| Clone Name | bags35i03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016541.1| Zea mays clone Contig374 mRNA sequence Length = 1664 Score = 71.9 bits (36), Expect = 6e-10 Identities = 93/112 (83%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccgccgtgggcaactacgcgctcggtcccaacgtctctggc 129 ||||||| ||| || || ||||| || ||||| ||||||||||| ||||| |||| | | Sbjct: 275 gccgccgccgcgtacgcggccgcggtcggcaaatacgcgctcgggcccaagatctccgac 334 Query: 130 tgggacgagcagcgccgacggtggctcacgcagaaccagggcttcccagcca 181 ||||||| |||||||||||||||||| | ||||||| |||||||| |||| Sbjct: 335 tgggacgcgcagcgccgacggtggctggcccagaaccctggcttcccggcca 386
>emb|AM181327.1| Zea mays mRNA for putative glycosyltransferase (x34.2 gene) Length = 2130 Score = 71.9 bits (36), Expect = 6e-10 Identities = 93/112 (83%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccgccgtgggcaactacgcgctcggtcccaacgtctctggc 129 ||||||| ||| || || ||||| || ||||| ||||||||||| ||||| |||| | | Sbjct: 756 gccgccgccgcgtacgcggccgcggtcggcaaatacgcgctcgggcccaagatctccgac 815 Query: 130 tgggacgagcagcgccgacggtggctcacgcagaaccagggcttcccagcca 181 ||||||| |||||||||||||||||| | ||||||| |||||||| |||| Sbjct: 816 tgggacgcgcagcgccgacggtggctggcccagaaccctggcttcccggcca 867
>ref|XM_466075.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1910 Score = 50.1 bits (25), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Plus Query: 102 ctacgcgctcggtcccaacgtctctggctgggacgagcagcgccgacggtggctcacgca 161 |||||||||||| ||||| |||| | |||||||| |||||||| || ||||||| ||| Sbjct: 711 ctacgcgctcggccccaagatctccgactgggacggtcagcgccgccgctggctcaggca 770 Query: 162 gaacc 166 ||||| Sbjct: 771 gaacc 775
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Minus Query: 102 ctacgcgctcggtcccaacgtctctggctgggacgagcagcgccgacggtggctcacgca 161 |||||||||||| ||||| |||| | |||||||| |||||||| || ||||||| ||| Sbjct: 19472268 ctacgcgctcggccccaagatctccgactgggacggtcagcgccgccgctggctcaggca 19472209 Query: 162 gaacc 166 ||||| Sbjct: 19472208 gaacc 19472204
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 50.1 bits (25), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Minus Query: 102 ctacgcgctcggtcccaacgtctctggctgggacgagcagcgccgacggtggctcacgca 161 |||||||||||| ||||| |||| | |||||||| |||||||| || ||||||| ||| Sbjct: 89795 ctacgcgctcggccccaagatctccgactgggacggtcagcgccgccgctggctcaggca 89736 Query: 162 gaacc 166 ||||| Sbjct: 89735 gaacc 89731
>dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145D01, full insert sequence Length = 1910 Score = 50.1 bits (25), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Plus Query: 102 ctacgcgctcggtcccaacgtctctggctgggacgagcagcgccgacggtggctcacgca 161 |||||||||||| ||||| |||| | |||||||| |||||||| || ||||||| ||| Sbjct: 711 ctacgcgctcggccccaagatctccgactgggacggtcagcgccgccgctggctcaggca 770 Query: 162 gaacc 166 ||||| Sbjct: 771 gaacc 775
>emb|AJ338497.1|HSA338497 Homo sapiens genomic sequence surrounding NotI site, clone NR5-GA3RS Length = 696 Score = 46.1 bits (23), Expect = 0.036 Identities = 26/27 (96%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||||||||| ||||||||||||| Sbjct: 93 gccgccgtcgcctctgccgccgccgtg 119
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccg 91 |||||||||||||||||||||| Sbjct: 3603595 gccgccgtcgcctatgccgccg 3603616
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 cgcagaaccagggcttccca 177 |||||||||||||||||||| Sbjct: 480663 cgcagaaccagggcttccca 480682
>gb|AE004605.1| Pseudomonas aeruginosa PAO1, section 166 of 529 of the complete genome Length = 10949 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cgccgccgtgggcaactacg 106 |||||||||||||||||||| Sbjct: 10778 cgccgccgtgggcaactacg 10759
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 gaagccgccgtcgcctatgccgcc 90 |||||||||| ||||||||||||| Sbjct: 3185665 gaagccgccgccgcctatgccgcc 3185688
>ref|NM_196941.1| Oryza sativa (japonica cultivar-group) putative stachyose synthase (OSJNBa0006L06.27), mRNA Length = 615 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 72 cgccgtcgcctatgccgccgccg 94 ||||||||||| ||||||||||| Sbjct: 27 cgccgtcgcctttgccgccgccg 5
>gb|AY710429.1| Cryptococcus gattii strain E566 MATa locus, complete sequence Length = 144400 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 70 gccgccgtcgcctatgccgccgc 92 ||||||||||||| ||||||||| Sbjct: 138494 gccgccgtcgcctctgccgccgc 138472
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 tcaggaagccgccgtcgcc 81 ||||||||||||||||||| Sbjct: 158945 tcaggaagccgccgtcgcc 158963
>gb|AY077729.1| Podospora anserina potassium transporter (trk1) gene, complete cds Length = 4171 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 cgcagaaccagggcttccc 176 ||||||||||||||||||| Sbjct: 854 cgcagaaccagggcttccc 872
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 tcaggaagccgccgtcgcc 81 ||||||||||||||||||| Sbjct: 694894 tcaggaagccgccgtcgcc 694876
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 72 cgccgtcgcctatgccgccgccg 94 ||||||||||| ||||||||||| Sbjct: 154647 cgccgtcgcctttgccgccgccg 154625
>gb|AF344425.1| Didelphis virginiana mannose-6-phosphate/insulin-like growth factor II receptor (m6p/igf2r) gene, promoter and exon 1 Length = 1460 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 72 cgccgtcgcctatgccgccgccg 94 ||||||||||| ||||||||||| Sbjct: 1285 cgccgtcgcctctgccgccgccg 1307
>gb|AF342813.1|AF342813 Didelphis virginiana mannose-6-phosphate/insulin-like growth factor II receptor (m6p/igf2r) mRNA, complete cds Length = 8916 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 72 cgccgtcgcctatgccgccgccg 94 ||||||||||| ||||||||||| Sbjct: 18 cgccgtcgcctctgccgccgccg 40
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 tcaggaagccgccgtcgcc 81 ||||||||||||||||||| Sbjct: 5021132 tcaggaagccgccgtcgcc 5021150
>ref|NM_020901.1| Homo sapiens CTD-binding SR-like protein rA9 (KIAA1542), mRNA Length = 5521 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 32 gccgccgccgcctctgccgccgccgtg 6
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 72 cgccgtcgcctatgccgccgccg 94 ||||||||||| ||||||||||| Sbjct: 16810130 cgccgtcgcctttgccgccgccg 16810108
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 gccgtcgcctatgccgccg 91 ||||||||||||||||||| Sbjct: 434170 gccgtcgcctatgccgccg 434188
>gb|AC138374.2| Homo sapiens chromosome 11, clone CTD-2647G13, complete sequence Length = 196424 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 92464 gccgccgccgcctctgccgccgccgtg 92438
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 74 ccgtcgcctatgccgccgccgtg 96 |||||||||||||||| |||||| Sbjct: 4993919 ccgtcgcctatgccgcggccgtg 4993941
>emb|AJ340965.1|HSA340965 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PA9RS Length = 695 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 93 gccgccgccgcctctgccgccgccgtg 119
>emb|AJ341367.1|HSA341367 Homo sapiens genomic sequence surrounding NotI site, clone NR5-KJ14RS Length = 767 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 93 gccgccgccgcctctgccgccgccgtg 119
>emb|AJ340652.1|HSA340652 Homo sapiens genomic sequence surrounding NotI site, clone NR5-HG20RS Length = 836 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 93 gccgccgccgcctctgccgccgccgtg 119
>emb|AJ339702.1|HSA339702 Homo sapiens genomic sequence surrounding NotI site, clone NR5-CI24RS Length = 737 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 93 gccgccgccgcctctgccgccgccgtg 119
>emb|AJ329533.1|HSA329533 Homo sapiens genomic sequence surrounding NotI site, clone NR5-IK11RS Length = 689 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 93 gccgccgccgcctctgccgccgccgtg 119
>gb|AF136167.1|AF136167 Streptomyces coelicolor AbsR1 (absR1) and AbsR2 (absR2) genes, complete cds Length = 3919 Score = 38.2 bits (19), Expect = 8.9 Identities = 28/31 (90%) Strand = Plus / Plus Query: 64 caggaagccgccgtcgcctatgccgccgccg 94 ||||| ||||||||||||| |||||||||| Sbjct: 3025 caggaggccgccgtcgcctgggccgccgccg 3055
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 tcaggaagccgccgtcgcc 81 ||||||||||||||||||| Sbjct: 24865 tcaggaagccgccgtcgcc 24883
>emb|CT571248.10| Mouse DNA sequence from clone RP24-355C16 on chromosome 16, complete sequence Length = 136128 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 163 aaccagggcttcccagcca 181 ||||||||||||||||||| Sbjct: 117562 aaccagggcttcccagcca 117580
>dbj|AP006284.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-496I9, complete sequence Length = 104658 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 35234 gccgccgccgcctctgccgccgccgtg 35208
>emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 on chromosome 7, complete sequence Length = 169471 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 160 cagaaccagggcttcccag 178 ||||||||||||||||||| Sbjct: 164572 cagaaccagggcttcccag 164554
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 72 cgccgtcgcctatgccgccgccg 94 ||||||||||| ||||||||||| Sbjct: 16819170 cgccgtcgcctttgccgccgccg 16819148
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 38.2 bits (19), Expect = 8.9 Identities = 28/31 (90%) Strand = Plus / Plus Query: 64 caggaagccgccgtcgcctatgccgccgccg 94 ||||| ||||||||||||| |||||||||| Sbjct: 3640 caggaggccgccgtcgcctgggccgccgccg 3670
>dbj|AB040975.1| Homo sapiens mRNA for KIAA1542 protein, partial cds Length = 5521 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 70 gccgccgtcgcctatgccgccgccgtg 96 ||||||| ||||| ||||||||||||| Sbjct: 32 gccgccgccgcctctgccgccgccgtg 6 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,471,399 Number of Sequences: 3902068 Number of extensions: 1471399 Number of successful extensions: 204891 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 203995 Number of HSP's gapped (non-prelim): 896 length of query: 181 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 159 effective length of database: 17,147,199,772 effective search space: 2726404763748 effective search space used: 2726404763748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)