>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 80       tgctgagagcatgttgggaagtcttgctttagcttattgttatctactgttcatgat 136
                |||||||||||  || ||||||||||||||||| | ||||||||||||||| |||||
Sbjct: 29814138 tgctgagagcaaatttggaagtcttgctttagcgttttgttatctactgttgatgat 29814082



 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 1        gtttgggnaccaaggttgtggaggatgaggactaaac 37
                ||||||| ||||||||||| ||||||||||| |||||
Sbjct: 29814233 gtttgggaaccaaggttgttgaggatgaggagtaaac 29814197

>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 80    tgctgagagcatgttgggaagtcttgctttagcttattgttatctactgttcatgat 136
             |||||||||||  || ||||||||||||||||| | ||||||||||||||| |||||
Sbjct: 70483 tgctgagagcaaatttggaagtcttgctttagcgttttgttatctactgttgatgat 70427



 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 1     gtttgggnaccaaggttgtggaggatgaggactaaac 37
             ||||||| ||||||||||| ||||||||||| |||||
Sbjct: 70578 gtttgggaaccaaggttgttgaggatgaggagtaaac 70542

>emb|AJ417520.1|OSA417520 Oryza sativa partial mRNA for ribosomal protein L31 (xd5 gene)
          Length = 325

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 80  tgctgagagcatgttgggaagtcttgctttagcttattgttatctactgttcatgat 136
           |||||||||||  || ||||||||||||||||| | ||||||||||||||| |||||
Sbjct: 151 tgctgagagcaaatttggaagtcttgctttagcgttttgttatctactgttgatgat 207



 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 1  gtttgggnaccaaggttgtggaggatgaggactaaac 37
          ||||||| ||||||||||| ||||||||||| |||||
Sbjct: 56 gtttgggaaccaaggttgttgaggatgaggagtaaac 92

>dbj|AK105284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E05, full
            insert sequence
          Length = 2274

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                     
Query: 80   tgctgagagcatgttgggaagtcttgctttagcttattgttatctactgttcatgat 136
            |||||||||||  || ||||||||||||||||| | ||||||||||||||| |||||
Sbjct: 1594 tgctgagagcaaatttggaagtcttgctttagcgttttgttatctactgttgatgat 1650



 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                 
Query: 1    gtttgggnaccaaggttgtggaggatgaggactaaac 37
            ||||||| ||||||||||| ||||||||||| |||||
Sbjct: 1499 gtttgggaaccaaggttgttgaggatgaggagtaaac 1535

>ref|XM_467485.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 372

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 1   gtttgggnaccaaggttgtggaggatgagga 31
           ||||||| ||||||||||| |||||||||||
Sbjct: 338 gtttgggaaccaaggttgttgaggatgagga 368

>gb|BT017600.1| Zea mays clone EL01N0431G10.c mRNA sequence
          Length = 533

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 1   gtttgggnaccaaggttgtggagga 25
           ||||||| |||||||||||||||||
Sbjct: 336 gtttgggtaccaaggttgtggagga 360

>gb|AF457941.1| Zea mays clone cho1c.pk002.n14, mRNA sequence
          Length = 387

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 103 ttgctttagcttattgttatctactg 128
           |||||| |||||||||||||||||||
Sbjct: 266 ttgcttcagcttattgttatctactg 291



 Score = 42.1 bits (21), Expect = 0.67
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 1   gtttgggnaccaaggttgtggaggatgaggactaaaccct 40
           ||||||| || |||||||| ||||||||||| ||| ||||
Sbjct: 199 gtttgggaactaaggttgttgaggatgaggattaagccct 238

>gb|AY109331.1| Zea mays CL253_2 mRNA sequence
          Length = 2256

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 103 ttgctttagcttattgttatctactg 128
           |||||| |||||||||||||||||||
Sbjct: 184 ttgcttgagcttattgttatctactg 159



 Score = 42.1 bits (21), Expect = 0.67
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 1   gtttgggnaccaaggttgtggaggatgaggactaaaccct 40
           ||||||| || |||||||| ||||||||||| ||| ||||
Sbjct: 251 gtttgggaactaaggttgttgaggatgaggattaagccct 212

>gb|AC099062.2| Homo sapiens chromosome 1 clone RP5-1043L3, complete sequence
          Length = 101840

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 79   ctgctgagagcatgttgggaagtc 102
            ||||||||| ||||||||||||||
Sbjct: 2548 ctgctgagaccatgttgggaagtc 2525

>emb|AL604031.10| Mouse DNA sequence from clone RP23-24O5 on chromosome 11 Contains a
              ribosomal protein L13 (Rpl13) pseudogene, a novel gene and
              two CpG islands, complete sequence
          Length = 215675

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 163    tgagacgttggatattttgttcaa 186
              |||||| |||||||||||||||||
Sbjct: 141309 tgagacattggatattttgttcaa 141286

>gb|AC114486.2| Homo sapiens chromosome 1 clone RP11-371A23, complete sequence
          Length = 179070

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 44     tctgttgtttcaatcagttagaac 67
              |||||||| |||||||||||||||
Sbjct: 168531 tctgttgtatcaatcagttagaac 168554

>gb|AC022337.24| Homo sapiens 3 BAC RP11-87O3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 85148

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   catgatgttccatgacttct 150
             ||||||||||||||||||||
Sbjct: 43120 catgatgttccatgacttct 43139

>gb|AC091103.4| Homo sapiens chromosome 18, clone RP11-749G1, complete sequence
          Length = 204340

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    ttcatgatgttccatgactt 148
              ||||||||||||||||||||
Sbjct: 194699 ttcatgatgttccatgactt 194718

>gb|AC092392.2| Homo sapiens chromosome 1 clone RP4-544H6, complete sequence
          Length = 98286

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    ctgctgagagcatgttgggaagtc 102
             ||||||||| ||||||||||||||
Sbjct: 22936 ctgctgagaccatgttgggaagtc 22959

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 160      atttgagacgttggatattttgtt 183
                |||||||||||||||| |||||||
Sbjct: 17319043 atttgagacgttggattttttgtt 17319020

>gb|AC110763.4| Homo sapiens BAC clone RP11-57E2 from 4, complete sequence
          Length = 84182

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   ttcttgatagaagatttgag 166
             ||||||||||||||||||||
Sbjct: 64598 ttcttgatagaagatttgag 64617

>gb|AC154537.3| Mus musculus BAC clone RP23-451F20 from chromosome 13, complete
             sequence
          Length = 181229

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 86    gagcatgttgggaagtcttgcttt 109
             ||||||| ||||||||||||||||
Sbjct: 74407 gagcatgctgggaagtcttgcttt 74384

>gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 120070

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    cttgctttagcttattgtta 121
              ||||||||||||||||||||
Sbjct: 106658 cttgctttagcttattgtta 106677

>gb|AC073942.2|F16L1 Sequence of BAC F16L1 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 36030

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 57   tcagttagaacttaatacatatct 80
            ||||||||||||||| ||||||||
Sbjct: 3835 tcagttagaacttaaaacatatct 3812

>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H06
          Length = 142832

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   atttgagacgttggatattttgtt 183
             |||||||||||||||| |||||||
Sbjct: 55636 atttgagacgttggattttttgtt 55613

>emb|AL928896.6| Mouse DNA sequence from clone RP23-42H18 on chromosome 2, complete
             sequence
          Length = 193932

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    ctgctgagagcatgttggga 98
             ||||||||||||||||||||
Sbjct: 16902 ctgctgagagcatgttggga 16921


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,923,448
Number of Sequences: 3902068
Number of extensions: 1923448
Number of successful extensions: 132054
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131947
Number of HSP's gapped (non-prelim): 107
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)