ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags35k04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 151 bits (76), Expect = 1e-33 Identities = 114/127 (89%) Strand = Plus / Plus Query: 4 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgatgacgaccagcgctac 63 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 28305615 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgacgacgaccagcggtac 28305674 Query: 64 gccgacgctgctgatgtgctcgccgcggctgcggncgccgggaacttcccctccgctgcc 123 |||||||| || || |||||||| ||||| |||| | ||| ||||||||||||| |||| Sbjct: 28305675 gccgacgccgccgaggtgctcgcggcggccgcggcctccgccaacttcccctccggtgcc 28305734 Query: 124 tctgatt 130 || |||| Sbjct: 28305735 tccgatt 28305741 Score = 117 bits (59), Expect = 2e-23 Identities = 114/132 (86%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 134 gttctgataaagatgaccaagaccctaatgagg---aaggctcaatgttgggtttacaaa 190 ||||||| |||||||| ||||| |||| |||| ||||||||||| |||| | |||| Sbjct: 28306914 gttctgacaaagatgatcaagatcctagcgaggttgaaggctcaatgctggggctccaaa 28306973 Query: 191 gttactgggatgcttcttattcagaagatctcacaaattttcangaacatgggcatgctg 250 |||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 28306974 gttattgggatgcttcttattcagaagatcttgcaaattttcaggaacatgggcatgctg 28307033 Query: 251 tagagatatggt 262 ||| ||||||| Sbjct: 28307034 gagaaatatggt 28307045 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 4 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgatgacgaccagcgctac 63 ||||||||||||||| | |||||| ||||||||||| ||||| ||||| ||||| ||| Sbjct: 1182645 gcggactcgtggtccatcaagagcgactacgggagcaccctcgacgacgagcagcggtac 1182704 Query: 64 gccgacgc 71 |||||||| Sbjct: 1182705 gccgacgc 1182712
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 151 bits (76), Expect = 1e-33 Identities = 114/127 (89%) Strand = Plus / Plus Query: 4 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgatgacgaccagcgctac 63 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 140122 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgacgacgaccagcggtac 140181 Query: 64 gccgacgctgctgatgtgctcgccgcggctgcggncgccgggaacttcccctccgctgcc 123 |||||||| || || |||||||| ||||| |||| | ||| ||||||||||||| |||| Sbjct: 140182 gccgacgccgccgaggtgctcgcggcggccgcggcctccgccaacttcccctccggtgcc 140241 Query: 124 tctgatt 130 || |||| Sbjct: 140242 tccgatt 140248 Score = 117 bits (59), Expect = 2e-23 Identities = 114/132 (86%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 134 gttctgataaagatgaccaagaccctaatgagg---aaggctcaatgttgggtttacaaa 190 ||||||| |||||||| ||||| |||| |||| ||||||||||| |||| | |||| Sbjct: 141421 gttctgacaaagatgatcaagatcctagcgaggttgaaggctcaatgctggggctccaaa 141480 Query: 191 gttactgggatgcttcttattcagaagatctcacaaattttcangaacatgggcatgctg 250 |||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 141481 gttattgggatgcttcttattcagaagatcttgcaaattttcaggaacatgggcatgctg 141540 Query: 251 tagagatatggt 262 ||| ||||||| Sbjct: 141541 gagaaatatggt 141552
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 151 bits (76), Expect = 1e-33 Identities = 114/127 (89%) Strand = Plus / Plus Query: 4 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgatgacgaccagcgctac 63 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 20715 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgacgacgaccagcggtac 20774 Query: 64 gccgacgctgctgatgtgctcgccgcggctgcggncgccgggaacttcccctccgctgcc 123 |||||||| || || |||||||| ||||| |||| | ||| ||||||||||||| |||| Sbjct: 20775 gccgacgccgccgaggtgctcgcggcggccgcggcctccgccaacttcccctccggtgcc 20834 Query: 124 tctgatt 130 || |||| Sbjct: 20835 tccgatt 20841 Score = 117 bits (59), Expect = 2e-23 Identities = 114/132 (86%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 134 gttctgataaagatgaccaagaccctaatgagg---aaggctcaatgttgggtttacaaa 190 ||||||| |||||||| ||||| |||| |||| ||||||||||| |||| | |||| Sbjct: 22014 gttctgacaaagatgatcaagatcctagcgaggttgaaggctcaatgctggggctccaaa 22073 Query: 191 gttactgggatgcttcttattcagaagatctcacaaattttcangaacatgggcatgctg 250 |||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 22074 gttattgggatgcttcttattcagaagatcttgcaaattttcaggaacatgggcatgctg 22133 Query: 251 tagagatatggt 262 ||| ||||||| Sbjct: 22134 gagaaatatggt 22145
>ref|NM_192095.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1272 Score = 143 bits (72), Expect = 3e-31 Identities = 104/115 (90%) Strand = Plus / Plus Query: 4 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgatgacgaccagcgctac 63 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 169 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgacgacgaccagcggtac 228 Query: 64 gccgacgctgctgatgtgctcgccgcggctgcggncgccgggaacttcccctccg 118 |||||||| || || |||||||| ||||| |||| | ||| ||||||||||||| Sbjct: 229 gccgacgccgccgaggtgctcgcggcggccgcggcctccgccaacttcccctccg 283 Score = 115 bits (58), Expect = 7e-23 Identities = 113/131 (86%), Gaps = 3/131 (2%) Strand = Plus / Plus Query: 133 tgttctgataaagatgaccaagaccctaatgagg---aaggctcaatgttgggtttacaa 189 |||||||| |||||||| ||||| |||| |||| ||||||||||| |||| | ||| Sbjct: 495 tgttctgacaaagatgatcaagatcctagcgaggttgaaggctcaatgctggggctccaa 554 Query: 190 agttactgggatgcttcttattcagaagatctcacaaattttcangaacatgggcatgct 249 ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 555 agttattgggatgcttcttattcagaagatcttgcaaattttcaggaacatgggcatgct 614 Query: 250 gtagagatatg 260 | ||| ||||| Sbjct: 615 ggagaaatatg 625
>ref|XM_549955.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1309 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 4 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgatgacgaccagcgctac 63 ||||||||||||||| | |||||| ||||||||||| ||||| ||||| ||||| ||| Sbjct: 181 gcggactcgtggtccatcaagagcgactacgggagcaccctcgacgacgagcagcggtac 240 Query: 64 gccgacgc 71 |||||||| Sbjct: 241 gccgacgc 248
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C01 Length = 78600 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 4 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgatgacgaccagcgctac 63 ||||||||||||||| | |||||| ||||||||||| ||||| ||||| ||||| ||| Sbjct: 36948 gcggactcgtggtccatcaagagcgactacgggagcaccctcgacgacgagcagcggtac 37007 Query: 64 gccgacgc 71 |||||||| Sbjct: 37008 gccgacgc 37015
>dbj|AK071475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091F21, full insert sequence Length = 1310 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 4 gcggactcgtggtccgtgcggagcgagtacgggagcacgctcgatgacgaccagcgctac 63 ||||||||||||||| | |||||| ||||||||||| ||||| ||||| ||||| ||| Sbjct: 182 gcggactcgtggtccatcaagagcgactacgggagcaccctcgacgacgagcagcggtac 241 Query: 64 gccgacgc 71 |||||||| Sbjct: 242 gccgacgc 249
>gb|AC144375.14| Medicago truncatula clone mth2-11p13, complete sequence Length = 123953 Score = 56.0 bits (28), Expect = 6e-05 Identities = 66/79 (83%) Strand = Plus / Minus Query: 172 tcaatgttgggtttacaaagttactgggatgcttcttattcagaagatctcacaaatttt 231 |||||| |||| || || ||||||||||||||| | ||| |||| || || ||||||||| Sbjct: 26022 tcaatgctgggatttcagagttactgggatgctgcatatacagacgagcttacaaatttt 25963 Query: 232 cangaacatgggcatgctg 250 || ||||| || ||||||| Sbjct: 25962 catgaacacggtcatgctg 25944
>dbj|AB190353.1| Brassica rapa BrSLGf2b, BrSLGf2a genes, complete cds Length = 39220 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 24 gagcgagtacgggagcacgctcgatgacgaccagcgctacgccgacgc 71 |||||||||||| ||||| ||||| ||||| |||||| |||||||||| Sbjct: 10939 gagcgagtacggaagcactctcgacgacgatcagcgccacgccgacgc 10892
>gb|U66193.1|BNU66193 Brassica napus S locus-linked gene two (SLL2) mRNA, complete cds Length = 1183 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 24 gagcgagtacgggagcacgctcgatgacgaccagcgctacgccgacgc 71 |||||||||||| ||||| ||||| ||||| |||||| |||||||||| Sbjct: 129 gagcgagtacggaagcactctcgacgacgatcagcgccacgccgacgc 176
>dbj|AB012867.1| Brassica rapa mRNA for SLL2-S9-protein, complete cds Length = 2078 Score = 56.0 bits (28), Expect = 6e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 24 gagcgagtacgggagcacgctcgatgacgaccagcgctacgccgacgc 71 |||||||||||| ||||| ||||| ||||| |||||| |||||||||| Sbjct: 996 gagcgagtacggaagcactctcgacgacgatcagcgccacgccgacgc 1043
>emb|AJ245479.1|BNA245479 Brassica napus subsp. napus Sll3, slk, srk, CePP, Fmt, SIAH1, AtPP, SIAH2, & ClpP genes Length = 64348 Score = 46.1 bits (23), Expect = 0.055 Identities = 41/47 (87%) Strand = Plus / Minus Query: 25 agcgagtacgggagcacgctcgatgacgaccagcgctacgccgacgc 71 ||||||||||| ||||| ||||| ||||| |||||| |||| ||||| Sbjct: 25386 agcgagtacggaagcactctcgacgacgatcagcgccacgctgacgc 25340
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 76 gatgtgctcgccgcggctgcgg 97 |||||||||||||||||||||| Sbjct: 2178756 gatgtgctcgccgcggctgcgg 2178777
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 76 gatgtgctcgccgcggctgcgg 97 |||||||||||||||||||||| Sbjct: 2195969 gatgtgctcgccgcggctgcgg 2195948
>gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome 1, complete sequence Length = 180773 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 tctgataaagatgaccaagacc 157 |||||||||||||||||||||| Sbjct: 117123 tctgataaagatgaccaagacc 117144
>gb|AC122474.5| Mus musculus chromosome 1 clone RP24-331M14, complete sequence Length = 176800 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 136 tctgataaagatgaccaagacc 157 |||||||||||||||||||||| Sbjct: 131535 tctgataaagatgaccaagacc 131514
>emb|Y10778.1|SSY10778 S.stapfianus pSD.8a mRNA Length = 310 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 gctgcctctgattactgttct 138 ||||||||||||||||||||| Sbjct: 67 gctgcctctgattactgttct 47
>emb|X77865.1|SGKSACPG S.griseus genes for ketosynthase, acyl carrier protein, ketoreductase, cyclase and dehydrase Length = 5364 Score = 42.1 bits (21), Expect = 0.86 Identities = 27/29 (93%) Strand = Plus / Plus Query: 26 gcgagtacgggagcacgctcgatgacgac 54 |||||||||||| ||||||||| |||||| Sbjct: 2972 gcgagtacgggatcacgctcgacgacgac 3000
>gb|AY604697.1| Chaetoceros gracilis ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit gene, partial cds; chloroplast Length = 1416 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 gttactgggatgcttcttattcag 214 |||||||||||||||| ||||||| Sbjct: 41 gttactgggatgcttcatattcag 64
>gb|AC007744.2| Homo sapiens BAC clone RP11-482H16 from 2, complete sequence Length = 199218 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 agaccctaatgaggaaggct 172 |||||||||||||||||||| Sbjct: 143984 agaccctaatgaggaaggct 143965 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,622,892 Number of Sequences: 3902068 Number of extensions: 1622892 Number of successful extensions: 29002 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28896 Number of HSP's gapped (non-prelim): 106 length of query: 262 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 240 effective length of database: 17,147,199,772 effective search space: 4115327945280 effective search space used: 4115327945280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
