ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags36c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 157 5e-35
2gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare str... 157 5e-35
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
4ref|XM_479593.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
7dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8gb|AC009712.22| Homo sapiens chromosome 15, clone RP11-361M10, c... 42 1.9
9emb|CR769783.10| Zebrafish DNA sequence from clone DKEY-40A23 in... 42 1.9
10emb|AL392085.12| Human DNA sequence from clone RP11-225L6 on chr... 42 1.9
11emb|Z35783.1|SCYBL022C S.cerevisiae chromosome II reading frame ... 42 1.9
12emb|X74544.1|SCPIM1 S.cerevisiae PIM1 gene for mitochondrial ATP... 42 1.9
13emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in l... 42 1.9
14gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, comp... 42 1.9
15gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, co... 42 1.9
16gb|DQ332499.1| Synthetic construct Saccharomyces cerevisiae clon... 42 1.9
17gb|L28110.1|YSCPDQLONA Saccharomyces cerevisiae (LON) mRNA, comp... 42 1.9
18ref|NM_121016.2| Arabidopsis thaliana DNA binding / protein bind... 40 7.5
19ref|XM_526804.1| PREDICTED: Pan troglodytes similar to polymeras... 40 7.5
20ref|XM_526803.1| PREDICTED: Pan troglodytes similar to polymeras... 40 7.5
21ref|XM_479268.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.5
22gb|AC139025.9| Mus musculus chromosome 8, clone RP23-426K13, com... 40 7.5
23ref|XM_429341.1| PREDICTED: Gallus gallus LOC415563 (LOC415563),... 40 7.5
24ref|NM_031374.1| Mus musculus testis expressed gene 15 (Tex15), ... 40 7.5
25ref|NM_181808.1| Homo sapiens polymerase (DNA directed) nu (POLN... 40 7.5
26gb|AC148981.7| Mus musculus BAC clone RP23-201L15 from chromosom... 40 7.5
27emb|AL158068.18| Human DNA sequence from clone RP11-478C1 on chr... 40 7.5
28emb|AL133551.13| Human DNA sequence from clone RP11-57G10 on chr... 40 7.5
29gb|AY136549.1| Homo sapiens DNA polymerase N mRNA, complete cds 40 7.5
30emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) com... 40 7.5
31gb|AC010328.4| Homo sapiens chromosome 19 clone CITB-E1_2620I22,... 40 7.5
32gb|AY120701.1| Arabidopsis thaliana AT5g09790/F17I14_20 mRNA, co... 40 7.5
33gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, compl... 40 7.5
34gb|AC090810.14| Homo sapiens chromosome 8, clone RP11-48J8, comp... 40 7.5
35gb|AY064131.1| Arabidopsis thaliana AT5g09790/F17I14_20 mRNA, co... 40 7.5
36gb|AC006271.2|AC006271 Homo sapiens chromosome 19, BAC BC319430 ... 40 7.5
37gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae)... 40 7.5
38gb|AF285589.1|AF285589 Mus musculus testis protein TEX15 (Tex15)... 40 7.5
39gb|BC063106.1| Mus musculus testis expressed gene 15, mRNA (cDNA... 40 7.5
40gb|DQ060036.1| Homo sapiens polymerase (DNA directed) nu (POLN) ... 40 7.5
41emb|BX830582.1|CNS0A1IA Arabidopsis thaliana Full-length cDNA Co... 40 7.5
42emb|BX831582.1|CNS0A161 Arabidopsis thaliana Full-length cDNA Co... 40 7.5
43gb|AC079762.7| Homo sapiens BAC clone RP11-150F12 from 2, comple... 40 7.5
44ref|XM_214365.3| PREDICTED: Rattus norvegicus testis expressed g... 40 7.5
45dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
46dbj|AB020752.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.5
47emb|BX537309.10| Zebrafish DNA sequence from clone CH211-225N7 i... 40 7.5
48emb|AL929171.9| Zebrafish DNA sequence from clone CH211-132P20 i... 40 7.5
49emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, B... 40 7.5
50gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, comple... 40 7.5
51emb|Z49918.1|HSL124H12 Human DNA sequence from clone LA04NC01-12... 40 7.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  157 bits (79), Expect = 5e-35
 Identities = 250/307 (81%)
 Strand = Plus / Minus

                                                                            
Query: 246      acctcaagatgctctgatgctgatacttgtcatcgtgatgggtcttgtggttttcataac 305
                ||||||||||||| |||||| |||   |||  ||||||||  |||  ||||||||||   
Sbjct: 11635860 acctcaagatgctttgatgcagatgtctgttgtcgtgatgactctcatggttttcatggt 11635801

                                                                            
Query: 306      aagaacttggaagaagatactgatgataagttgcttcgaagaactaaagaattggatgca 365
                || ||| | ||| |||| |||||||| ||||||||| ||||| |||||||| | ||||  
Sbjct: 11635800 aataaccttgaacaagacactgatgagaagttgcttagaagagctaaagaacttgatgag 11635741

                                                                            
Query: 366      tgctttatggttccttctgaagaaatgagcgagcttaacatgctcagggataagagattg 425
                ||||| |||||||||  ||||||||  |  |||||||||||||| |||||||| || || 
Sbjct: 11635740 tgcttcatggttcctcttgaagaaaataatgagcttaacatgctgagggataatagttta 11635681

                                                                            
Query: 426      aactcaactgacattatgcagctggttcttagcttgattgaagacagaaaacaattggca 485
                | ||||||||||||  |||||||| | |  |  ||||||||||| ||||  |||||||||
Sbjct: 11635680 agctcaactgacatgttgcagctgatacagactttgattgaagatagaaggcaattggca 11635621

                                                                            
Query: 486      ctcgaactatcttcacaggttaaggcacgtcttacagaaaggtttgcagccaaagagcaa 545
                ||| || | ||||||||  ||||||||||||||||||| || ||||||||||||||||||
Sbjct: 11635620 ctccaattgtcttcacaaattaaggcacgtcttacagagagatttgcagccaaagagcaa 11635561

                       
Query: 546      tataagc 552
                 ||||||
Sbjct: 11635560 cataagc 11635554
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>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0093J20, from chromosome 3, complete sequence
          Length = 148635

 Score =  157 bits (79), Expect = 5e-35
 Identities = 250/307 (81%)
 Strand = Plus / Minus

                                                                         
Query: 246   acctcaagatgctctgatgctgatacttgtcatcgtgatgggtcttgtggttttcataac 305
             ||||||||||||| |||||| |||   |||  ||||||||  |||  ||||||||||   
Sbjct: 24955 acctcaagatgctttgatgcagatgtctgttgtcgtgatgactctcatggttttcatggt 24896

                                                                         
Query: 306   aagaacttggaagaagatactgatgataagttgcttcgaagaactaaagaattggatgca 365
             || ||| | ||| |||| |||||||| ||||||||| ||||| |||||||| | ||||  
Sbjct: 24895 aataaccttgaacaagacactgatgagaagttgcttagaagagctaaagaacttgatgag 24836

                                                                         
Query: 366   tgctttatggttccttctgaagaaatgagcgagcttaacatgctcagggataagagattg 425
             ||||| |||||||||  ||||||||  |  |||||||||||||| |||||||| || || 
Sbjct: 24835 tgcttcatggttcctcttgaagaaaataatgagcttaacatgctgagggataatagttta 24776

                                                                         
Query: 426   aactcaactgacattatgcagctggttcttagcttgattgaagacagaaaacaattggca 485
             | ||||||||||||  |||||||| | |  |  ||||||||||| ||||  |||||||||
Sbjct: 24775 agctcaactgacatgttgcagctgatacagactttgattgaagatagaaggcaattggca 24716

                                                                         
Query: 486   ctcgaactatcttcacaggttaaggcacgtcttacagaaaggtttgcagccaaagagcaa 545
             ||| || | ||||||||  ||||||||||||||||||| || ||||||||||||||||||
Sbjct: 24715 ctccaattgtcttcacaaattaaggcacgtcttacagagagatttgcagccaaagagcaa 24656

                    
Query: 546   tataagc 552
              ||||||
Sbjct: 24655 cataagc 24649
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  157 bits (79), Expect = 5e-35
 Identities = 250/307 (81%)
 Strand = Plus / Minus

                                                                            
Query: 246      acctcaagatgctctgatgctgatacttgtcatcgtgatgggtcttgtggttttcataac 305
                ||||||||||||| |||||| |||   |||  ||||||||  |||  ||||||||||   
Sbjct: 11632623 acctcaagatgctttgatgcagatgtctgttgtcgtgatgactctcatggttttcatggt 11632564

                                                                            
Query: 306      aagaacttggaagaagatactgatgataagttgcttcgaagaactaaagaattggatgca 365
                || ||| | ||| |||| |||||||| ||||||||| ||||| |||||||| | ||||  
Sbjct: 11632563 aataaccttgaacaagacactgatgagaagttgcttagaagagctaaagaacttgatgag 11632504

                                                                            
Query: 366      tgctttatggttccttctgaagaaatgagcgagcttaacatgctcagggataagagattg 425
                ||||| |||||||||  ||||||||  |  |||||||||||||| |||||||| || || 
Sbjct: 11632503 tgcttcatggttcctcttgaagaaaataatgagcttaacatgctgagggataatagttta 11632444

                                                                            
Query: 426      aactcaactgacattatgcagctggttcttagcttgattgaagacagaaaacaattggca 485
                | ||||||||||||  |||||||| | |  |  ||||||||||| ||||  |||||||||
Sbjct: 11632443 agctcaactgacatgttgcagctgatacagactttgattgaagatagaaggcaattggca 11632384

                                                                            
Query: 486      ctcgaactatcttcacaggttaaggcacgtcttacagaaaggtttgcagccaaagagcaa 545
                ||| || | ||||||||  ||||||||||||||||||| || ||||||||||||||||||
Sbjct: 11632383 ctccaattgtcttcacaaattaaggcacgtcttacagagagatttgcagccaaagagcaa 11632324

                       
Query: 546      tataagc 552
                 ||||||
Sbjct: 11632323 cataagc 11632317
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>ref|XM_479593.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2583

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                
Query: 495  tcttcacaggttaaggcacgtcttacagaaaggtttgcagccaaagagcaat 546
            ||||||||| | |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 967  tcttcacagatcaaggcacgccttacagaaaggtttgctgccaaagagcaat 1018
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                    
Query: 495      tcttcacaggttaaggcacgtcttacagaaaggtttgcagccaaagagcaat 546
                ||||||||| | |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 29105028 tcttcacagatcaaggcacgccttacagaaaggtttgctgccaaagagcaat 29104977



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 351      aaagaattggatgcatgctt 370
                ||||||||||||||||||||
Sbjct: 26481422 aaagaattggatgcatgctt 26481403
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>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                 
Query: 495   tcttcacaggttaaggcacgtcttacagaaaggtttgcagccaaagagcaat 546
             ||||||||| | |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 40146 tcttcacagatcaaggcacgccttacagaaaggtttgctgccaaagagcaat 40095
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>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                 
Query: 495   tcttcacaggttaaggcacgtcttacagaaaggtttgcagccaaagagcaat 546
             ||||||||| | |||||||| ||||||||||||||||| |||||||||||||
Sbjct: 52985 tcttcacagatcaaggcacgccttacagaaaggtttgctgccaaagagcaat 52934
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>gb|AC009712.22| Homo sapiens chromosome 15, clone RP11-361M10, complete sequence
          Length = 213746

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 77    ttcagatggaaatgacacaagtcta 101
             |||| ||||||||||||||||||||
Sbjct: 57320 ttcatatggaaatgacacaagtcta 57344
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>emb|CR769783.10| Zebrafish DNA sequence from clone DKEY-40A23 in linkage group 1, complete
              sequence
          Length = 222035

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 388    aaatgagcgagcttaacatgctcag 412
              ||||||| |||||||||||||||||
Sbjct: 130308 aaatgagtgagcttaacatgctcag 130332
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>emb|AL392085.12| Human DNA sequence from clone RP11-225L6 on chromosome 9 Contains part of
              the ASTN2 gene for astrotactin2 (KIAA0634), complete
              sequence
          Length = 159836

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 69     gtgtgtgattcagatggaaatgaca 93
              |||||||| ||||||||||||||||
Sbjct: 131513 gtgtgtgaatcagatggaaatgaca 131537
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>emb|Z35783.1|SCYBL022C S.cerevisiae chromosome II reading frame ORF YBL022c
          Length = 4136

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 306  aagaacttggaagaagatactgatg 330
            ||||||| |||||||||||||||||
Sbjct: 3068 aagaactcggaagaagatactgatg 3044
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>emb|X74544.1|SCPIM1 S.cerevisiae PIM1 gene for mitochondrial ATP-dependent protease
          Length = 4834

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 306  aagaacttggaagaagatactgatg 330
            ||||||| |||||||||||||||||
Sbjct: 1510 aagaactcggaagaagatactgatg 1534
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>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains
             the gene for a novel protein (zgc:63880), the 3' end of
             the gene for a novel protein similar to vertebrate KCND2,
             the 5' end of the ing3 gene for inhibitor of growth family
             member 3 and a CpG island, complete sequence
          Length = 200582

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 83    tggaaatgacacaagtctatt 103
             |||||||||||||||||||||
Sbjct: 74274 tggaaatgacacaagtctatt 74254
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>gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, complete sequence
          Length = 127715

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 527    gtttgcagccaaagagcaata 547
              |||||||||||||||||||||
Sbjct: 109228 gtttgcagccaaagagcaata 109248
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>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence
          Length = 202381

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 77    ttcagatggaaatgacacaagtcta 101
             |||| ||||||||||||||||||||
Sbjct: 36510 ttcacatggaaatgacacaagtcta 36486
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>gb|DQ332499.1| Synthetic construct Saccharomyces cerevisiae clone FLH202942.01X
           PIM1 gene, complete sequence
          Length = 3402

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 306 aagaacttggaagaagatactgatg 330
           ||||||| |||||||||||||||||
Sbjct: 682 aagaactcggaagaagatactgatg 706
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>gb|L28110.1|YSCPDQLONA Saccharomyces cerevisiae (LON) mRNA, complete cds
          Length = 3555

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 306 aagaacttggaagaagatactgatg 330
           ||||||| |||||||||||||||||
Sbjct: 748 aagaactcggaagaagatactgatg 772
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>ref|NM_121016.2| Arabidopsis thaliana DNA binding / protein binding / zinc ion
           binding AT5G09790 mRNA, complete cds
          Length = 1359

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tttgaaggatcttctgataa 121
           ||||||||||||||||||||
Sbjct: 901 tttgaaggatcttctgataa 882
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>ref|XM_526804.1| PREDICTED: Pan troglodytes similar to polymerase (DNA directed) nu;
           DNA polymerase POL4P; DNA polymerase N (LOC471423), mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 ttggaagaagatactgatga 331
           ||||||||||||||||||||
Sbjct: 532 ttggaagaagatactgatga 551
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>ref|XM_526803.1| PREDICTED: Pan troglodytes similar to polymerase (DNA directed) nu;
           DNA polymerase POL4P; DNA polymerase N (LOC471422), mRNA
          Length = 1371

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 ttggaagaagatactgatga 331
           ||||||||||||||||||||
Sbjct: 340 ttggaagaagatactgatga 359
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>ref|XM_479268.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5904

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 351  aaagaattggatgcatgctt 370
            ||||||||||||||||||||
Sbjct: 2155 aaagaattggatgcatgctt 2174
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>gb|AC139025.9| Mus musculus chromosome 8, clone RP23-426K13, complete sequence
          Length = 203230

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    ttgaaggcgagatctgtgtgtgat 77
             ||||||| ||||||||||||||||
Sbjct: 41251 ttgaaggagagatctgtgtgtgat 41274
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>ref|XM_429341.1| PREDICTED: Gallus gallus LOC415563 (LOC415563), mRNA
          Length = 1600

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 466  aagacagaaaacaattggca 485
            ||||||||||||||||||||
Sbjct: 1015 aagacagaaaacaattggca 996
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>ref|NM_031374.1| Mus musculus testis expressed gene 15 (Tex15), mRNA
          Length = 8422

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   ttgaaggcgagatctgtgtgtgat 77
            ||||||| ||||||||||||||||
Sbjct: 7495 ttgaaggagagatctgtgtgtgat 7472
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>ref|NM_181808.1| Homo sapiens polymerase (DNA directed) nu (POLN), mRNA
          Length = 2899

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 ttggaagaagatactgatga 331
           ||||||||||||||||||||
Sbjct: 520 ttggaagaagatactgatga 539
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>gb|AC148981.7| Mus musculus BAC clone RP23-201L15 from chromosome 7, complete sequence
          Length = 223522

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 494    atcttcacaggttaaggcac 513
              ||||||||||||||||||||
Sbjct: 188648 atcttcacaggttaaggcac 188667
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>emb|AL158068.18| Human DNA sequence from clone RP11-478C1 on chromosome 4, complete
              sequence
          Length = 178338

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    ttggaagaagatactgatga 331
              ||||||||||||||||||||
Sbjct: 141827 ttggaagaagatactgatga 141846
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>emb|AL133551.13| Human DNA sequence from clone RP11-57G10 on chromosome 10 Contains a
             ribosomal protein L21 (RPL21) pseudogene, the gene for
             J-domain containing protein 1 (JDP1), a ribosomal protein
             L12 (RPL12) pseudogene, a novel pseudogene, the SIRT1 gene
             for sirtuin (silent mating type information regulation 2
             homolog) 1 (S. cerevisiae), the 3' end of the gene for a
             novel protein (KIAA0032) and two CpG island, complete
             sequence
          Length = 175940

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   taacaagaacttggaagaag 321
             ||||||||||||||||||||
Sbjct: 28731 taacaagaacttggaagaag 28712
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>gb|AY136549.1| Homo sapiens DNA polymerase N mRNA, complete cds
          Length = 2899

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 ttggaagaagatactgatga 331
           ||||||||||||||||||||
Sbjct: 520 ttggaagaagatactgatga 539
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>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3
          Length = 315079

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     tctatttgaaggatcttctg 117
              ||||||||||||||||||||
Sbjct: 119517 tctatttgaaggatcttctg 119536
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>gb|AC010328.4| Homo sapiens chromosome 19 clone CITB-E1_2620I22, complete sequence
          Length = 196686

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   tatggttccttctgaagaaa 390
             ||||||||||||||||||||
Sbjct: 72524 tatggttccttctgaagaaa 72543
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>gb|AY120701.1| Arabidopsis thaliana AT5g09790/F17I14_20 mRNA, complete cds
          Length = 1059

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tttgaaggatcttctgataa 121
           ||||||||||||||||||||
Sbjct: 827 tttgaaggatcttctgataa 808
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>gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, complete sequence
          Length = 198846

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 411    agggataagagattgaactcaact 434
              ||||| ||||||||||||||||||
Sbjct: 100723 agggaaaagagattgaactcaact 100700
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>gb|AC090810.14| Homo sapiens chromosome 8, clone RP11-48J8, complete sequence
          Length = 168587

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    gatcttctgataatttttct 128
              ||||||||||||||||||||
Sbjct: 103033 gatcttctgataatttttct 103014
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>gb|AY064131.1| Arabidopsis thaliana AT5g09790/F17I14_20 mRNA, complete cds
          Length = 1360

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tttgaaggatcttctgataa 121
           ||||||||||||||||||||
Sbjct: 901 tttgaaggatcttctgataa 882
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>gb|AC006271.2|AC006271 Homo sapiens chromosome 19, BAC BC319430 (CTC-440L2), complete sequence
          Length = 100598

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 411   agggataagagattgaactcaact 434
             ||||| ||||||||||||||||||
Sbjct: 84245 agggaaaagagattgaactcaact 84268
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>gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome
          Length = 615980

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   ttatggttccttctgaagaa 389
             ||||||||||||||||||||
Sbjct: 49744 ttatggttccttctgaagaa 49725
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>gb|AF285589.1|AF285589 Mus musculus testis protein TEX15 (Tex15) mRNA, complete cds
          Length = 8422

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   ttgaaggcgagatctgtgtgtgat 77
            ||||||| ||||||||||||||||
Sbjct: 7495 ttgaaggagagatctgtgtgtgat 7472
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>gb|BC063106.1| Mus musculus testis expressed gene 15, mRNA (cDNA clone
            IMAGE:6312096)
          Length = 2684

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   ttgaaggcgagatctgtgtgtgat 77
            ||||||| ||||||||||||||||
Sbjct: 1716 ttgaaggagagatctgtgtgtgat 1693
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>gb|DQ060036.1| Homo sapiens polymerase (DNA directed) nu (POLN) gene, complete cds
          Length = 161222

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ttggaagaagatactgatga 331
             ||||||||||||||||||||
Sbjct: 23022 ttggaagaagatactgatga 23041
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>emb|BX830582.1|CNS0A1IA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB91ZC08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 468

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tttgaaggatcttctgataa 121
           ||||||||||||||||||||
Sbjct: 74  tttgaaggatcttctgataa 55
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>emb|BX831582.1|CNS0A161 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH16ZF06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1316

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  tttgaaggatcttctgataa 121
            ||||||||||||||||||||
Sbjct: 1004 tttgaaggatcttctgataa 985
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>gb|AC079762.7| Homo sapiens BAC clone RP11-150F12 from 2, complete sequence
          Length = 163408

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    tatggatattcagtgaatcc 232
              ||||||||||||||||||||
Sbjct: 159529 tatggatattcagtgaatcc 159510
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>ref|XM_214365.3| PREDICTED: Rattus norvegicus testis expressed gene 15 (predicted)
            (Tex15_predicted), mRNA
          Length = 9293

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   ttgaaggcgagatctgtgtgtgat 77
            ||||||||| ||||||||||||||
Sbjct: 8380 ttgaaggcgcgatctgtgtgtgat 8357
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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1340_C08
          Length = 192167

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   aaagaattggatgcatgctt 370
             ||||||||||||||||||||
Sbjct: 26693 aaagaattggatgcatgctt 26674
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>dbj|AB020752.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTH16
          Length = 68098

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tttgaaggatcttctgataa 121
             ||||||||||||||||||||
Sbjct: 60381 tttgaaggatcttctgataa 60400
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>emb|BX537309.10| Zebrafish DNA sequence from clone CH211-225N7 in linkage group 19,
             complete sequence
          Length = 85767

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tttgaaggatcttctgataa 121
             ||||||||||||||||||||
Sbjct: 60964 tttgaaggatcttctgataa 60983
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>emb|AL929171.9| Zebrafish DNA sequence from clone CH211-132P20 in linkage group 4,
             complete sequence
          Length = 176577

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    tgtgattcagatggaaatga 91
             ||||||||||||||||||||
Sbjct: 90968 tgtgattcagatggaaatga 90949
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>emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA
            project)
          Length = 92491

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  tttgaaggatcttctgataa 121
            ||||||||||||||||||||
Sbjct: 9203 tttgaaggatcttctgataa 9184
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>gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, complete sequence
          Length = 195652

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 494    atcttcacaggttaaggcac 513
              ||||||||||||||||||||
Sbjct: 150137 atcttcacaggttaaggcac 150156
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>emb|Z49918.1|HSL124H12 Human DNA sequence from clone LA04NC01-124H12 on chromosome 4, complete
             sequence
          Length = 30110

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ttggaagaagatactgatga 331
             ||||||||||||||||||||
Sbjct: 21891 ttggaagaagatactgatga 21910


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,381,382
Number of Sequences: 3902068
Number of extensions: 5381382
Number of successful extensions: 99158
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98986
Number of HSP's gapped (non-prelim): 166
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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