ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags35j15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome... 62 9e-07
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 9e-07
3dbj|AK071098.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 9e-07
4dbj|AK061258.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 9e-07
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 9e-07
6ref|XM_501585.1| Yarrowia lipolytica CLIB122, YALI0C08140g predi... 42 0.80
7emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 42 0.80
8gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 3.2
9gb|AC129024.4| Mus musculus BAC clone RP23-436D14 from chromosom... 40 3.2
10ref|XM_662562.1| Cryptosporidium hominis TU502 nucleolar protein... 40 3.2
11gb|AC129961.2| Sus scrofa, clone RP44-428N16, complete sequence 40 3.2

>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08,
              complete sequence
          Length = 173088

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                             
Query: 106    ggatgggcgaccatgtggtggtgaatgtgga 136
              |||||||||||||||||||||||||||||||
Sbjct: 128604 ggatgggcgaccatgtggtggtgaatgtgga 128574



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                               
Query: 106      ggatgggcgaccatgtggtggtgaatgtgga 136
                |||||||||||||||||||||||||||||||
Sbjct: 22212694 ggatgggcgaccatgtggtggtgaatgtgga 22212724



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>dbj|AK071098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081C09, full
           insert sequence
          Length = 1505

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 106 ggatgggcgaccatgtggtggtgaatgtgga 136
           |||||||||||||||||||||||||||||||
Sbjct: 289 ggatgggcgaccatgtggtggtgaatgtgga 319



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>dbj|AK061258.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B06, full
           insert sequence
          Length = 1390

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 106 ggatgggcgaccatgtggtggtgaatgtgga 136
           |||||||||||||||||||||||||||||||
Sbjct: 187 ggatgggcgaccatgtggtggtgaatgtgga 217



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                               
Query: 106      ggatgggcgaccatgtggtggtgaatgtgga 136
                |||||||||||||||||||||||||||||||
Sbjct: 22522605 ggatgggcgaccatgtggtggtgaatgtgga 22522635



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>ref|XM_501585.1| Yarrowia lipolytica CLIB122, YALI0C08140g predicted mRNA
          Length = 1077

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 108 atgggcgaccatgtggtggtg 128
           |||||||||||||||||||||
Sbjct: 96  atgggcgaccatgtggtggtg 76



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 108     atgggcgaccatgtggtggtg 128
               |||||||||||||||||||||
Sbjct: 1088271 atgggcgaccatgtggtggtg 1088251



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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 196     tggctgctgttgatatggtggagg 219
               ||||||||||||||||| ||||||
Sbjct: 3531496 tggctgctgttgatatgctggagg 3531519



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>gb|AC129024.4| Mus musculus BAC clone RP23-436D14 from chromosome 6, complete sequence
          Length = 202285

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 197    ggctgctgttgatatggtggagga 220
              |||||||||||||||| |||||||
Sbjct: 110936 ggctgctgttgatatgctggagga 110959



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>ref|XM_662562.1| Cryptosporidium hominis TU502 nucleolar protein-like (Chro.60375)
            partial mRNA
          Length = 1629

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  gctgctgttgatatggtgga 217
            ||||||||||||||||||||
Sbjct: 1039 gctgctgttgatatggtgga 1058



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>gb|AC129961.2| Sus scrofa, clone RP44-428N16, complete sequence
          Length = 154348

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    ctgagaagccatctgaggct 188
              ||||||||||||||||||||
Sbjct: 149507 ctgagaagccatctgaggct 149526


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,871,911
Number of Sequences: 3902068
Number of extensions: 1871911
Number of successful extensions: 37654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37572
Number of HSP's gapped (non-prelim): 82
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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