTDIMQLVLSLIEDRKQLALELSSQVKARLTER 527 AC + P + + +ELN + D +Q +++ +ED +++ E S QVK L+++ Sbjct: 153 ACEVAPLQSVFQGQKTELNNCISMLVAGNDRVQTIITQLEDSRRVTKENSHQVKEELSQK 212 Query: 528 F 530 F Sbjct: 213 F 213
>UL32_EBV (P03184) Probable major envelope glycoprotein BFLF1| Length = 525 Score = 30.4 bits (67), Expect = 3.5 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%) Frame = -2 Query: 249 RLPRKEDSL-----NIHRSIEVVDLVSPHRYLPL*SRYVICIPPSEKNYQKILQIDLCHF 85 R P+ ED + N+ E V L+ H YLP + I PP Y+ + C Sbjct: 38 RTPKMEDFVPWTVDNLKSQFEAVGLLMAHSYLPANAEEGIAYPPLVHTYESLSPASTCRV 97 Query: 84 -HLNHTQISPSRCPL 43 L T ++ S P+ Sbjct: 98 CDLLDTLVNHSDAPV 112
>CF060_HUMAN (Q8NB25) Protein C6orf60| Length = 1020 Score = 30.4 bits (67), Expect = 3.5 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Frame = +3 Query: 306 KNLEEDTDDKLLRRTKELDACFMVPSEEMSELNMLRDKRLNS-----------TDIMQLV 452 KN+ +K KE++A V EEM E ++R+ + T+ Q++ Sbjct: 828 KNIMRADFNKTNELLKEINAALQVSLEEMEEKYLMRESKPEDIQMITELKAMLTERDQII 887 Query: 453 LSLIEDRKQLALEL 494 LIED K LEL Sbjct: 888 KKLIEDNKFYQLEL 901
>ANC1_CAEEL (Q9N4M4) Nuclear anchorage protein 1 (Anchorage 1 protein) (Nesprin| homolog) Length = 8545 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = +3 Query: 312 LEEDTDDKLLRRTKELDACFMVPSEEMSELNMLRDKRLNSTDIMQLVLSLI--EDRKQLA 485 + ED D+KL + ELD S+E + ++ +LN + Q+ L + +D K Sbjct: 7472 IAEDLDNKLAKLQTELDDAIKT-SDEHDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAE 7530 Query: 486 LELSSQVKARLTERFAAKEQ 545 E+++ +K E AK Q Sbjct: 7531 KEITNSLKPEEAEPLLAKIQ 7550 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = +3 Query: 312 LEEDTDDKLLRRTKELDACFMVPSEEMSELNMLRDKRLNSTDIMQLVLSLI--EDRKQLA 485 + ED D+KL + ELD S+E + ++ +LN + Q+ L + +D K Sbjct: 6569 IAEDLDNKLAKLQTELDDAIKT-SDEHDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAE 6627 Query: 486 LELSSQVKARLTERFAAKEQ 545 E+++ +K E AK Q Sbjct: 6628 KEITNSLKPEEAEPLLAKIQ 6647 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = +3 Query: 312 LEEDTDDKLLRRTKELDACFMVPSEEMSELNMLRDKRLNSTDIMQLVLSLI--EDRKQLA 485 + ED D+KL + ELD S+E + ++ +LN + Q+ L + +D K Sbjct: 5666 IAEDLDNKLAKLQTELDDAIKT-SDEHDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAE 5724 Query: 486 LELSSQVKARLTERFAAKEQ 545 E+++ +K E AK Q Sbjct: 5725 KEITNSLKPEEAEPLLAKIQ 5744 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = +3 Query: 312 LEEDTDDKLLRRTKELDACFMVPSEEMSELNMLRDKRLNSTDIMQLVLSLI--EDRKQLA 485 + ED D+KL + ELD S+E + ++ +LN + Q+ L + +D K Sbjct: 4763 IAEDLDNKLAKLQTELDDAIKT-SDEHDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAE 4821 Query: 486 LELSSQVKARLTERFAAKEQ 545 E+++ +K E AK Q Sbjct: 4822 KEITNSLKPEEAEPLLAKIQ 4841 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = +3 Query: 312 LEEDTDDKLLRRTKELDACFMVPSEEMSELNMLRDKRLNSTDIMQLVLSLI--EDRKQLA 485 + ED D+KL + ELD S+E + ++ +LN + Q+ L + +D K Sbjct: 3809 IAEDLDNKLAKLQTELDDAIKT-SDEHDKEQLILSLKLNISQFEQIPLDQLKSDDLKTAE 3867 Query: 486 LELSSQVKARLTERFAAKEQ 545 E+++ +K E AK Q Sbjct: 3868 KEITNSLKPEEAEPLLAKIQ 3887
>U202_DROME (Q9W3C1) Polycomb protein l(1)G0020 (p110 protein)| Length = 1008 Score = 30.0 bits (66), Expect = 4.6 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 333 KLLRRTKELDACFMVPSEEMSELNMLRDKRLNSTDIMQ-LVLSLIEDRKQLALELSSQVK 509 K K + CF EE E MLR+ L+ + +Q L LSL ++ Q A +LS Q + Sbjct: 865 KFFDAMKRCNQCFRSVLEEHIEGGMLREADLSKGEELQPLTLSLDKELDQTAQKLSKQQR 924 Query: 510 ARL 518 L Sbjct: 925 KEL 927
>RNH3_STRT1 (Q5LY37) Ribonuclease HIII (EC 3.1.26.4) (RNase HIII)| Length = 296 Score = 29.6 bits (65), Expect = 6.0 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%) Frame = -2 Query: 279 DDKYQHQSILRLPRKEDSL----NIHRSIEV-VDLVSPHRYLPL*S-----RYVICIPPS 130 ++K H+++L PRK + + H ++ V V L + +L L S + VI S Sbjct: 136 EEKIPHKALLLSPRKYNEVVGDGKAHNAVSVKVALHNQAIFLLLQSGAKPDKIVIDAFIS 195 Query: 129 EKNYQKILQIDLCHFHLNHTQISPSRCPLPLPEQVDG 19 EKNYQK L+ + HF P+ L E+ +G Sbjct: 196 EKNYQKYLKNERNHFEF----------PITLEEKAEG 222
>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1764 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 207 CFYGYSVNPLFGATSRCSDADTCHRDGSC 293 C+ GY++ L G T C D D C + G C Sbjct: 903 CYPGYTLATL-GDTQECQDVDECEQPGVC 930
>MEDB_GIALA (Q08014) Median body protein| Length = 857 Score = 29.3 bits (64), Expect = 7.9 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = +3 Query: 336 LLRRTKELDACFMVPSEEMSELNMLRDKRLNS------TDIMQLVLSLIEDRKQLALELS 497 L + ELD E+NMLRDK L S +M + L+ + ++ QL +L Sbjct: 622 LREKANELDGYNRERQAREHEINMLRDKALESDKLRQDNRVMAMELTELREKVQLLEKLQ 681 Query: 498 SQVKARLTE 524 + +AR E Sbjct: 682 YEKRARDVE 690 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,976,729 Number of Sequences: 219361 Number of extensions: 1438777 Number of successful extensions: 4046 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3837 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4043 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
