| Clone Name | bags35j15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08, complete sequence Length = 173088 Score = 61.9 bits (31), Expect = 9e-07 Identities = 31/31 (100%) Strand = Plus / Minus Query: 106 ggatgggcgaccatgtggtggtgaatgtgga 136 ||||||||||||||||||||||||||||||| Sbjct: 128604 ggatgggcgaccatgtggtggtgaatgtgga 128574
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 61.9 bits (31), Expect = 9e-07 Identities = 31/31 (100%) Strand = Plus / Plus Query: 106 ggatgggcgaccatgtggtggtgaatgtgga 136 ||||||||||||||||||||||||||||||| Sbjct: 22212694 ggatgggcgaccatgtggtggtgaatgtgga 22212724
>dbj|AK071098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081C09, full insert sequence Length = 1505 Score = 61.9 bits (31), Expect = 9e-07 Identities = 31/31 (100%) Strand = Plus / Plus Query: 106 ggatgggcgaccatgtggtggtgaatgtgga 136 ||||||||||||||||||||||||||||||| Sbjct: 289 ggatgggcgaccatgtggtggtgaatgtgga 319
>dbj|AK061258.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B06, full insert sequence Length = 1390 Score = 61.9 bits (31), Expect = 9e-07 Identities = 31/31 (100%) Strand = Plus / Plus Query: 106 ggatgggcgaccatgtggtggtgaatgtgga 136 ||||||||||||||||||||||||||||||| Sbjct: 187 ggatgggcgaccatgtggtggtgaatgtgga 217
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 61.9 bits (31), Expect = 9e-07 Identities = 31/31 (100%) Strand = Plus / Plus Query: 106 ggatgggcgaccatgtggtggtgaatgtgga 136 ||||||||||||||||||||||||||||||| Sbjct: 22522605 ggatgggcgaccatgtggtggtgaatgtgga 22522635
>ref|XM_501585.1| Yarrowia lipolytica CLIB122, YALI0C08140g predicted mRNA Length = 1077 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 atgggcgaccatgtggtggtg 128 ||||||||||||||||||||| Sbjct: 96 atgggcgaccatgtggtggtg 76
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 atgggcgaccatgtggtggtg 128 ||||||||||||||||||||| Sbjct: 1088271 atgggcgaccatgtggtggtg 1088251
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tggctgctgttgatatggtggagg 219 ||||||||||||||||| |||||| Sbjct: 3531496 tggctgctgttgatatgctggagg 3531519
>gb|AC129024.4| Mus musculus BAC clone RP23-436D14 from chromosome 6, complete sequence Length = 202285 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ggctgctgttgatatggtggagga 220 |||||||||||||||| ||||||| Sbjct: 110936 ggctgctgttgatatgctggagga 110959
>ref|XM_662562.1| Cryptosporidium hominis TU502 nucleolar protein-like (Chro.60375) partial mRNA Length = 1629 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gctgctgttgatatggtgga 217 |||||||||||||||||||| Sbjct: 1039 gctgctgttgatatggtgga 1058
>gb|AC129961.2| Sus scrofa, clone RP44-428N16, complete sequence Length = 154348 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ctgagaagccatctgaggct 188 |||||||||||||||||||| Sbjct: 149507 ctgagaagccatctgaggct 149526 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,871,911 Number of Sequences: 3902068 Number of extensions: 1871911 Number of successful extensions: 37654 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37572 Number of HSP's gapped (non-prelim): 82 length of query: 246 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 224 effective length of database: 17,147,199,772 effective search space: 3840972748928 effective search space used: 3840972748928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)