>PURL_CAUCR (Q9A5F0) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 739

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 257 LIPLDEPAYLVSTPLPFTVLSRTTEAKASSKLRGSAAGSSSIAPTGMPSLSVPRMK 90
           L+  D+  YL++TP P  VL    EA   + + G  AG  + A  G+ S+S+  ++
Sbjct: 669 LLGEDQARYLIATPDPDAVLEAAKEAGVHANVAG-VAGGEAFASDGLFSVSLDALR 723

>RIMM_LACJO (Q74IQ5) Probable 16S rRNA-processing protein rimM|
          Length = 173

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +1

Query: 415 QDEFECPDSEFYEFTEIRLIQKFE-PG--QVWALYSDMDK---FPNYYAIIKKVDLKNNK 576
           +D   CP  +     ++ +++  E PG   +W +  +  K    PN  +++KKVDL N +
Sbjct: 101 KDILNCPVYDAETGEKLGVLENIETPGANDIWEIKPEKGKSFWIPNIESVVKKVDLANKR 160

Query: 577 VQVKWLD 597
           ++V  L+
Sbjct: 161 IEVTLLE 167

>SUCB2_PIG (P53590) Succinyl-CoA ligase [GDP-forming] beta-chain,|
           mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA
           synthetase, betaG chain) (SCS-betaG) (GTP-specific
           succinyl-CoA synthetase beta subunit) (Fragment)
          Length = 433

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 23/85 (27%), Positives = 42/85 (49%)
 Frame = +1

Query: 148 AALPLNLEEAFASVVLESTVKGKGVDTKYAGSSSGINSGKGPEKVGEVQHATCMNTGLFT 327
           AA  LN +E      + +  +GKGV +  +G   G++  K PE VG++     +   L T
Sbjct: 72  AAKRLNAKEIVLKAQILAGGRGKGVFS--SGLKGGVHLTKDPEVVGQLA-KQMIGYNLAT 128

Query: 328 RATKEEKKEHHTPSTVEGVDVNEES 402
           + T +E  + +     E +D++ E+
Sbjct: 129 KQTPKEGVKVNKVMVAEALDISRET 153

>SUCB2_MOUSE (Q9Z2I8) Succinyl-CoA ligase [GDP-forming] beta-chain,|
           mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA
           synthetase, betaG chain) (SCS-betaG) (GTP-specific
           succinyl-CoA synthetase beta subunit)
          Length = 433

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 27/108 (25%), Positives = 48/108 (44%)
 Frame = +1

Query: 79  VPHHFMRGTEREGIPVGAIELDPAALPLNLEEAFASVVLESTVKGKGVDTKYAGSSSGIN 258
           V   F+  T +E +         AA  LN +E      + +  +GKGV    +G   G++
Sbjct: 57  VQRFFVANTAKEALE--------AAKRLNAKEIVLKAQILAGGRGKGVFN--SGLKGGVH 106

Query: 259 SGKGPEKVGEVQHATCMNTGLFTRATKEEKKEHHTPSTVEGVDVNEES 402
             K P+ VGE+     +   L T+ T +E  + +     E +D++ E+
Sbjct: 107 LTKDPKVVGELAQ-QMIGYNLATKQTPKEGVKVNKVMVAEALDISRET 153

>PYRF_ASPAW (Q5J2D0) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase) (Uridine
           5'-monophosphate synthase) (UMP synthase)
          Length = 277

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
 Frame = +1

Query: 85  HHFMRGTEREGIPVG-AIELDPAALPLNLEEAFASVVLESTVKGKGVDTKYAGSSSGINS 261
           H+F+   +R+ I +G  ++       L + E +A ++  S + G+G+    A ++S  + 
Sbjct: 86  HNFLIFEDRKFIDIGNTVQKQYHRGTLRISE-WAHIINCSILPGEGIVEALAQTASAPDF 144

Query: 262 GKGPEK----VGEVQHATCMNTGLFTRATKEEKKEHHTPSTVEGVDVNEESDGIVQDEFE 429
           G GPE+    + E+     + TG +T ++ +  +++   + V G  V+  S G VQ E  
Sbjct: 145 GYGPERGLLILAEMTSKGSLATGQYTTSSVDYARKY--KNFVMGF-VSTRSLGEVQSEVS 201

Query: 430 CPDSE--FYEFT 459
            P  E  F  FT
Sbjct: 202 SPSDEEDFVVFT 213

>CENPB_CRIGR (P48988) Major centromere autoantigen B (Centromere protein B)|
           (CENP-B)
          Length = 606

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
 Frame = +1

Query: 196 ESTVKGKGVDTKYAGSSSGINSGKGPEKVGEVQHATCMNTGLFTRATKEEKKEHHTPSTV 375
           E   +G+G + +          G+G E+VGE +       G  +   +EE++E    S+ 
Sbjct: 418 EEEEEGEGEEEEEEEEEGEEEGGEG-EEVGEEEEVE--EEGDESDEEEEEEEEEEEESSS 474

Query: 376 EGVDVNEESDGI-----------VQDEFECPDSEFYE 453
           EG++  + + G+           VQ+E +CP   F E
Sbjct: 475 EGLEAEDWAQGVVEASGGFGGYSVQEEAQCPTLHFLE 511

>RIMM_LACAC (Q5FJK6) Probable 16S rRNA-processing protein rimM|
          Length = 171

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
 Frame = +1

Query: 385 DVNEESDGIV--QDEFECP--DSEFYE-FTEIRLIQKFEPGQVWALYSDMDK---FPNYY 540
           D  E  DG+   +D F+C   D+E  +   +I  IQ      +W ++ D  K    PN  
Sbjct: 87  DRGELPDGVYYYKDIFDCGVIDNETGKRLGKITDIQSPGANDIWLVHEDNGKEYWIPNIA 146

Query: 541 AIIKKVDLKNNKVQVKWLD 597
            ++KK+D+ + KV V+ ++
Sbjct: 147 DVVKKIDIADKKVYVELME 165

>KPRS_OCEIH (Q8EU34) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 317

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -1

Query: 332 ALVKSPVFMHVACCTSPTFSGPLPELIPLDEPAYLV---STPLPFTVLSRTTEAKASSKL 162
           AL+++      ACCT P  SGP  E I   +   LV   S PLP    S    A + + L
Sbjct: 239 ALIENGAKEVYACCTHPVLSGPAIERIDNSKIKELVITDSIPLPDEKFSTKITALSVAPL 298

Query: 161 RGSA 150
            G A
Sbjct: 299 IGEA 302

>SYG_BACHK (Q6HBZ1) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 458

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 373 VEGVDVNEESDGIVQDEFECPDSEFYEFTEIR 468
           V+G+  ++ +D + + E +CPD    EFTEIR
Sbjct: 115 VDGLTFDQMADLMKEHEVKCPDCSSEEFTEIR 146

>YUFN_BACSU (O05252) Hypothetical lipoprotein yufN precursor|
          Length = 350

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = +1

Query: 220 VDTKYAGSSSGINSGKGPEK------VGEVQH-ATCMNTGLFTRATKEEKKEHHTPSTVE 378
           V+ KYAG     + GK   +      V  + H A    TG+FT A   +K++      V 
Sbjct: 189 VEVKYAGGFDKADVGKATAESMYKSGVDVIYHSAGATGTGVFTEAKNLKKEDPKRDVWVI 248

Query: 379 GVDVNEESDGIVQ 417
           GVD ++ ++G V+
Sbjct: 249 GVDKDQYAEGQVE 261

>HIS5_ARATH (Q9SZ30) Imidazole glycerol phosphate synthase hisHF, chloroplast|
           precursor (IGP synthase) (ImGP synthase) (IGPS)
           [Includes: Glutamine amidotransferase (EC 2.4.2.-);
           Cyclase (EC 4.1.3.-)]
          Length = 592

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
 Frame = +1

Query: 109 REGIPVGAIELDPAALPLNLEEAFASVVLESTVKGKGVD---TKYAGSSSGI----NSGK 267
           REG P+GA EL  A   L   E   + + +   +GKG D    K    S GI    +SG 
Sbjct: 487 REGRPIGAFELAKAVEELGAGEILLNCI-DCDGQGKGFDIDLVKLISDSVGIPVIASSGA 545

Query: 268 G-PEKVGEVQHAT----CMNTGLFTR--ATKEEKKEHHTPSTVE 378
           G P+   EV   T     +  G+F R     +  KEH     +E
Sbjct: 546 GTPDHFSEVFEKTNASAALAAGIFHRKEVPIQSVKEHLQEERIE 589

>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = -1

Query: 269 PLPEL------IPLDEPAYLVSTPLPFTVLSRTTEAKASSKLRGSAAGSSSIAPTGMPSL 108
           P+P+L      +P  E A   S+P+P T L    EA AS ++  +   +    P   PSL
Sbjct: 547 PIPDLLEQTTSVPAVEAAESTSSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSL 606

Query: 107 SVP 99
           + P
Sbjct: 607 ATP 609

>CH60_GLUOX (Q5FPQ6) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 543

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = +1

Query: 109 REGIPVGAIELDPAALPLNLEEAFASVVLESTVKGKGVDTKYAGSSSGINSGKGPEKVGE 288
           REG    A  ++P  L   +++A   VV +     K + +    +  G  S  G  ++GE
Sbjct: 101 REGAKAVAAGMNPMDLKRGIDKAVGVVVDQLKSNTKKITSPEEIAQVGTISANGETEIGE 160

Query: 289 VQHATCMNTGLFTRATKEEKKEHHTP-STVEGV 384
           +  +     G     T EE K  HT    VEG+
Sbjct: 161 MIASAMQKVGSEGVITVEEAKGLHTELDVVEGM 193

>SYG_BACCZ (Q632E8) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 458

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 373 VEGVDVNEESDGIVQDEFECPDSEFYEFTEIR 468
           V+G+  ++ +D + + E +CPD    EFTEIR
Sbjct: 115 VDGLTFDQMADLMKEHEVKCPDCGSEEFTEIR 146

>SYG_BACC1 (Q72YG8) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 458

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 373 VEGVDVNEESDGIVQDEFECPDSEFYEFTEIR 468
           V+G+  ++ +D + + E +CPD    EFTEIR
Sbjct: 115 VDGLTFDQMADLMKEHEVKCPDCGSEEFTEIR 146

>SYG_BACAN (Q81XT3) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 458

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 373 VEGVDVNEESDGIVQDEFECPDSEFYEFTEIR 468
           V+G+  ++ +D + + E +CPD    EFTEIR
Sbjct: 115 VDGLTFDQMADLMKEHEVKCPDCGSEEFTEIR 146

>MYC_AVIMD (P06295) Viral myc transforming protein (v-Myc)|
          Length = 416

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = +1

Query: 217 GVDTKYAGSSSGINSGKGPEKVGEVQHATC----MNTGLFTRATKEEKKEHHTPSTVEGV 384
           GVDT    SS      +  E++  V  A       +T   T A++E  K HH+P  ++  
Sbjct: 218 GVDTPPTTSSDSEEEQEEDEEIDVVTLAEANESESSTESSTEASEEHCKPHHSPLVLKRC 277

Query: 385 DVNEESDGIVQDEFECPDSEFYEFTEIRLIQKFEPGQV 498
            VN     I Q  +  P S   E+   + + K + G+V
Sbjct: 278 QVN-----IHQHNYAAPPSTKVEYPAAKRL-KLDSGRV 309


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,770,875
Number of Sequences: 219361
Number of extensions: 1776935
Number of successful extensions: 5575
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5569
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)