>gb|AF106844.1|AF106844 Oryza sativa rCOP11 protein (rCOP11) mRNA, complete cds
          Length = 1730

 Score =  145 bits (73), Expect = 1e-31
 Identities = 147/172 (85%)
 Strand = Plus / Plus

                                                                       
Query: 173 tcgaccaggcctggtccgacgccgtcgagcgccgcgccctgctgcgcaaggacaagcttg 232
           |||||||||||||| ||||  ||||| | |||||||||  || ||||||||| ||||| |
Sbjct: 361 tcgaccaggcctggaccgattccgtcaaccgccgcgccgagcagcgcaaggagaagctcg 420

                                                                       
Query: 233 acagcgagctcaatgtctacaggaccaatctgatcaaagagagcatccggatgggttaca 292
           | ||||||||||||| |||||||||||| || ||||||||||||||| | ||||||||||
Sbjct: 421 agagcgagctcaatggctacaggaccaaccttatcaaagagagcatcagaatgggttaca 480

                                                               
Query: 293 acgaccttggggacttccactatgctcagggccacctttnagaggccttcaa 344
           | ||| |||| || |||  ||||||||| |||||||||| ||| ||||||||
Sbjct: 481 atgacattggtgatttcttctatgctcatggccacctttcagatgccttcaa 532

>dbj|AK101870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070E21, full
           insert sequence
          Length = 1763

 Score =  145 bits (73), Expect = 1e-31
 Identities = 147/172 (85%)
 Strand = Plus / Plus

                                                                       
Query: 173 tcgaccaggcctggtccgacgccgtcgagcgccgcgccctgctgcgcaaggacaagcttg 232
           |||||||||||||| ||||  ||||| | |||||||||  || ||||||||| ||||| |
Sbjct: 412 tcgaccaggcctggaccgattccgtcaaccgccgcgccgagcagcgcaaggagaagctcg 471

                                                                       
Query: 233 acagcgagctcaatgtctacaggaccaatctgatcaaagagagcatccggatgggttaca 292
           | ||||||||||||| |||||||||||| || ||||||||||||||| | ||||||||||
Sbjct: 472 agagcgagctcaatggctacaggaccaaccttatcaaagagagcatcagaatgggttaca 531

                                                               
Query: 293 acgaccttggggacttccactatgctcagggccacctttnagaggccttcaa 344
           | ||| |||| || |||  ||||||||| |||||||||| ||| ||||||||
Sbjct: 532 atgacattggtgatttcttctatgctcatggccacctttcagatgccttcaa 583

>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0056G13, complete sequence
          Length = 148011

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                         
Query: 255   gaccaatctgatcaaagagagcatccggatgggttacaacgaccttggggacttccacta 314
             |||||| || ||||||||||||||| | ||||||||||| ||| |||| || |||  |||
Sbjct: 72791 gaccaaccttatcaaagagagcatcagaatgggttacaatgacattggtgatttcttcta 72732

                                           
Query: 315   tgctcagggccacctttnagaggccttcaa 344
             |||||| |||||||||| ||| ||||||||
Sbjct: 72731 tgctcatggccacctttcagatgccttcaa 72702



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                         
Query: 173   tcgaccaggcctggtccgacgccgtcgagcgccgcgccctgctgcgcaaggacaagcttg 232
             |||||||||||||| ||||  ||||| | |||||||||  || ||||||||| ||||| |
Sbjct: 73667 tcgaccaggcctggaccgattccgtcaaccgccgcgccgagcagcgcaaggagaagctcg 73608

                                    
Query: 233   acagcgagctcaatgtctacagg 255
             | ||||||||||||| |||||||
Sbjct: 73607 agagcgagctcaatggctacagg 73585

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                          
Query: 255    gaccaatctgatcaaagagagcatccggatgggttacaacgaccttggggacttccacta 314
              |||||| || ||||||||||||||| | ||||||||||| ||| |||| || |||  |||
Sbjct: 917594 gaccaaccttatcaaagagagcatcagaatgggttacaatgacattggtgatttcttcta 917535

                                            
Query: 315    tgctcagggccacctttnagaggccttcaa 344
              |||||| |||||||||| ||| ||||||||
Sbjct: 917534 tgctcatggccacctttcagatgccttcaa 917505



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                          
Query: 173    tcgaccaggcctggtccgacgccgtcgagcgccgcgccctgctgcgcaaggacaagcttg 232
              |||||||||||||| ||||  ||||| | |||||||||  || ||||||||| ||||| |
Sbjct: 918470 tcgaccaggcctggaccgattccgtcaaccgccgcgccgagcagcgcaaggagaagctcg 918411

                                     
Query: 233    acagcgagctcaatgtctacagg 255
              | ||||||||||||| |||||||
Sbjct: 918410 agagcgagctcaatggctacagg 918388

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 77/90 (85%)
 Strand = Plus / Minus

                                                                          
Query: 255    gaccaatctgatcaaagagagcatccggatgggttacaacgaccttggggacttccacta 314
              |||||| || ||||||||||||||| | ||||||||||| ||| |||| || |||  |||
Sbjct: 917592 gaccaaccttatcaaagagagcatcagaatgggttacaatgacattggtgatttcttcta 917533

                                            
Query: 315    tgctcagggccacctttnagaggccttcaa 344
              |||||| |||||||||| ||| ||||||||
Sbjct: 917532 tgctcatggccacctttcagatgccttcaa 917503



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                          
Query: 173    tcgaccaggcctggtccgacgccgtcgagcgccgcgccctgctgcgcaaggacaagcttg 232
              |||||||||||||| ||||  ||||| | |||||||||  || ||||||||| ||||| |
Sbjct: 918468 tcgaccaggcctggaccgattccgtcaaccgccgcgccgagcagcgcaaggagaagctcg 918409

                                     
Query: 233    acagcgagctcaatgtctacagg 255
              | ||||||||||||| |||||||
Sbjct: 918408 agagcgagctcaatggctacagg 918386

>gb|AF160800.1|AF160800 Oryza sativa subsp. indica constitutive photomorphogenic 11 (COP11)
            gene, complete cds
          Length = 6183

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 77/90 (85%)
 Strand = Plus / Plus

                                                                        
Query: 255  gaccaatctgatcaaagagagcatccggatgggttacaacgaccttggggacttccacta 314
            |||||| || ||||||||||||||| | ||||||||||| ||| |||| || |||  |||
Sbjct: 2846 gaccaaccttatcaaagagagcatcagaatgggttacaatgacattggtgatttcttcta 2905

                                          
Query: 315  tgctcagggccacctttnagaggccttcaa 344
            |||||| |||||||||| ||| ||||||||
Sbjct: 2906 tgctcatggccacctttcagatgccttcaa 2935



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                        
Query: 173  tcgaccaggcctggtccgacgccgtcgagcgccgcgccctgctgcgcaaggacaagcttg 232
            |||||||||||||| ||||  ||||| | |||||||||  || ||||||||| ||||| |
Sbjct: 1970 tcgaccaggcctggaccgattccgtcaaccgccgcgccgagcagcgcaaggagaagctcg 2029

                                   
Query: 233  acagcgagctcaatgtctacagg 255
            | ||||||||||||| |||||||
Sbjct: 2030 agagcgagctcaatggctacagg 2052

>gb|BT017931.1| Zea mays clone EL01N0520A01.c mRNA sequence
          Length = 1405

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 105/129 (81%)
 Strand = Plus / Plus

                                                                       
Query: 216 gcgcaaggacaagcttgacagcgagctcaatgtctacaggaccaatctgatcaaagagag 275
           ||||||||| ||||| || |||||||||||||  |||||||| ||  | |||||||||||
Sbjct: 254 gcgcaaggagaagctcgagagcgagctcaatggatacaggactaacttaatcaaagagag 313

                                                                       
Query: 276 catccggatgggttacaacgaccttggggacttccactatgctcagggccacctttnaga 335
           |||| | ||||| ||||| ||| |||| || |||  |||||| || ||||| |||| |||
Sbjct: 314 catcagaatgggctacaatgacattggtgatttcttctatgcccatggccaactttcaga 373

                    
Query: 336 ggccttcaa 344
            || |||||
Sbjct: 374 tgctttcaa 382

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 196     gtcgagcgccgcgccctgctg 216
               |||||||||||||||||||||
Sbjct: 1376519 gtcgagcgccgcgccctgctg 1376539

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 70      gcgctccggctggcctacgac 90
               |||||||||||||||||||||
Sbjct: 1899561 gcgctccggctggcctacgac 1899581



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    atcgccggccgcctcggctc 161
              ||||||||||||||||||||
Sbjct: 310991 atcgccggccgcctcggctc 311010

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 189     cgacgccgtcgagcgccgcgc 209
               |||||||||||||||||||||
Sbjct: 2808801 cgacgccgtcgagcgccgcgc 2808781

>gb|AC130474.12| Mus musculus chromosome 7, clone RP23-178C20, complete sequence
          Length = 232792

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   ccgcgccctgctgcgcaagga 224
             |||||||||||||||||||||
Sbjct: 34538 ccgcgccctgctgcgcaagga 34518

>gb|AC122767.16| Mus musculus chromosome 7, clone RP24-143L4, complete sequence
          Length = 192484

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 204  ccgcgccctgctgcgcaagga 224
            |||||||||||||||||||||
Sbjct: 3993 ccgcgccctgctgcgcaagga 4013

>gb|BT014631.1| Drosophila melanogaster SD09860 full insert cDNA
          Length = 3715

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   agcagatgcgtctggatgcgctcc 76
            ||||||||||||| ||||||||||
Sbjct: 2362 agcagatgcgtctcgatgcgctcc 2339

>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29
          Length = 292100

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    gcgccctgctgcgcaaggac 225
              ||||||||||||||||||||
Sbjct: 117290 gcgccctgctgcgcaaggac 117309

>ref|NM_133156.1| Drosophila melanogaster Nat1 CG12202-RA (Nat1), mRNA
          Length = 3844

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   agcagatgcgtctggatgcgctcc 76
            ||||||||||||| ||||||||||
Sbjct: 2514 agcagatgcgtctcgatgcgctcc 2491

>gb|AC011071.12|AC011071 Drosophila melanogaster, chromosome X, region 18C-18D, BAC clone
             BACR27L16, complete sequence
          Length = 182623

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    agcagatgcgtctggatgcgctcc 76
             ||||||||||||| ||||||||||
Sbjct: 85904 agcagatgcgtctcgatgcgctcc 85881

>gb|AC010847.11|AC010847 Drosophila melanogaster, chromosome X, region 18D-18D, BAC clone
             BACR10M08, complete sequence
          Length = 180213

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    agcagatgcgtctggatgcgctcc 76
             ||||||||||||| ||||||||||
Sbjct: 24384 agcagatgcgtctcgatgcgctcc 24361

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      gcgctccggctggcctacga 89
               ||||||||||||||||||||
Sbjct: 2462736 gcgctccggctggcctacga 2462717

>gb|BT024155.1| Zea mays clone EL01N0438A02 mRNA sequence
          Length = 1313

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 tcgagcgccgcgccctgctg 216
           ||||||||||||||||||||
Sbjct: 477 tcgagcgccgcgccctgctg 458

>gb|AE003512.3| Drosophila melanogaster chromosome X, section 64 of 74 of the complete
              sequence
          Length = 346474

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 53     agcagatgcgtctggatgcgctcc 76
              ||||||||||||| ||||||||||
Sbjct: 130150 agcagatgcgtctcgatgcgctcc 130127

>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940123D9, complete sequence
          Length = 121336

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 189   cgacgccgtcgagcgccgcgccct 212
             |||||||||||||| |||||||||
Sbjct: 41208 cgacgccgtcgagccccgcgccct 41231

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     agcgccgcgccctgctgcgc 219
               ||||||||||||||||||||
Sbjct: 2343651 agcgccgcgccctgctgcgc 2343632

>dbj|AB016932.1| Streptomyces coelicolor gene for protein serine/threonine kinase,
            complete cds
          Length = 2711

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  gcgccctgctgcgcaaggac 225
            ||||||||||||||||||||
Sbjct: 1482 gcgccctgctgcgcaaggac 1501


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,761,367
Number of Sequences: 3902068
Number of extensions: 1761367
Number of successful extensions: 34820
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34207
Number of HSP's gapped (non-prelim): 613
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)