Clone Name	bags36c19
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK066566.1| Oryza sativa (japonica cultivar-group) cDNA clon...	206	4e-50
2	dbj|AK063424.1| Oryza sativa (japonica cultivar-group) cDNA clon...	206	4e-50
3	dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...	111	2e-21
4	dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic D...	111	2e-21
5	dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic D...	111	2e-21
6	ref|NM_123604.2| Arabidopsis thaliana metalloendopeptidase AT5G4...	46	0.076
7	gb|BT000785.1| Arabidopsis thaliana clone RAFL07-08-B09 (R11000)...	46	0.076
8	emb|BX323575.10| Zebrafish DNA sequence from clone CH211-278N20 ...	46	0.076
9	dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...	46	0.076
10	gb|AF008444.1|AF008444 Arabidopsis thaliana chloroplast processi...	46	0.076
11	emb|AL445245.12| Human DNA sequence from clone RP4-690O18 on chr...	44	0.30
12	emb|AL080286.16|HSDJ655C4 Human DNA sequence from clone RP4-655C...	44	0.30
13	ref|NM_103572.2| Arabidopsis thaliana ATP binding / DNA binding ...	42	1.2
14	gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ...	42	1.2
15	gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosom...	42	1.2
16	emb|AL139389.16| Human DNA sequence from clone RP11-411K7 on chr...	42	1.2
17	gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsis tha...	42	1.2
18	gb|AC102606.12| Mus musculus chromosome 7, clone RP23-390N24, co...	42	1.2
19	emb|AL671229.11| Mouse DNA sequence from clone RP23-93N10 on chr...	42	1.2
20	gb|AF129756.1|DJ201G24 Homo sapiens MSH55 gene, partial cds; and...	40	4.7
21	gb|AC129193.4| Mus musculus BAC clone RP24-136L12 from chromosom...	40	4.7
22	emb|CR942185.8| Human DNA sequence from clone DAMC-81L12 on chro...	40	4.7
23	gb|AC121987.2| Mus musculus BAC clone RP24-294E6 from 9, complet...	40	4.7
24	emb|BX248519.7| Human DNA sequence from clone DASS-280D8 on chro...	40	4.7
25	emb|AL929587.5| Human DNA sequence from clone DAQB-87N14 on chro...	40	4.7
26	emb|AL662801.7| Human DNA sequence from clone XXbac-296P20 on ch...	40	4.7
27	emb|AL662847.6| Human DNA sequence from clone XXbac-270M2 on chr...	40	4.7
28	emb|CR753892.5| Human DNA sequence from clone DADB-70P7 on chrom...	40	4.7
29	emb|CR759886.7| Human DNA sequence from clone DAAP-90L16 on chro...	40	4.7
30	dbj|AB210168.1| Pan troglodytes LTB gene for lymphotoxin-beta is...	40	4.7
31	dbj|AB210167.1| Pan troglodytes LTB gene for lymphotoxin-beta is...	40	4.7
32	dbj|AB202114.1| Homo sapiens LTB gene for lymphotoxin beta (TNF ...	40	4.7
33	gb|AY070219.1| Homo sapiens lymphotoxin beta (TNF superfamily, m...	40	4.7
34	gb|AC136767.6| Homo sapiens chromosome 11, clone RP13-25N22, com...	40	4.7
35	emb|BX927320.5| Human DNA sequence from clone DAMA-25N12 on chro...	40	4.7
36	gb|AC103791.17| Homo sapiens chromosome 11, clone CTD-2026O3, co...	40	4.7
37	gb|AY216497.1| Homo sapiens lymphotoxin beta (TNF superfamily, m...	40	4.7
38	gb|AY214167.1| Homo sapiens tumor necrosis factor (TNF superfami...	40	4.7
39	dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA...	40	4.7
40	dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co...	40	4.7
41	dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	4.7
42	dbj|AB054536.1| Pan troglodytes LTB, TNF alpha, LTA, IKBL, ATP6G...	40	4.7
43	dbj|AB088106.1| Homo sapiens LTB gene for lymphotoxin beta, comp...	40	4.7
44	emb|Y14768.1|HSY14768 Homo sapiens DNA, cosmid clones TN62 and TN82	40	4.7
45	gb|L11016.1|HUMLYTOXBB Homo sapiens lymphotoxin-beta gene, compl...	40	4.7
46	emb|Z15026.1|HSTNFABX Homo sapiens TNFa and gene for tumor necro...	40	4.7

---

>dbj|AK066566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073O18, full
            insert sequence
          Length = 3520

 Score =  206 bits (104), Expect = 4e-50
 Identities = 206/240 (85%)
 Strand = Plus / Plus

                                                                        
Query: 13   atcttgtgttcttgattatcttgggactgtaagtgctgcaaaatctccaaacaaagagga 72
            ||||||||||||||| |||||||||||||| |||||| |||||||| |||| | | ||||
Sbjct: 2130 atcttgtgttcttgactatcttgggactgtgagtgctccaaaatcttcaaaaacacagga 2189

                                                                        
Query: 73   gcgtatcgagaagatttccttcctgccatccccatcggatctgcatctccagcaagtata 132
            || ||| |||||||||||||||||||| |  || |||||  ||||| | |||||||||||
Sbjct: 2190 gcatattgagaagatttccttcctgccgtttccttcggacttgcattttcagcaagtata 2249

                                                                        
Query: 133  cataaaggatacagatgagagagcttgtgcatatattgcaggcccggcacctaaccgatg 192
            |||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| || ||
Sbjct: 2250 cataaaggatactgatgagagagcttgtgcctacattgctggccctgcacctaatcgctg 2309

                                                                        
Query: 193  ggggtttgccactgaaggaaaagatctcttcaatgatattcgaagttctagcgcagatgc 252
            ||||||||| |||||||| || ||||| |||||||  || || |||||||| | ||||||
Sbjct: 2310 ggggtttgcaactgaagggaatgatctattcaatgtcatccggagttctagtggagatgc 2369



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                      
Query: 294  acgttcgcaaccatcctcttttctttggcattgctttgagtttactggctgaaattat 351
            ||||||||| |||| |||| |||||||||||  ||||||||||  |||||||||||||
Sbjct: 2420 acgttcgcagccattctctgttctttggcatcactttgagtttgttggctgaaattat 2477

---

>dbj|AK063424.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C08, full
            insert sequence
          Length = 2563

 Score =  206 bits (104), Expect = 4e-50
 Identities = 206/240 (85%)
 Strand = Plus / Plus

                                                                        
Query: 13   atcttgtgttcttgattatcttgggactgtaagtgctgcaaaatctccaaacaaagagga 72
            ||||||||||||||| |||||||||||||| |||||| |||||||| |||| | | ||||
Sbjct: 1869 atcttgtgttcttgactatcttgggactgtgagtgctccaaaatcttcaaaaacacagga 1928

                                                                        
Query: 73   gcgtatcgagaagatttccttcctgccatccccatcggatctgcatctccagcaagtata 132
            || ||| |||||||||||||||||||| |  || |||||  ||||| | |||||||||||
Sbjct: 1929 gcatattgagaagatttccttcctgccgtttccttcggacttgcattttcagcaagtata 1988

                                                                        
Query: 133  cataaaggatacagatgagagagcttgtgcatatattgcaggcccggcacctaaccgatg 192
            |||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| || ||
Sbjct: 1989 cataaaggatactgatgagagagcttgtgcctacattgctggccctgcacctaatcgctg 2048

                                                                        
Query: 193  ggggtttgccactgaaggaaaagatctcttcaatgatattcgaagttctagcgcagatgc 252
            ||||||||| |||||||| || ||||| |||||||  || || |||||||| | ||||||
Sbjct: 2049 ggggtttgcaactgaagggaatgatctattcaatgtcatccggagttctagtggagatgc 2108



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                      
Query: 294  acgttcgcaaccatcctcttttctttggcattgctttgagtttactggctgaaattat 351
            ||||||||| |||| |||| |||||||||||  ||||||||||  |||||||||||||
Sbjct: 2159 acgttcgcagccattctctgttctttggcatcactttgagtttgttggctgaaattat 2216

---

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                            
Query: 128      gtatacataaaggatacagatgagagagcttgtgcatatattgcaggcccggcacctaac 187
                ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| 
Sbjct: 24819637 gtatacataaaggatactgatgagagagcttgtgcctacattgctggccctgcacctaat 24819578

                                                        
Query: 188      cgatgggggtttgccactgaaggaaaagatctcttcaatg 227
                || ||||||||||| |||||||| || ||||| |||||||
Sbjct: 24819577 cgctgggggtttgcaactgaagggaatgatctattcaatg 24819538



 Score =  101 bits (51), Expect = 1e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                            
Query: 13       atcttgtgttcttgattatcttgggactgtaagtgctgcaaaatctccaaacaaagagga 72
                ||||||||||||||| |||||||||||||| |||||| |||||||| |||| | | ||||
Sbjct: 24819925 atcttgtgttcttgactatcttgggactgtgagtgctccaaaatcttcaaaaacacagga 24819866

                                           
Query: 73       gcgtatcgagaagatttccttcctgcc 99
                || ||| ||||||||||||||||||||
Sbjct: 24819865 gcatattgagaagatttccttcctgcc 24819839



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                          
Query: 294      acgttcgcaaccatcctcttttctttggcattgctttgagtttactggctgaaattat 351
                ||||||||| |||| |||| |||||||||||  ||||||||||  |||||||||||||
Sbjct: 24819350 acgttcgcagccattctctgttctttggcatcactttgagtttgttggctgaaattat 24819293

---

>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0072A21
          Length = 158287

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                         
Query: 128   gtatacataaaggatacagatgagagagcttgtgcatatattgcaggcccggcacctaac 187
             ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| 
Sbjct: 30720 gtatacataaaggatactgatgagagagcttgtgcctacattgctggccctgcacctaat 30661

                                                     
Query: 188   cgatgggggtttgccactgaaggaaaagatctcttcaatg 227
             || ||||||||||| |||||||| || ||||| |||||||
Sbjct: 30660 cgctgggggtttgcaactgaagggaatgatctattcaatg 30621



 Score =  101 bits (51), Expect = 1e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                         
Query: 13    atcttgtgttcttgattatcttgggactgtaagtgctgcaaaatctccaaacaaagagga 72
             ||||||||||||||| |||||||||||||| |||||| |||||||| |||| | | ||||
Sbjct: 31008 atcttgtgttcttgactatcttgggactgtgagtgctccaaaatcttcaaaaacacagga 30949

                                        
Query: 73    gcgtatcgagaagatttccttcctgcc 99
             || ||| ||||||||||||||||||||
Sbjct: 30948 gcatattgagaagatttccttcctgcc 30922



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 294   acgttcgcaaccatcctcttttctttggcattgctttgagtttactggctgaaattat 351
             ||||||||| |||| |||| |||||||||||  ||||||||||  |||||||||||||
Sbjct: 30433 acgttcgcagccattctctgttctttggcatcactttgagtttgttggctgaaattat 30376

---

>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0029G06
          Length = 169711

 Score =  111 bits (56), Expect = 2e-21
 Identities = 89/100 (89%)
 Strand = Plus / Minus

                                                                          
Query: 128    gtatacataaaggatacagatgagagagcttgtgcatatattgcaggcccggcacctaac 187
              ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| 
Sbjct: 153318 gtatacataaaggatactgatgagagagcttgtgcctacattgctggccctgcacctaat 153259

                                                      
Query: 188    cgatgggggtttgccactgaaggaaaagatctcttcaatg 227
              || ||||||||||| |||||||| || ||||| |||||||
Sbjct: 153258 cgctgggggtttgcaactgaagggaatgatctattcaatg 153219



 Score =  101 bits (51), Expect = 1e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                          
Query: 13     atcttgtgttcttgattatcttgggactgtaagtgctgcaaaatctccaaacaaagagga 72
              ||||||||||||||| |||||||||||||| |||||| |||||||| |||| | | ||||
Sbjct: 153606 atcttgtgttcttgactatcttgggactgtgagtgctccaaaatcttcaaaaacacagga 153547

                                         
Query: 73     gcgtatcgagaagatttccttcctgcc 99
              || ||| ||||||||||||||||||||
Sbjct: 153546 gcatattgagaagatttccttcctgcc 153520



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                        
Query: 294    acgttcgcaaccatcctcttttctttggcattgctttgagtttactggctgaaattat 351
              ||||||||| |||| |||| |||||||||||  ||||||||||  |||||||||||||
Sbjct: 153031 acgttcgcagccattctctgttctttggcatcactttgagtttgttggctgaaattat 152974

---

>ref|NM_123604.2| Arabidopsis thaliana metalloendopeptidase AT5G42390 mRNA, complete
            cds
          Length = 4308

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 137  aaggatacagatgagagagcttgtgcatatattgc 171
            |||||||| ||||||||||| |||||||| |||||
Sbjct: 3064 aaggatactgatgagagagcatgtgcatacattgc 3098

---

>gb|BT000785.1| Arabidopsis thaliana clone RAFL07-08-B09 (R11000) putative pitrilysin
            (At5g42390) mRNA, complete cds
          Length = 4221

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 137  aaggatacagatgagagagcttgtgcatatattgc 171
            |||||||| ||||||||||| |||||||| |||||
Sbjct: 3064 aaggatactgatgagagagcatgtgcatacattgc 3098

---

>emb|BX323575.10| Zebrafish DNA sequence from clone CH211-278N20 in linkage group 18,
              complete sequence
          Length = 151144

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 144    cagatgagagagcttgtgcatat 166
              |||||||||||||||||||||||
Sbjct: 136330 cagatgagagagcttgtgcatat 136308

---

>dbj|AB016888.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9
          Length = 85791

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 137   aaggatacagatgagagagcttgtgcatatattgc 171
             |||||||| ||||||||||| |||||||| |||||
Sbjct: 29793 aaggatactgatgagagagcatgtgcatacattgc 29827

---

>gb|AF008444.1|AF008444 Arabidopsis thaliana chloroplast processing enzyme (CPE) gene,
            complete cds
          Length = 7875

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 137  aaggatacagatgagagagcttgtgcatatattgc 171
            |||||||| ||||||||||| |||||||| |||||
Sbjct: 5971 aaggatactgatgagagagcatgtgcatacattgc 6005

---

>emb|AL445245.12| Human DNA sequence from clone RP4-690O18 on chromosome 1, complete
             sequence
          Length = 51112

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 87    tttccttcctgccatccccatc 108
             ||||||||||||||||||||||
Sbjct: 49927 tttccttcctgccatccccatc 49948

---

>emb|AL080286.16|HSDJ655C4 Human DNA sequence from clone RP4-655C4 on chromosome 1p32.3-34.3
           Contains a ferritin light polypeptide (FTL) pseudogene,
           complete sequence
          Length = 155278

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  tttccttcctgccatccccatc 108
           ||||||||||||||||||||||
Sbjct: 815 tttccttcctgccatccccatc 836

---

>ref|NM_103572.2| Arabidopsis thaliana ATP binding / DNA binding / DNA-dependent
           ATPase AT1G44900 mRNA, complete cds
          Length = 2950

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 206 gaaggaaaagatctcttcaatgata 230
           |||||| ||||||||||||||||||
Sbjct: 220 gaaggagaagatctcttcaatgata 244

---

>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete
           sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 220 cttcaatgatattcgaagttctagc 244
           |||||| ||||||||||||||||||
Sbjct: 118 cttcaaagatattcgaagttctagc 142

---

>gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosome 8, complete sequence
          Length = 199356

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 220   cttcaatgatattcgaagttctagc 244
             |||||| ||||||||||||||||||
Sbjct: 18760 cttcaaagatattcgaagttctagc 18736

---

>emb|AL139389.16| Human DNA sequence from clone RP11-411K7 on chromosome 6 Contains the
            3' end of a novel gene, an enhancer of rudimentary
            homolog (Drosophila)(ERH) pseudogene, the 5' end of a
            novel gene and a novel gene, complete sequence
          Length = 156721

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 52   aaaatctccaaacaaagagga 72
            |||||||||||||||||||||
Sbjct: 5905 aaaatctccaaacaaagagga 5925

---

>gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 115421

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 206   gaaggaaaagatctcttcaatgata 230
             |||||| ||||||||||||||||||
Sbjct: 83180 gaaggagaagatctcttcaatgata 83204

---

>gb|AC102606.12| Mus musculus chromosome 7, clone RP23-390N24, complete sequence
          Length = 188836

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 145   agatgagagagcttgtgcatatatt 169
             ||||||||||||||||| |||||||
Sbjct: 83197 agatgagagagcttgtgaatatatt 83173

---

>emb|AL671229.11| Mouse DNA sequence from clone RP23-93N10 on chromosome 4, complete
              sequence
          Length = 237082

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 320    ggcattgctttgagtttactg 340
              |||||||||||||||||||||
Sbjct: 185462 ggcattgctttgagtttactg 185482

---

>gb|AF129756.1|DJ201G24 Homo sapiens MSH55 gene, partial cds; and CLIC1, DDAH, G6b, G6c, G5b,
              G6d, G6e, G6f, BAT5, G5b, CSK2B, BAT4, G4, Apo M, BAT3,
              BAT2, AIF-1, 1C7, LST-1, LTB, TNF, and LTA genes, complete
              cds
          Length = 184666

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tccttcctgccatccccatc 108
              ||||||||||||||||||||
Sbjct: 170068 tccttcctgccatccccatc 170049

---

>gb|AC129193.4| Mus musculus BAC clone RP24-136L12 from chromosome 9, complete sequence
          Length = 181376

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     ttgattatcttgggactgta 43
              ||||||||||||||||||||
Sbjct: 138388 ttgattatcttgggactgta 138407

---

>emb|CR942185.8| Human DNA sequence from clone DAMC-81L12 on chromosome 6, complete
             sequence
          Length = 55481

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tccttcctgccatccccatc 108
             ||||||||||||||||||||
Sbjct: 35365 tccttcctgccatccccatc 35384

---

>gb|AC121987.2| Mus musculus BAC clone RP24-294E6 from 9, complete sequence
          Length = 176642

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ttgattatcttgggactgta 43
             ||||||||||||||||||||
Sbjct: 66631 ttgattatcttgggactgta 66650

---

>emb|BX248519.7| Human DNA sequence from clone DASS-280D8 on chromosome 6 Contains the
             LTA gene for lymphotoxin alpha (TNF superfamily, member
             1), the TNF gene for tumor necrosis factor (TNF
             superfamily, member 2), the LTB gene for lymphotoxin beta
             (TNF superfamily, member 3), the LST1 gene for leukocyte
             specific transcript 1, the NCR3 gene for natural
             cytotoxicity triggering receptor 3, and 1 CpG island,
             complete sequence
          Length = 40160

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tccttcctgccatccccatc 108
             ||||||||||||||||||||
Sbjct: 12371 tccttcctgccatccccatc 12390

---

>emb|AL929587.5| Human DNA sequence from clone DAQB-87N14 on chromosome 6 Contains the
             3'end of the NFKBIL1 gene, the nuclear factor of kappa
             light polypeptide gene enhancer in B-cells inhibitor-like
             1, the LTA gene for lymphotoxin alpha (TNF superfamily,
             member 1), the TNF gene for tumor necrosis factor (TNF
             superfamily, member 2), the LTB gene for lymphotoxin beta
             (TNF superfamily, member 3), the LST1 gene for leukocyte
             specific transcript 1, the NCR3 gene for natural
             cytotoxicity triggering receptor 3, the pseudogene
             UQCRHP1, ubiquinol-cytochrome c reductase hinge protein
             pseudogene 1 and 1 CpG island, complete sequence
          Length = 61358

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tccttcctgccatccccatc 108
             ||||||||||||||||||||
Sbjct: 27810 tccttcctgccatccccatc 27829

---

>emb|AL662801.7| Human DNA sequence from clone XXbac-296P20 on chromosome 6 contains a
             ribosomal protein L15 (RPL15) pseudogene, the BAT1 gene
             for HLA-B associated transcript 1, the ATP6V1G gene for
             ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G,
             the NFKBIL1 gene for nuclear factor of kappa light
             polypeptide gene enhancer in B-cells inhibitor-like 1, the
             LTA gene for lymphotoxin alpha, the TNF gene for tumour
             necrosis factor, the LTB gene for lymphotoxin beta, the
             LST1 gene for leukocyte specific transcript 1, the LY117
             gene for lymphocyte antigen 117, the AIF1 gene for
             alograft imflammatory factor 1, the BAT2 gene for HLA-B
             associated transcript 2, the BAT3 gene for HLA-B
             associated transcript 3, the APOM gene for apolipoprotein
             M, the 3' end of the gene for chromosome 6, open reading
             frame 47 and four CpG islands, complete sequence
          Length = 132330

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tccttcctgccatccccatc 108
             ||||||||||||||||||||
Sbjct: 52648 tccttcctgccatccccatc 52667

---

>emb|AL662847.6| Human DNA sequence from clone XXbac-270M2 on chromosome 6 contains the
             gene for a novel protein similar to similar to
             peptidyl-prolyl cis-trans isomerase A (PPIase), a
             ribosomal protein L15 (RPL15) pseudogene, the BAT1 gene
             for HLA-B associated transcript 1, the ATP6V1G gene for
             ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G,
             the NFKBIL1 gene for nuclear factor of kappa light
             polypeptide gene enhancer in B-cells inhibitor-like 1, the
             LTA gene for lymphotoxin alpha, the TNF gene for tumour
             necrosis factor, the LTB gene for lymphotoxin beta, the
             LST1 gene for leukocyte specific transcript 1, the LY117
             gene for lymphocyte antigen 117, the AIF1 gene for
             alograft imflammatory factor 1, the BAT2 gene for HLA-B
             associated transcript 2, the 3' end of the BAT3 gene for
             HLA-B associated transcript 3 and two CpG islands,
             complete sequence
          Length = 135784

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tccttcctgccatccccatc 108
             ||||||||||||||||||||
Sbjct: 66414 tccttcctgccatccccatc 66433

---

>emb|CR753892.5| Human DNA sequence from clone DADB-70P7 on chromosome 6, complete
             sequence
          Length = 101422

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tccttcctgccatccccatc 108
             ||||||||||||||||||||
Sbjct: 36829 tccttcctgccatccccatc 36848

---

>emb|CR759886.7| Human DNA sequence from clone DAAP-90L16 on chromosome 6, complete
            sequence
          Length = 15997

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 4041 tccttcctgccatccccatc 4060

---

>dbj|AB210168.1| Pan troglodytes LTB gene for lymphotoxin-beta isoform a, complete
            cds, cell_line: Ericka
          Length = 4375

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 3133 tccttcctgccatccccatc 3114

---

>dbj|AB210167.1| Pan troglodytes LTB gene for lymphotoxin-beta isoform a, complete
            cds, cell_line: Borie
          Length = 4375

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 3133 tccttcctgccatccccatc 3114

---

>dbj|AB202114.1| Homo sapiens LTB gene for lymphotoxin beta (TNF superfamily, member
            3), complete cds
          Length = 4378

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 3134 tccttcctgccatccccatc 3115

---

>gb|AY070219.1| Homo sapiens lymphotoxin beta (TNF superfamily, member 3) (LTB) gene,
            complete cds, alternatively spliced
          Length = 4412

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 4024 tccttcctgccatccccatc 4005

---

>gb|AC136767.6| Homo sapiens chromosome 11, clone RP13-25N22, complete sequence
          Length = 76050

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 318   ttggcattgctttgagtttactgg 341
             ||||||||||||||||||| ||||
Sbjct: 23274 ttggcattgctttgagtttgctgg 23251

---

>emb|BX927320.5| Human DNA sequence from clone DAMA-25N12 on chromosome 6, complete
             sequence
          Length = 100409

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tccttcctgccatccccatc 108
             ||||||||||||||||||||
Sbjct: 79685 tccttcctgccatccccatc 79704

---

>gb|AC103791.17| Homo sapiens chromosome 11, clone CTD-2026O3, complete sequence
          Length = 66781

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 318  ttggcattgctttgagtttactgg 341
            ||||||||||||||||||| ||||
Sbjct: 7906 ttggcattgctttgagtttgctgg 7929

---

>gb|AY216497.1| Homo sapiens lymphotoxin beta (TNF superfamily, member 3) (LTB) gene,
            complete cds
          Length = 4569

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 4182 tccttcctgccatccccatc 4163

---

>gb|AY214167.1| Homo sapiens tumor necrosis factor (TNF superfamily, member 2) (TNF)
            gene, complete cds
          Length = 7240

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 6161 tccttcctgccatccccatc 6180

---

>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tccttcctgccatccccatc 108
              ||||||||||||||||||||
Sbjct: 364049 tccttcctgccatccccatc 364030

---

>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 5205 tccttcctgccatccccatc 5186

---

>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete
             sequence
          Length = 190267

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 318   ttggcattgctttgagtttactgg 341
             ||||||||||||||||||| ||||
Sbjct: 31551 ttggcattgctttgagtttgctgg 31528

---

>dbj|AB054536.1| Pan troglodytes LTB, TNF alpha, LTA, IKBL, ATP6G, BAT1, Patr-MIC and
            Patr-B genes, complete cds
          Length = 176284

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 5205 tccttcctgccatccccatc 5186

---

>dbj|AB088106.1| Homo sapiens LTB gene for lymphotoxin beta, complete cds
          Length = 4378

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 3134 tccttcctgccatccccatc 3115

---

>emb|Y14768.1|HSY14768 Homo sapiens DNA, cosmid clones TN62 and TN82
          Length = 81800

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    tccttcctgccatccccatc 108
             ||||||||||||||||||||
Sbjct: 39635 tccttcctgccatccccatc 39616

---

>gb|L11016.1|HUMLYTOXBB Homo sapiens lymphotoxin-beta gene, complete cds
          Length = 6305

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 89   tccttcctgccatccccatc 108
            ||||||||||||||||||||
Sbjct: 5212 tccttcctgccatccccatc 5193

---

>emb|Z15026.1|HSTNFABX Homo sapiens TNFa and gene for tumor necrosis factor and TNFb gene
           for lymphotoxin
          Length = 16310

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 89  tccttcctgccatccccatc 108
           ||||||||||||||||||||
Sbjct: 960 tccttcctgccatccccatc 941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,589,714
Number of Sequences: 3902068
Number of extensions: 3589714
Number of successful extensions: 72393
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72284
Number of HSP's gapped (non-prelim): 109
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---