ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags35n09 |
|---|---|
| Clone Library Name | barley_pub |
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 120 bits (300), Expect = 1e-27 Identities = 58/100 (58%), Positives = 76/100 (76%) Frame = +1 Query: 46 GSEQMRLDALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQAWSDAVERRALLRKD 225 G+ ++ DALR+AYD KGE+T L R++ +I RLG +Y +D AW +AV+RRA +K Sbjct: 61 GNHALQFDALRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWCEAVDRRAEQKKV 120 Query: 226 KLDSELNVYRTNLIKESIRMGYNDLGDFHYAQGHLXEAFK 345 KL++EL+ YRTNLIKESIRMGYND GDF+YA G L +AFK Sbjct: 121 KLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFK 160
>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| Length = 487 Score = 63.5 bits (153), Expect = 1e-10 Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 14/111 (12%) Frame = +1 Query: 55 QMRLDALRLAYDWALKGEDTXLHRDISVRIAGRL------------GSRY--AVDQAWSD 192 Q+R++AL++A + + + ++ DI ++A GS A+D +W + Sbjct: 69 QLRVEALKMALSFVQRTFNVDVYEDIHRKLAEASREVQNAPDAVPEGSMEPPALDTSWVE 128 Query: 193 AVERRALLRKDKLDSELNVYRTNLIKESIRMGYNDLGDFHYAQGHLXEAFK 345 A ++ALL+ +KLD++L Y+ N IKESIR G++DLGD + G L A K Sbjct: 129 ATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALK 179
>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) (MFH protein) Length = 471 Score = 61.2 bits (147), Expect = 6e-10 Identities = 29/59 (49%), Positives = 41/59 (69%) Frame = +1 Query: 169 AVDQAWSDAVERRALLRKDKLDSELNVYRTNLIKESIRMGYNDLGDFHYAQGHLXEAFK 345 A+D AW +A ++ALL+ +KLD++L Y+ N IKESIR G++DLGD + G L A K Sbjct: 105 ALDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALK 163
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 59.7 bits (143), Expect = 2e-09 Identities = 28/58 (48%), Positives = 40/58 (68%) Frame = +1 Query: 172 VDQAWSDAVERRALLRKDKLDSELNVYRTNLIKESIRMGYNDLGDFHYAQGHLXEAFK 345 +D AW +A ++ALL+ +KLD++L Y+ N IKESIR G++DLGD + G L A K Sbjct: 106 LDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALK 163
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 59.7 bits (143), Expect = 2e-09 Identities = 28/58 (48%), Positives = 40/58 (68%) Frame = +1 Query: 172 VDQAWSDAVERRALLRKDKLDSELNVYRTNLIKESIRMGYNDLGDFHYAQGHLXEAFK 345 +D AW +A ++ALL+ +KLD++L Y+ N IKESIR G++DLGD + G L A K Sbjct: 106 LDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALK 163
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 59.3 bits (142), Expect = 2e-09 Identities = 28/60 (46%), Positives = 40/60 (66%) Frame = +1 Query: 166 YAVDQAWSDAVERRALLRKDKLDSELNVYRTNLIKESIRMGYNDLGDFHYAQGHLXEAFK 345 +A D AW D ++A L+ +KLDS+L Y++N IKESIR G++DL D + + G L A K Sbjct: 156 FAYDAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTNALK 215
>CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (SGN1) Length = 422 Score = 35.4 bits (80), Expect = 0.035 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +1 Query: 172 VDQAWSDAVERRALLRKDKLDSELNVYRTNLIKESIRMGYNDLGDFHYAQGHLXEAFK 345 +D W ++V ++L EL Y+ NLI+ESIR DL F G A + Sbjct: 76 LDVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDLASFFADVGQFDSALR 133
>AMD1_XENLA (P08478) Peptidyl-glycine alpha-amidating monooxygenase 1 precursor| (EC 1.14.17.3) (Peptidyl-glycine alpha-amidating monooxygenase I) (Peptide C-terminal alpha-amidating enzyme I) (AE-I) Length = 400 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 64 LDALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQ 180 +D + Y WA T L + R+ G+ GSRY V Q Sbjct: 128 MDKSSIMYAWAKNAPPTKLPEGVGFRVGGKSGSRYFVLQ 166
>SYV_RICCN (Q92GR9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 812 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +1 Query: 220 KDKLDSELNVYRTNLIKESIRMGYNDLGDFHYAQG-HLXEAF 342 K+K+ +E + + N + E +++ N+L ++ YA HL E F Sbjct: 616 KEKITNEFDKWMVNKLVELVKLATNELQNYEYANAMHLTEKF 657
>SYV_RICFE (Q4UMX8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 859 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +1 Query: 220 KDKLDSELNVYRTNLIKESIRMGYNDLGDFHYAQG-HLXEAF 342 K+K+ +E + + N + E +++ N+L ++ YA HL E F Sbjct: 663 KEKITNEFDQWMINKLVELVKLATNELQNYEYANAMHLTEKF 704
>AMD_HUMAN (P19021) Peptidyl-glycine alpha-amidating monooxygenase precursor| (EC 1.14.17.3) (PAM) Length = 973 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 67 DALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQ 180 D + Y WA T L + + R+ G GS+Y V Q Sbjct: 128 DKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQ 165
>AMD_MOUSE (P97467) Peptidyl-glycine alpha-amidating monooxygenase precursor| (EC 1.14.17.3) (PAM) Length = 979 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 67 DALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQ 180 D + Y WA T L + + R+ G GS+Y V Q Sbjct: 132 DKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQ 169
>AMD_RAT (P14925) Peptidyl-glycine alpha-amidating monooxygenase precursor| (EC 1.14.17.3) (PAM) Length = 976 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 67 DALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQ 180 D + Y WA T L + + R+ G GS+Y V Q Sbjct: 133 DKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQ 170
>SYW1_STRCO (Q8CJX0) Tryptophanyl-tRNA synthetase 1 (EC 6.1.1.2)| (Tryptophan--tRNA ligase 1) (TrpRS 1) Length = 336 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Frame = +1 Query: 58 MRLDALRLAYDWALKGEDTXLH----RDISVRIAGRLGSRYAVDQAWSDAVERRAL 213 M D L D GED H RD++VR R G + V +A S AV R + Sbjct: 134 MAADILAYGTDEVPVGEDQTQHVELARDLAVRFNQRYGHTFVVPRATSPAVAARVM 189
>AMD_BOVIN (P10731) Peptidyl-glycine alpha-amidating monooxygenase precursor| (EC 1.14.17.3) (PAM) Length = 972 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 67 DALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQ 180 D + Y WA T L + + R+ G GS+Y V Q Sbjct: 128 DKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQ 165
>FAS_YEAST (P53848) Folic acid synthesis protein FOL1 [Includes:| Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA) (FASA) (FASB); 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphok Length = 824 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +1 Query: 193 AVERRALLRKDKLDSELNVYRTNLIKESIRMGYNDLGD 306 A+ L +DK+ ++ YR+N+ KE+I++G + + D Sbjct: 579 AIRESTELPQDKVILSIDTYRSNVAKEAIKVGVDIIND 616
>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6| Length = 3519 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Frame = +1 Query: 79 LAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQAWS-----DAVERRALLRKDKLDS 237 L W + G D R + R+A + AVD WS E RA+ +LDS Sbjct: 483 LVVPWVVSGRDARALRAQAARLAAHVSGVSAVDVGWSLVATRSVFEHRAVAIGSELDS 540 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = +1 Query: 79 LAYDWALKGEDTXLHRDISVRIAGRLGSRYA--VDQAWS-----DAVERRALLRKDKLDS 237 L W + G D R+ + R+A + S A VD WS E RA++ LDS Sbjct: 2132 LVVPWVVSGRDVGALREQAARLAAHVSSTGAGVVDVGWSLVATRSVFEHRAVMVGTDLDS 2191
>RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-)| Length = 1222 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Frame = +1 Query: 166 YAVDQAWSDAVERRALLRKDKL--DSELNVYRTNLIKESIRM 285 Y +D WS AVE +A+ R ++ + E+ VYR ++K+S+ M Sbjct: 1143 YMMDPWWSFAVEAQAIDRVHRMGQEDEVRVYRF-IVKQSVEM 1183
>KINL_LEICH (P46865) Kinesin-like protein K39 (Fragment)| Length = 955 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 11/70 (15%) Frame = +1 Query: 52 EQMRLDALRLAYDWALKGEDTXLHRDISVRIAGRLGSRY-----------AVDQAWSDAV 198 E++ D R+ Y++ +T L RD+++ A + +RY + W DA+ Sbjct: 612 ERLTRDLQRIQYEYG----ETELARDVALCAAQEMEARYHAAVFHLQTLLELATEWEDAL 667 Query: 199 ERRALLRKDK 228 RAL +D+ Sbjct: 668 RERALAERDE 677
>AMD2_XENLA (P12890) Peptidyl-glycine alpha-amidating monooxygenase 2 precursor| (EC 1.14.17.3) (Peptidyl-glycine alpha-amidating monooxygenase II) (Peptide C-terminal alpha-amidating enzyme II) (AE-II) Length = 875 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 67 DALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQ 180 D + Y WA T L + ++ G+ GSRY V Q Sbjct: 131 DKSSIMYAWAKNAPPTKLPEGVGFQVGGKSGSRYFVLQ 168
>SYT_RHILO (Q98LR2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 658 Score = 28.1 bits (61), Expect = 5.6 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 3/96 (3%) Frame = +1 Query: 10 RGAAPASSRXKCGSEQMRLDALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYAVDQAWS 189 RG + C EQ+ + LR+ D L +ISV+++ R R D+AW Sbjct: 386 RGFTQDDAHIFCTEEQLASECLRIN-DLILSTYADFGFDEISVKLSTRPDKRVGTDEAWD 444 Query: 190 DAVERRALLRKDKLDSELNVYRT---NLIKESIRMG 288 A + + S L RT N IK SI G Sbjct: 445 HA--------EAIMGSVLETIRTRSGNRIKTSINPG 472
>G6PDC_SPIOL (O24357) Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor| (EC 1.1.1.49) (G6PD) Length = 574 Score = 27.3 bits (59), Expect = 9.6 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +1 Query: 112 TXLHRDISVRIAGRLGSRYAVDQAWSDAVE--RRALLRKDKLDSELNVYRTNLIKE 273 T L+ S R G + Y ++ DA+E RR +R DKLD+ +++ T L+KE Sbjct: 482 TDLNLCYSTRYRGEIPDAY--ERLLLDAIEGERRLFIRSDKLDAAWSLF-TPLLKE 534
>UREA_CRYNV (O13465) Urease (EC 3.5.1.5) (Urea amidohydrolase)| Length = 832 Score = 27.3 bits (59), Expect = 9.6 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%) Frame = +1 Query: 13 GAAPASSRXKCGSEQMRL-------DALRLAYDWALKGEDTXLHRDISVRIAGRLGSRYA 171 G A S+ C S + D + L + + KG D+ + + AG G + Sbjct: 426 GPADGSNATTCTSSSFYMQNMIKATDTIPLNFGFTGKGSDSGTNAMRDIIEAGACGLKVH 485 Query: 172 VDQAWSDAVERRALLRKDKLDSELNVYRTNL 264 D + V RAL D+ D ++N++ L Sbjct: 486 EDWGATAEVIDRALSMADEYDVQINLHSDTL 516 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,749,537 Number of Sequences: 219361 Number of extensions: 443497 Number of successful extensions: 1709 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1660 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1709 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
