>ARR12_ARATH (P62598) Two-component response regulator ARR12|
          Length = 596

 Score =  117 bits (292), Expect = 2e-26
 Identities = 60/93 (64%), Positives = 72/93 (77%)
 Frame = +1

Query: 205 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKR 384
           QKK RVVW+VELH+KFVAAVNQLG +KA+PKKILDLMNVE +TRENVASHLQK+RLYLKR
Sbjct: 193 QKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKR 252

Query: 385 MSMDASRQANLVAALGGRNPAYSNMNSMDVFRH 483
           +S  A++Q    A +      +  MN +D F H
Sbjct: 253 ISGVANQQ----AIMANSELHFMQMNGLDGFHH 281

>ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18|
          Length = 635

 Score =  115 bits (289), Expect = 5e-26
 Identities = 59/95 (62%), Positives = 74/95 (77%), Gaps = 1/95 (1%)
 Frame = +1

Query: 205 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKR 384
           +KKPRVVWS ELH+KFV+AV QLG+DKAVPKKILDLM++E +TRENVASHLQKYRLYLK+
Sbjct: 192 RKKPRVVWSQELHQKFVSAVQQLGLDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLKK 251

Query: 385 MSMDASRQANLVA-ALGGRNPAYSNMNSMDVFRHY 486
             +D  +Q N+   A G R+ +Y  M  +D  R +
Sbjct: 252 --IDEGQQQNMTPDAFGTRDSSYFQMAQLDGLRDF 284

>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Receiver-like|
           protein 5)
          Length = 664

 Score =  112 bits (281), Expect = 4e-25
 Identities = 54/91 (59%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKRM 387
           KKPRVVWSVELH++FVAAVNQLG+DKAVPKKIL++MNV  +TRENVASHLQKYR+YL+R+
Sbjct: 215 KKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRL 274

Query: 388 SMDASRQANL-VAALGGRNPAYSNMNSMDVF 477
              +  Q N+  + + G++ ++  ++S++ F
Sbjct: 275 GGVSQHQGNMNHSFMTGQDQSFGPLSSLNGF 305

>ARR1_ARATH (Q940D0) Two-component response regulator ARR1|
          Length = 690

 Score =  111 bits (278), Expect = 9e-25
 Identities = 54/91 (59%), Positives = 75/91 (82%), Gaps = 1/91 (1%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKRM 387
           KKPRVVWSVELH++FVAAVNQLG++KAVPKKIL+LMNV  +TRENVASHLQKYR+YL+R+
Sbjct: 236 KKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRL 295

Query: 388 SMDASRQANL-VAALGGRNPAYSNMNSMDVF 477
              +  Q NL  + + G++ ++  +++++ F
Sbjct: 296 GGVSQHQGNLNNSFMTGQDASFGPLSTLNGF 326

>ARR10_ARATH (O49397) Two-component response regulator ARR10 (Receiver-like|
           protein 4)
          Length = 552

 Score =  105 bits (263), Expect = 5e-23
 Identities = 50/73 (68%), Positives = 64/73 (87%)
 Frame = +1

Query: 205 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKR 384
           QKKPRV+W+ ELH KF+AAV+ LG+++AVPKKILDLMNV+ +TRENVASHLQK+R+ LK+
Sbjct: 181 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 240

Query: 385 MSMDASRQANLVA 423
           +S DA +QAN  A
Sbjct: 241 VSDDAIQQANRAA 253

>ARR14_ARATH (Q8L9Y3) Two-component response regulator ARR14|
          Length = 382

 Score =  103 bits (257), Expect = 2e-22
 Identities = 49/66 (74%), Positives = 61/66 (92%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKRM 387
           KK RVVWS+ELH++FV AVN+LGIDKAVPK+IL+LMNV  ++RENVASHLQK+RLYLKR+
Sbjct: 199 KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258

Query: 388 SMDASR 405
           S +AS+
Sbjct: 259 SGEASQ 264

>ARR11_ARATH (Q9FXD6) Two-component response regulator ARR11 (Receiver-like|
           protein 3)
          Length = 521

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 55/94 (58%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLGID-KAVPKKILDLMNVENITRENVASHLQKYRLYLKR 384
           KK RVVWS ELH KFV AVNQ+G D KA PKKILDLMNV  +TRENVASHLQKYRLYL R
Sbjct: 192 KKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLYLSR 251

Query: 385 MSMDASRQANLVAALGGRNPAYSNMNSMDVFRHY 486
           +     +   L    GG   A S+   ++V   Y
Sbjct: 252 L----EKGKELKCYSGGVKNADSSPKDVEVNSGY 281

>ARR21_ARATH (Q9LYP5) Putative two-component response regulator ARR21|
          Length = 592

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 34/61 (55%), Positives = 48/61 (78%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKRM 387
           KK ++ W+  LH  F+ A+  +G+DKAVPKKIL  M+V  +TRENVASHLQKYR++L+R+
Sbjct: 221 KKKKIQWTDSLHDLFLQAIRHIGLDKAVPKKILAFMSVPYLTRENVASHLQKYRIFLRRV 280

Query: 388 S 390
           +
Sbjct: 281 A 281

>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2|
           (Pseudo-response regulator 2) (TOC2 protein)
          Length = 535

 Score = 75.1 bits (183), Expect = 9e-14
 Identities = 36/84 (42%), Positives = 51/84 (60%)
 Frame = +1

Query: 211 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKRMS 390
           + +V W+ ELH+KFV AV QLG+D+A+P +IL+LM V  +TR NVASHLQK+R + K + 
Sbjct: 296 RKKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNIL 355

Query: 391 MDASRQANLVAALGGRNPAYSNMN 462
                    + +     P   N N
Sbjct: 356 PKDDHNHRWIQSRENHRPNQRNYN 379

>ARR13_ARATH (Q9ZVD3) Putative two-component response regulator ARR13|
          Length = 572

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 34/60 (56%), Positives = 45/60 (75%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKRM 387
           KK ++ W+  L   F+ A+  +G DK VPKKIL +MNV  +TRENVASHLQKYRL++KR+
Sbjct: 224 KKKKIWWTNPLQDLFLQAIQHIGYDKVVPKKILAIMNVPYLTRENVASHLQKYRLFVKRV 283

>APRR4_ARATH (Q9FJ16) Putative two-component response regulator-like APRR4|
           (Pseudo-response regulator 4)
          Length = 292

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 34/51 (66%), Positives = 43/51 (84%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQ 360
           KK RVVW  ELH+ F+ AV+ LG+++AVPKKILD+M V+ I+RENVASHLQ
Sbjct: 222 KKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENVASHLQ 272

>ARR20_ARATH (Q9LZJ8) Putative two-component response regulator ARR20|
          Length = 426

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDLM----NVENITRENVASHLQKYRL 372
           KKPR+ W+ ELH KF  AV ++G ++KA PK IL  M    NV+ +TR NVASHLQKYR 
Sbjct: 210 KKPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYRQ 269

Query: 373 YLKRMSMDASRQANLV 420
             K+       Q + V
Sbjct: 270 SSKKTCTPQEPQEDFV 285

>ARR19_ARATH (Q9M9B9) Putative two-component response regulator ARR19|
          Length = 407

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
 Frame = +1

Query: 208 KKPRVVWSVELHRKFVAAVNQLG-IDKAVPKKILDL---MNVENITRENVASHLQKYRLY 375
           +KPR+ W+ ELH+KF+ A+  +G I+KA PK +++    M +E ITR NVASHLQK+R+ 
Sbjct: 214 RKPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKHRIN 273

Query: 376 LKRMSMDASRQAN 414
           L+   +    Q N
Sbjct: 274 LEENQIPQQTQGN 286

>MYBF_ARATH (Q700D9) Putative Myb family transcription factor At1g14600|
          Length = 255

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = +1

Query: 214 PRVVWSVELHRKFVAAVNQLGID-KAVPKKILDLMNVENITRENVASHLQKYR 369
           PR+ W+ ELHR FV AV+ LG   KA PK +L +M+V+ +T  +V SHLQ YR
Sbjct: 24  PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

>YDB4_SCHPO (Q10357) Hypothetical protein C22E12.04 in chromosome I|
          Length = 297

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 288 CSKEDIGPHERRE---HHQGECC*SSAEVPAVSEKDEYGCKQTG*PSCCTWRKESC 446
           CSK+D  P E+       +  CC  S++ P+   +++ GC  T   SCC+  K+SC
Sbjct: 226 CSKKDSSPSEKPSCCSQEKKSCC--SSKKPSCCSQEKKGCCSTEKTSCCSQEKKSC 279

>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein|
           5.4) (Ultrahigh sulfur keratin-associated protein 5.4)
          Length = 288

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 25/80 (31%), Positives = 29/80 (36%)
 Frame = +3

Query: 219 GCVVCGAAPEVCSCCQPAWH*QGCSKEDIGPHERREHHQGECC*SSAEVPAVSEKDEYGC 398
           GC  CG +   CSCC+P     GC                 CC SS   P  S     GC
Sbjct: 190 GCGSCGCSQ--CSCCKPCCCSSGCG--------------SSCCQSSCCKPCCSSS---GC 230

Query: 399 KQTG*PSCCTWRKESCLQQY 458
                 SCC   + SC + Y
Sbjct: 231 GS----SCC---QSSCCKPY 243

>ZITB_YERPS (Q66D85) Zinc transporter zitB|
          Length = 312

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = -3

Query: 274 QAG*QQLQTSGAAPQTTQPLASSGMTSRRCHYCSHQNRXXXXXXXL-YPSVTASCCG*RH 98
           Q G Q+L T  A  Q   PL    +  R   Y  H  R       + Y       CG   
Sbjct: 241 QVGEQRLMTLHA--QVIPPLDHDALLQRIQDYLLHHYRISHATVQMEYQHCGTPDCG--- 295

Query: 97  HSHLQHSAPSDWHHRCHYH 41
              +  +AP+D HHR H+H
Sbjct: 296 ---INQAAPADGHHRHHHH 311

>ZITB_YERPE (Q8ZGY6) Zinc transporter zitB|
          Length = 312

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = -3

Query: 274 QAG*QQLQTSGAAPQTTQPLASSGMTSRRCHYCSHQNRXXXXXXXL-YPSVTASCCG*RH 98
           Q G Q+L T  A  Q   PL    +  R   Y  H  R       + Y       CG   
Sbjct: 241 QVGEQRLMTLHA--QVIPPLDHDALLQRIQDYLLHHYRISHATVQMEYQHCGTPDCG--- 295

Query: 97  HSHLQHSAPSDWHHRCHYH 41
              +  +AP+D HHR H+H
Sbjct: 296 ---INQAAPADGHHRHHHH 311

>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)|
          Length = 657

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 100 HHSHLQHSAPSDWHHRCHYH 41
           HH H QH AP    H+ H+H
Sbjct: 69  HHHHHQHQAPHQAPHQAHHH 88

>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated|
           protein 10.6) (High sulfur keratin-associated protein
           10.6) (Keratin-associated protein 18-6)
           (Keratin-associated protein 18.6)
          Length = 365

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
 Frame = +3

Query: 210 EAKGCVVCGAAPEVCSCCQPAWH*QGCSKEDIGPHERREHHQGECC*SS----------- 356
           +   CV C ++P   + C+P+    GC+        ++   Q  CC SS           
Sbjct: 174 QQSSCVSCVSSPCCQAVCEPSPCQSGCTSSCTPSCCQQSSCQPTCCTSSPCQQACCVPVC 233

Query: 357 ----AEVPAVSEKDEYGCKQTG-*PSCCT 428
                 VP  SE     C+Q+   P+CCT
Sbjct: 234 CVPVCCVPTCSEDSSSCCQQSSCQPACCT 262

>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +3

Query: 219 GCVVCGAAPEVCSCCQPAWH*QGCSKEDIGPHERREHHQGECC*SSAEVPAVSE 380
           GC  CG +   CSCC+P +   GC                 CC SS   P  S+
Sbjct: 79  GCGSCGCSQ--CSCCKPCYCSSGCG--------------SSCCQSSCCKPCCSQ 116

>APRR6_ARATH (Q9C9F6) Putative two-component response regulator-like APRR6|
           (Pseudo-response regulator 6)
          Length = 663

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
 Frame = +1

Query: 223 VWSVELHRKFVAAVNQLGIDKAVPKKI---LDLMNVENITRENVASHLQKYRLYLKRMSM 393
           +W+ E H KF+AA++ LG +    K I    + M   +I  +   S+   +   L ++SM
Sbjct: 226 LWNSERHMKFIAAISILGEEVLFKKPIGEKEETMPKFHIGGKLDLSNHSVHGNVLNKLSM 285

Query: 394 DASRQANLVAALGGRNPAYSNMNSMD 471
           +     N V +    NPAY N+ S+D
Sbjct: 286 N----VNFVPSTISNNPAY-NILSID 306

>ISP3_SCHPO (P40899) Sexual differentiation process protein isp3 (Meiotic|
           expression up-regulated protein 4)
          Length = 182

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 375 SEKDEYGCKQTG*PSCCTWRKESCLQQYEFNGC 473
           S  DE  C++   P CC  +K  C +  + NGC
Sbjct: 73  SSDDEESCEKKK-PKCCEKKKPKCCESEQNNGC 104

>NOD_DROME (P18105) Kinesin-like protein Nod|
          Length = 666

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +1

Query: 229 SVELHRKFVAAVNQLGIDKAVPKKILDLMNVENITRENVASHLQKYRLYLKRMSMDASRQ 408
           S  LHR      ++LG+     K+  +L+ +E  T E  + H+Q   L L     D+ + 
Sbjct: 376 SAVLHR----TRSELGMTPKAKKRARELLELEETTLELSSIHIQDSSLSLLGFHSDSDKD 431

Query: 409 ANLVAALGGRNPAY-SNMNS 465
            +L+    G+ P   S+ NS
Sbjct: 432 RHLMPPPTGQEPRQASSQNS 451

>OPA_DROME (P39768) Pair-rule protein odd-paired|
          Length = 609

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
 Frame = -3

Query: 175 SHQNRXXXXXXXLYPSVTASCCG*RHHSH-------LQHSAPSDWHH 56
           SH +          P   A+     HH+H        QH  PSDW+H
Sbjct: 528 SHHHHPHHHQAAPSPGAAAASASMLHHNHHLLYHPAAQHHPPSDWYH 574


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,344,182
Number of Sequences: 219361
Number of extensions: 976062
Number of successful extensions: 3783
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3740
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)