Clone Information

BLAST Search Result

Clone Name	bags36c07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	133	8e-28
2	gb\|AC107224.2\| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	133	8e-28
4	dbj\|AK120128.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
5	ref\|NM_197653.1\| Oryza sativa (japonica cultivar-group) unknown ...	56	2e-04
6	gb\|AC020666.8\| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno...	56	2e-04
7	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	56	2e-04
8	dbj\|AK065729.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	56	2e-04
9	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	56	2e-04
10	ref\|NM_105044.2\| Arabidopsis thaliana unknown protein AT1G63670 ...	44	0.58
11	gb\|AC011622.6\|AC011622 Arabidopsis thaliana chromosome 1 BAC F24...	44	0.58
12	gb\|CP000153.1\| Thiomicrospira denitrificans ATCC 33889, complete...	42	2.3
13	gb\|AC163198.7\| Mus musculus 6 BAC RP23-174M4 (Roswell Park Cance...	42	2.3
14	emb\|BX005000.10\| Zebrafish DNA sequence from clone DKEY-25O16 in...	42	2.3
15	gb\|AF442728.1\| Uncultured bacterium clone CF4 dissimilatory sulf...	42	2.3
16	gb\|AE017131.1\| Yersinia pestis biovar Medievalis str. 91001 sect...	40	9.0
17	gb\|AC163093.5\| Mus musculus chromosome 18, clone RP23-144P22, co...	40	9.0
18	gb\|AC119842.9\| Mus musculus chromosome 1, clone RP23-277F23, com...	40	9.0
19	gb\|AC132835.7\| Mus musculus chromosome 1, clone RP24-490C20, com...	40	9.0
20	gb\|BC075239.1\| Xenopus laevis MGC84452 protein, mRNA (cDNA clone...	40	9.0
21	ref\|XM_363439.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	9.0
22	ref\|XM_599899.2\| PREDICTED: Bos taurus similar to leucyl/cystiny...	40	9.0
23	ref\|XM_710411.1\| Candida albicans SC5314 hypothetical protein (C...	40	9.0
24	ref\|XM_710341.1\| Candida albicans SC5314 hypothetical protein (C...	40	9.0
25	gb\|AE009952.1\| Yersinia pestis KIM, complete genome	40	9.0
26	gb\|AC116473.13\| Mus musculus chromosome 8, clone RP23-385E22, co...	40	9.0
27	emb\|BX927165.18\| Zebrafish DNA sequence from clone DKEYP-120H9 i...	40	9.0
28	emb\|CT010162.2\| Pan troglodytes chromosome X BAC RP43-009H04, co...	40	9.0
29	gb\|AC089999.20\| Homo sapiens 12 BAC RP11-545P7 (Roswell Park Can...	40	9.0
30	emb\|AL512271.10\| Human DNA sequence from clone RP11-74K19 on chr...	40	9.0
31	emb\|AL157829.24\| Human DNA sequence from clone RP11-305F14 on ch...	40	9.0
32	emb\|AL139826.15\| Human DNA sequence from clone RP11-60H7 on chro...	40	9.0
33	emb\|AL139278.12\| Human DNA sequence from clone RP4-639D23 on chr...	40	9.0
34	emb\|CR933822.8\| Zebrafish DNA sequence from clone DKEY-30F7 in l...	40	9.0
35	gb\|AC163098.4\| Mus musculus chromosome 19, clone RP23-262J17, co...	40	9.0
36	gb\|BT023762.1\| Drosophila melanogaster RE46882 full insert cDNA	40	9.0
37	emb\|BX936398.1\| Yersinia pseudotuberculosis IP32953 genome, comp...	40	9.0
38	emb\|AJ414153.1\| Yersinia pestis strain CO92 complete genome; seg...	40	9.0
39	gb\|AC105193.4\| Homo sapiens chromosome 8, clone RP11-379M16, com...	40	9.0
40	gb\|AC096506.5\| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cance...	40	9.0
41	gb\|AC090564.7\| Homo sapiens chromosome 8, clone RP11-368C9, comp...	40	9.0
42	gb\|AC026827.6\| Homo sapiens chromosome 8, clone RP11-678C14, com...	40	9.0
43	gb\|AC155824.3\| Mus musculus BAC clone RP23-136L1 from chromosome...	40	9.0
44	gb\|AC009904.7\| Drosophila melanogaster, chromosome 3R, region 88...	40	9.0
45	gb\|AC020732.4\|AC020732 Homo sapiens BAC clone RP11-556H16 from X...	40	9.0
46	gb\|AC009457.8\|AC009457 Drosophila melanogaster, chromosome 3R, r...	40	9.0
47	gb\|AF208730.1\|AF208729S2 Mus musculus peroxiredoxin V (PrxV) gen...	40	9.0
48	emb\|AL449983.2\|HS183I6 Homo sapiens chromosome 9 BAC RP11-183I6,...	40	9.0
49	emb\|BX321890.5\| Zebrafish DNA sequence from clone CH211-258D5 in...	40	9.0
50	emb\|BX957279.13\| Zebrafish DNA sequence from clone DKEY-218N20 i...	40	9.0
51	gb\|AE003707.2\| Drosophila melanogaster chromosome 3R, section 45...	40	9.0
52	gb\|AC120557.12\| Mus musculus chromosome 19, clone RP24-493E6, co...	40	9.0
53	dbj\|AP004289.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.0
54	dbj\|AP004286.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.0

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  133 bits (67), Expect = 8e-28
 Identities = 203/248 (81%), Gaps = 3/248 (1%)
 Strand = Plus / Minus

                                                                          
Query: 404    tgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaagatg 463
              ||||||||||||||||| |||||||||||||  |  |||| || |||||||| |||||||
Sbjct: 341005 tgctggagctatcagaactatgcacataccaaaatctagaggtgtggtatctagaagatg 340946

                                                                          
Query: 464    aattgatcaacccttgcctgtttgaagaactacatcagggaaatcatcaaacagatgatc 523
              ||||||||| ||||||| || ||||||||||||| || || |   |||||||||||||||
Sbjct: 340945 aattgatcagcccttgcatgattgaagaactacaccaaggca---atcaaacagatgatc 340889

                                                                          
Query: 524    tgaagctcttctttgactgcatctgtgaagctatagcagcagtacaggagaaacactttg 583
              | ||||||   ||||| || ||||||||||||||| ||  | | ||||||| | | ||| 
Sbjct: 340888 taaagctcccttttgattgtatctgtgaagctataacaataatccaggagacatatttta 340829

                                                                          
Query: 584    gaaacccccattgcttatcttttgtcagacaaaacatacaggcgcctncagtgggacaga 643
              ||||||| | ||||||||||||| |||  || || |||||| | ||| || ||||| |||
Sbjct: 340828 gaaaccctccttgcttatcttttctcatgcacaagatacagccacctccaatgggagaga 340769

                      
Query: 644    gcctcatc 651
               |||||||
Sbjct: 340768 acctcatc 340761



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                       
Query: 198    aaagcaggagcaacccagtcctgtgtctgttcttgatccattattccatgaagatgt 254
              |||||| ||||||||||| ||||| ||||| ||||||||||| |||  |||||||||
Sbjct: 341304 aaagcaagagcaacccagccctgtatctgtccttgatccattcttctgtgaagatgt 341248

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>gb|AC107224.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0009C08, complete sequence
          Length = 137033

 Score =  133 bits (67), Expect = 8e-28
 Identities = 203/248 (81%), Gaps = 3/248 (1%)
 Strand = Plus / Minus

                                                                         
Query: 404   tgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaagatg 463
             ||||||||||||||||| |||||||||||||  |  |||| || |||||||| |||||||
Sbjct: 68533 tgctggagctatcagaactatgcacataccaaaatctagaggtgtggtatctagaagatg 68474

                                                                         
Query: 464   aattgatcaacccttgcctgtttgaagaactacatcagggaaatcatcaaacagatgatc 523
             ||||||||| ||||||| || ||||||||||||| || || |   |||||||||||||||
Sbjct: 68473 aattgatcagcccttgcatgattgaagaactacaccaaggca---atcaaacagatgatc 68417

                                                                         
Query: 524   tgaagctcttctttgactgcatctgtgaagctatagcagcagtacaggagaaacactttg 583
             | ||||||   ||||| || ||||||||||||||| ||  | | ||||||| | | ||| 
Sbjct: 68416 taaagctcccttttgattgtatctgtgaagctataacaataatccaggagacatatttta 68357

                                                                         
Query: 584   gaaacccccattgcttatcttttgtcagacaaaacatacaggcgcctncagtgggacaga 643
             ||||||| | ||||||||||||| |||  || || |||||| | ||| || ||||| |||
Sbjct: 68356 gaaaccctccttgcttatcttttctcatgcacaagatacagccacctccaatgggagaga 68297

                     
Query: 644   gcctcatc 651
              |||||||
Sbjct: 68296 acctcatc 68289



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                      
Query: 198   aaagcaggagcaacccagtcctgtgtctgttcttgatccattattccatgaagatgt 254
             |||||| ||||||||||| ||||| ||||| ||||||||||| |||  |||||||||
Sbjct: 68832 aaagcaagagcaacccagccctgtatctgtccttgatccattcttctgtgaagatgt 68776

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  133 bits (67), Expect = 8e-28
 Identities = 203/248 (81%), Gaps = 3/248 (1%)
 Strand = Plus / Minus

                                                                          
Query: 404    tgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaagatg 463
              ||||||||||||||||| |||||||||||||  |  |||| || |||||||| |||||||
Sbjct: 341003 tgctggagctatcagaactatgcacataccaaaatctagaggtgtggtatctagaagatg 340944

                                                                          
Query: 464    aattgatcaacccttgcctgtttgaagaactacatcagggaaatcatcaaacagatgatc 523
              ||||||||| ||||||| || ||||||||||||| || || |   |||||||||||||||
Sbjct: 340943 aattgatcagcccttgcatgattgaagaactacaccaaggca---atcaaacagatgatc 340887

                                                                          
Query: 524    tgaagctcttctttgactgcatctgtgaagctatagcagcagtacaggagaaacactttg 583
              | ||||||   ||||| || ||||||||||||||| ||  | | ||||||| | | ||| 
Sbjct: 340886 taaagctcccttttgattgtatctgtgaagctataacaataatccaggagacatatttta 340827

                                                                          
Query: 584    gaaacccccattgcttatcttttgtcagacaaaacatacaggcgcctncagtgggacaga 643
              ||||||| | ||||||||||||| |||  || || |||||| | ||| || ||||| |||
Sbjct: 340826 gaaaccctccttgcttatcttttctcatgcacaagatacagccacctccaatgggagaga 340767

                      
Query: 644    gcctcatc 651
               |||||||
Sbjct: 340766 acctcatc 340759



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                       
Query: 198    aaagcaggagcaacccagtcctgtgtctgttcttgatccattattccatgaagatgt 254
              |||||| ||||||||||| ||||| ||||| ||||||||||| |||  |||||||||
Sbjct: 341302 aaagcaagagcaacccagccctgtatctgtccttgatccattcttctgtgaagatgt 341246

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>dbj|AK120128.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026G14, full
            insert sequence
          Length = 3541

 Score =  133 bits (67), Expect = 8e-28
 Identities = 203/248 (81%), Gaps = 3/248 (1%)
 Strand = Plus / Plus

                                                                        
Query: 404  tgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaagatg 463
            ||||||||||||||||| |||||||||||||  |  |||| || |||||||| |||||||
Sbjct: 2586 tgctggagctatcagaactatgcacataccaaaatctagaggtgtggtatctagaagatg 2645

                                                                        
Query: 464  aattgatcaacccttgcctgtttgaagaactacatcagggaaatcatcaaacagatgatc 523
            ||||||||| ||||||| || ||||||||||||| || || |   |||||||||||||||
Sbjct: 2646 aattgatcagcccttgcatgattgaagaactacaccaaggca---atcaaacagatgatc 2702

                                                                        
Query: 524  tgaagctcttctttgactgcatctgtgaagctatagcagcagtacaggagaaacactttg 583
            | ||||||   ||||| || ||||||||||||||| ||  | | ||||||| | | ||| 
Sbjct: 2703 taaagctcccttttgattgtatctgtgaagctataacaataatccaggagacatatttta 2762

                                                                        
Query: 584  gaaacccccattgcttatcttttgtcagacaaaacatacaggcgcctncagtgggacaga 643
            ||||||| | ||||||||||||| |||  || || |||||| | ||| || ||||| |||
Sbjct: 2763 gaaaccctccttgcttatcttttctcatgcacaagatacagccacctccaatgggagaga 2822

                    
Query: 644  gcctcatc 651
             |||||||
Sbjct: 2823 acctcatc 2830



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                     
Query: 198  aaagcaggagcaacccagtcctgtgtctgttcttgatccattattccatgaagatgt 254
            |||||| ||||||||||| ||||| ||||| ||||||||||| |||  |||||||||
Sbjct: 2392 aaagcaagagcaacccagccctgtatctgtccttgatccattcttctgtgaagatgt 2448

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>ref|NM_197653.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0082M15.1), mRNA
          Length = 3576

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Plus

                                                                        
Query: 402  ggtgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaaga 461
            |||||| ||||| |||||||||||  || | ||  | ||||| || |||||||| || ||
Sbjct: 2650 ggtgctagagctctcagaattatgtgcagagcaaaatttagaggtgtggtatctagagga 2709

                                                
Query: 462  tgaattgatcaacccttgcctgtttgaagaactaca 497
            |||||| |||| ||||||| |||| |||||||||||
Sbjct: 2710 tgaattaatcagcccttgcatgttcgaagaactaca 2745

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>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
             sequence
          Length = 158550

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                         
Query: 402   ggtgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaaga 461
             |||||| ||||| |||||||||||  || | ||  | ||||| || |||||||| || ||
Sbjct: 21125 ggtgctagagctctcagaattatgtgcagagcaaaatttagaggtgtggtatctagagga 21066

                                                 
Query: 462   tgaattgatcaacccttgcctgtttgaagaactaca 497
             |||||| |||| ||||||| |||| |||||||||||
Sbjct: 21065 tgaattaatcagcccttgcatgttcgaagaactaca 21030

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Plus

                                                                            
Query: 402      ggtgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaaga 461
                |||||| ||||| |||||||||||  || | ||  | ||||| || |||||||| || ||
Sbjct: 21043266 ggtgctagagctctcagaattatgtgcagagcaaaatttagaggtgtggtatctagagga 21043325

                                                    
Query: 462      tgaattgatcaacccttgcctgtttgaagaactaca 497
                |||||| |||| ||||||| |||| |||||||||||
Sbjct: 21043326 tgaattaatcagcccttgcatgttcgaagaactaca 21043361

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>dbj|AK065729.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035P21, full
            insert sequence
          Length = 3674

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Plus

                                                                        
Query: 402  ggtgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaaga 461
            |||||| ||||| |||||||||||  || | ||  | ||||| || |||||||| || ||
Sbjct: 2731 ggtgctagagctctcagaattatgtgcagagcaaaatttagaggtgtggtatctagagga 2790

                                                
Query: 462  tgaattgatcaacccttgcctgtttgaagaactaca 497
            |||||| |||| ||||||| |||| |||||||||||
Sbjct: 2791 tgaattaatcagcccttgcatgttcgaagaactaca 2826

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Plus

                                                                            
Query: 402      ggtgctggagctatcagaattatgcacataccaggacttagatgtatggtatctggaaga 461
                |||||| ||||| |||||||||||  || | ||  | ||||| || |||||||| || ||
Sbjct: 21054530 ggtgctagagctctcagaattatgtgcagagcaaaatttagaggtgtggtatctagagga 21054589

                                                    
Query: 462      tgaattgatcaacccttgcctgtttgaagaactaca 497
                |||||| |||| ||||||| |||| |||||||||||
Sbjct: 21054590 tgaattaatcagcccttgcatgttcgaagaactaca 21054625

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>ref|NM_105044.2| Arabidopsis thaliana unknown protein AT1G63670 mRNA, complete cds
          Length = 2175

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 200  agcaggagcaacccagtcctgtgtctgttcttga 233
            ||||||| ||||| |||||||| |||||||||||
Sbjct: 1424 agcaggaacaaccgagtcctgtctctgttcttga 1457

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>gb|AC011622.6|AC011622 Arabidopsis thaliana chromosome 1 BAC F24D7 genomic sequence, complete
             sequence
          Length = 87575

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 200   agcaggagcaacccagtcctgtgtctgttcttga 233
             ||||||| ||||| |||||||| |||||||||||
Sbjct: 60522 agcaggaacaaccgagtcctgtctctgttcttga 60555

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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 601     tcttttgtcagacaaaacata 621
               |||||||||||||||||||||
Sbjct: 2182538 tcttttgtcagacaaaacata 2182518

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>gb|AC163198.7| Mus musculus 6 BAC RP23-174M4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 188300

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 9      atgtatcccaacagagcaagacaga 33
              |||| ||||||||||||||||||||
Sbjct: 107753 atgtgtcccaacagagcaagacaga 107777

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>emb|BX005000.10| Zebrafish DNA sequence from clone DKEY-25O16 in linkage group 1, complete
              sequence
          Length = 234373

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 317    accagtactaccaagacgatg 337
              |||||||||||||||||||||
Sbjct: 141212 accagtactaccaagacgatg 141232

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>gb|AF442728.1| Uncultured bacterium clone CF4 dissimilatory sulfite reductase
           alpha subunit (dsrA) gene, partial cds
          Length = 360

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 349 ctggaagagatcttctgggag 369
           |||||||||||||||||||||
Sbjct: 217 ctggaagagatcttctgggag 237

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>gb|AE017131.1| Yersinia pestis biovar Medievalis str. 91001 section 5 of 16 of the
             complete genome
          Length = 291847

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 498   tcagggaaatcatcaaacag 517
             ||||||||||||||||||||
Sbjct: 22772 tcagggaaatcatcaaacag 22753

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>gb|AC163093.5| Mus musculus chromosome 18, clone RP23-144P22, complete sequence
          Length = 195116

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    atcttctgggaggacaggga 377
              ||||||||||||||||||||
Sbjct: 178110 atcttctgggaggacaggga 178091

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>gb|AC119842.9| Mus musculus chromosome 1, clone RP23-277F23, complete sequence
          Length = 175179

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  gaggacagggatgtcaggtt 386
            ||||||||||||||||||||
Sbjct: 6230 gaggacagggatgtcaggtt 6211

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>gb|AC132835.7| Mus musculus chromosome 1, clone RP24-490C20, complete sequence
          Length = 148948

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   gaggacagggatgtcaggtt 386
             ||||||||||||||||||||
Sbjct: 48397 gaggacagggatgtcaggtt 48416

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>gb|BC075239.1| Xenopus laevis MGC84452 protein, mRNA (cDNA clone MGC:84452
           IMAGE:7019936), complete cds
          Length = 2192

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 tagatgagcgagagccagaa 147
           ||||||||||||||||||||
Sbjct: 746 tagatgagcgagagccagaa 765

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>ref|XM_363439.1| Magnaporthe grisea 70-15 hypothetical protein (MG01365.4) partial
           mRNA
          Length = 1713

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gacctggaagagatcttctg 365
           ||||||||||||||||||||
Sbjct: 717 gacctggaagagatcttctg 698

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>ref|XM_599899.2| PREDICTED: Bos taurus similar to leucyl/cystinyl aminopeptidase
            isoform 1 (LOC521633), mRNA
          Length = 3150

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  ctgaagctcttctttgactg 542
            ||||||||||||||||||||
Sbjct: 2590 ctgaagctcttctttgactg 2609

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>ref|XM_710411.1| Candida albicans SC5314 hypothetical protein (CaO19_10637), mRNA
          Length = 777

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 454 ctggaagatgaattgatcaa 473
           ||||||||||||||||||||
Sbjct: 145 ctggaagatgaattgatcaa 164

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>ref|XM_710341.1| Candida albicans SC5314 hypothetical protein (CaO19_3125), mRNA
          Length = 777

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 454 ctggaagatgaattgatcaa 473
           ||||||||||||||||||||
Sbjct: 145 ctggaagatgaattgatcaa 164

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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 498     tcagggaaatcatcaaacag 517
               ||||||||||||||||||||
Sbjct: 1331217 tcagggaaatcatcaaacag 1331236

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>gb|AC116473.13| Mus musculus chromosome 8, clone RP23-385E22, complete sequence
          Length = 186155

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   gcccccctaagaattctctt 120
             ||||||||||||||||||||
Sbjct: 96507 gcccccctaagaattctctt 96526

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>emb|BX927165.18| Zebrafish DNA sequence from clone DKEYP-120H9 in linkage group 19,
              complete sequence
          Length = 137449

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 577    cactttggaaacccccattgctta 600
              ||||||| ||||||||||||||||
Sbjct: 135959 cactttgaaaacccccattgctta 135936

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>emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, complete sequence
          Length = 195301

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 223   tctgttcttgatccattattccat 246
             ||||||||||||| ||||||||||
Sbjct: 18874 tctgttcttgatcaattattccat 18897

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>gb|AC089999.20| Homo sapiens 12 BAC RP11-545P7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 199522

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   gagcaacccagtcctgtgtc 224
             ||||||||||||||||||||
Sbjct: 21976 gagcaacccagtcctgtgtc 21957

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>emb|AL512271.10| Human DNA sequence from clone RP11-74K19 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 132920

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 605    ttgtcagacaaaacatacag 624
              ||||||||||||||||||||
Sbjct: 124347 ttgtcagacaaaacatacag 124366

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>emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on chromosome 9 Contains part
             of the ASTN2 gene for astrotactin2 (KIAA0634), and a CpG
             island, complete sequence
          Length = 162575

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   gactgcatctgtgaagctat 557
             ||||||||||||||||||||
Sbjct: 35646 gactgcatctgtgaagctat 35665

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>emb|AL139826.15| Human DNA sequence from clone RP11-60H7 on chromosome 20 Contains the
             3' end of the SPAG4L gene for sperm associated antigen
             4-like, complete sequence
          Length = 80419

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 563   cagtacaggagaaacacttt 582
             ||||||||||||||||||||
Sbjct: 35624 cagtacaggagaaacacttt 35605

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>emb|AL139278.12| Human DNA sequence from clone RP4-639D23 on chromosome Xp21.1-21.3
             Contains part of the DMD gene for dystrophin (muscular
             dystrophy, Duchenne and Becker types), complete sequence
          Length = 95866

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   tctgttcttgatccattattccat 246
             ||||||||||||| ||||||||||
Sbjct: 57897 tctgttcttgatcaattattccat 57874

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>emb|CR933822.8| Zebrafish DNA sequence from clone DKEY-30F7 in linkage group 19, complete
              sequence
          Length = 187377

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 577    cactttggaaacccccattgctta 600
              ||||||| ||||||||||||||||
Sbjct: 118584 cactttgaaaacccccattgctta 118561

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>gb|AC163098.4| Mus musculus chromosome 19, clone RP23-262J17, complete sequence
          Length = 170948

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 568    caggagaaacactttggaaa 587
              ||||||||||||||||||||
Sbjct: 147837 caggagaaacactttggaaa 147818

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>gb|BT023762.1| Drosophila melanogaster RE46882 full insert cDNA
          Length = 3214

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  gaacaagtgaactatataaa 200
            ||||||||||||||||||||
Sbjct: 2242 gaacaagtgaactatataaa 2223

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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 498     tcagggaaatcatcaaacag 517
               ||||||||||||||||||||
Sbjct: 1324015 tcagggaaatcatcaaacag 1324034

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>emb|AJ414153.1| Yersinia pestis strain CO92 complete genome; segment 13/20
          Length = 258050

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   tcagggaaatcatcaaacag 517
             ||||||||||||||||||||
Sbjct: 22085 tcagggaaatcatcaaacag 22104

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>gb|AC105193.4| Homo sapiens chromosome 8, clone RP11-379M16, complete sequence
          Length = 171256

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 599   tatcttttgtcagacaaaac 618
             ||||||||||||||||||||
Sbjct: 40226 tatcttttgtcagacaaaac 40207

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>gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 120135

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 223    tctgttcttgatccattattccat 246
              ||||||||||||| ||||||||||
Sbjct: 101425 tctgttcttgatcaattattccat 101402

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>gb|AC090564.7| Homo sapiens chromosome 8, clone RP11-368C9, complete sequence
          Length = 111851

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 599   tatcttttgtcagacaaaac 618
             ||||||||||||||||||||
Sbjct: 76930 tatcttttgtcagacaaaac 76949

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>gb|AC026827.6| Homo sapiens chromosome 8, clone RP11-678C14, complete sequence
          Length = 186183

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 599   tatcttttgtcagacaaaac 618
             ||||||||||||||||||||
Sbjct: 20567 tatcttttgtcagacaaaac 20586

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>gb|AC155824.3| Mus musculus BAC clone RP23-136L1 from chromosome 8, complete sequence
          Length = 220437

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gcccccctaagaattctctt 120
             ||||||||||||||||||||
Sbjct: 22771 gcccccctaagaattctctt 22752

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>gb|AC009904.7| Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
             BACR32A03, complete sequence
          Length = 182601

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   gaacaagtgaactatataaa 200
             ||||||||||||||||||||
Sbjct: 20289 gaacaagtgaactatataaa 20308

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>gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X, complete sequence
          Length = 181559

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 223   tctgttcttgatccattattccat 246
             ||||||||||||| ||||||||||
Sbjct: 99425 tctgttcttgatcaattattccat 99402

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>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
              BACR25A06, complete sequence
          Length = 170163

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    gaacaagtgaactatataaa 200
              ||||||||||||||||||||
Sbjct: 136138 gaacaagtgaactatataaa 136157

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>gb|AF208730.1|AF208729S2 Mus musculus peroxiredoxin V (PrxV) gene, exons 2 through 6 and
           complete cds
          Length = 2360

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 568 caggagaaacactttggaaa 587
           ||||||||||||||||||||
Sbjct: 108 caggagaaacactttggaaa 89

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>emb|AL449983.2|HS183I6 Homo sapiens chromosome 9 BAC RP11-183I6, complete sequence
          Length = 198729

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 517   gatgatctgaagctcttctt 536
             ||||||||||||||||||||
Sbjct: 54267 gatgatctgaagctcttctt 54286

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>emb|BX321890.5| Zebrafish DNA sequence from clone CH211-258D5 in linkage group 5,
              complete sequence
          Length = 147231

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 138    agagccagaaactcccagaccaac 161
              |||||||||||| |||||||||||
Sbjct: 119497 agagccagaaacacccagaccaac 119474

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>emb|BX957279.13| Zebrafish DNA sequence from clone DKEY-218N20 in linkage group 19,
           complete sequence
          Length = 198752

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 577 cactttggaaacccccattgctta 600
           ||||||| ||||||||||||||||
Sbjct: 510 cactttgaaaacccccattgctta 487

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>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the complete
              sequence
          Length = 228284

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    gaacaagtgaactatataaa 200
              ||||||||||||||||||||
Sbjct: 141979 gaacaagtgaactatataaa 141998

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>gb|AC120557.12| Mus musculus chromosome 19, clone RP24-493E6, complete sequence
          Length = 169131

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   caggagaaacactttggaaa 587
             ||||||||||||||||||||
Sbjct: 90502 caggagaaacactttggaaa 90483

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>dbj|AP004289.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1844F2
          Length = 151991

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 599    tatcttttgtcagacaaaac 618
              ||||||||||||||||||||
Sbjct: 147429 tatcttttgtcagacaaaac 147448

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>dbj|AP004286.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1425B2, complete
             sequence
          Length = 175274

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 599   tatcttttgtcagacaaaac 618
             ||||||||||||||||||||
Sbjct: 52254 tatcttttgtcagacaaaac 52273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,355,571
Number of Sequences: 3902068
Number of extensions: 6355571
Number of successful extensions: 171589
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 171281
Number of HSP's gapped (non-prelim): 299
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result