ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags35h21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191387.1| Oryza sativa (japonica cultivar-group), predic... 92 2e-15
2gb|AY224570.1| Oryza sativa (japonica cultivar-group) isolate 29... 92 2e-15
3dbj|AB110205.1| Oryza sativa (japonica cultivar-group) mRNA for ... 92 2e-15
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
6dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
7gb|AC110257.12| Mus musculus chromosome 3, clone RP23-276I11, co... 42 1.7
8gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 6.5
9gb|AC003999.2| Homo sapiens PAC clone RP5-1139P1 from 7, complet... 40 6.5
10gb|AC124567.4| Mus musculus BAC clone RP23-145E22 from 6, comple... 40 6.5
11gb|AC144613.1| Pan troglodytes BAC clone RP43-1F6 from 7, comple... 40 6.5
12gb|AC141109.13| Medicago truncatula clone mth2-16p3, complete se... 40 6.5
13emb|AL160410.24| Human DNA sequence from clone RP11-136B8 on chr... 40 6.5
14emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on ch... 40 6.5
15emb|AL137403.1|HSM802098 Homo sapiens genomic DNA; cDNA DKFZp434... 40 6.5
16gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, c... 40 6.5
17gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, com... 40 6.5
18ref|NM_001019436.1| Schizosaccharomyces pombe 972h- hypothetical... 40 6.5
19gb|AC098691.2| Homo sapiens chromosome 1 clone RP11-509K22, comp... 40 6.5
20dbj|AB084885.1| Schizosaccharomyces pombe multiplex transcript R... 40 6.5
21dbj|AB084884.1| Schizosaccharomyces pombe multiplex transcript R... 40 6.5
22dbj|AB084883.1| Schizosaccharomyces pombe multiplex transcript R... 40 6.5
23dbj|AB084881.1| Schizosaccharomyces pombe mRNA for eta2, complet... 40 6.5
24emb|Z98979.1|SPAC31G5 S.pombe chromosome I cosmid c31G5 40 6.5
25dbj|D31735.1|YSPSPK1 Yeast spk1+ gene for protein kinase and ORF 40 6.5 
>ref|NM_191387.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2964

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                        
Query: 190  cagtctcaacaccagtatcttgggttcgaaaatgcgctcaggtgatattcaaacgctctc 249
            |||||||||||||  | ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 2339 cagtctcaacaccgatttcttgggttcgaaaatgtgctcaggtgatattcaaacggtctc 2398

                      
Query: 250  ctgagaagag 259
            | ||||||||
Sbjct: 2399 cagagaagag 2408



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaattcagcaacttgacgtgttgaaagaaccgaaagttgattctcagaacaagcaactgt 60
            ||||||| |||||| | |||||| |||||| |||| |||||||| | || ||||||||||
Sbjct: 2162 aaattcaacaacttaatgtgttggaagaactgaaaattgattctgaaaataagcaactgt 2221

                 
Query: 61   ctttg 65
            |||||
Sbjct: 2222 ctttg 2226
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>gb|AY224570.1| Oryza sativa (japonica cultivar-group) isolate 29956 nuclear matrix
           constituent-like protein mRNA, partial cds
          Length = 1121

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                       
Query: 190 cagtctcaacaccagtatcttgggttcgaaaatgcgctcaggtgatattcaaacgctctc 249
           |||||||||||||  | ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 788 cagtctcaacaccgatttcttgggttcgaaaatgtgctcaggtgatattcaaacggtctc 847

                     
Query: 250 ctgagaagag 259
           | ||||||||
Sbjct: 848 cagagaagag 857



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattcagcaacttgacgtgttgaaagaaccgaaagttgattctcagaacaagcaactgt 60
           ||||||| |||||| | |||||| |||||| |||| |||||||| | || ||||||||||
Sbjct: 611 aaattcaacaacttaatgtgttggaagaactgaaaattgattctgaaaataagcaactgt 670

                
Query: 61  ctttg 65
           |||||
Sbjct: 671 ctttg 675
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>dbj|AB110205.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein,
            complete cds, clone: pBSK-OsNMCP1bEN31
          Length = 2986

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                        
Query: 190  cagtctcaacaccagtatcttgggttcgaaaatgcgctcaggtgatattcaaacgctctc 249
            |||||||||||||  | ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 2350 cagtctcaacaccgatttcttgggttcgaaaatgtgctcaggtgatattcaaacggtctc 2409

                      
Query: 250  ctgagaagag 259
            | ||||||||
Sbjct: 2410 cagagaagag 2419



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaattcagcaacttgacgtgttgaaagaaccgaaagttgattctcagaacaagcaactgt 60
            ||||||| |||||| | |||||| |||||| |||| |||||||| | || ||||||||||
Sbjct: 2173 aaattcaacaacttaatgtgttggaagaactgaaaattgattctgaaaataagcaactgt 2232

                 
Query: 61   ctttg 65
            |||||
Sbjct: 2233 ctttg 2237
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                            
Query: 190      cagtctcaacaccagtatcttgggttcgaaaatgcgctcaggtgatattcaaacgctctc 249
                |||||||||||||  | ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 32322257 cagtctcaacaccgatttcttgggttcgaaaatgtgctcaggtgatattcaaacggtctc 32322198

                          
Query: 250      ctgagaagag 259
                | ||||||||
Sbjct: 32322197 cagagaagag 32322188



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1        aaattcagcaacttgacgtgttgaaagaaccgaaagttgattctcagaacaagcaactgt 60
                ||||||| |||||| | |||||| |||||| |||| |||||||| | || ||||||||||
Sbjct: 32322434 aaattcaacaacttaatgtgttggaagaactgaaaattgattctgaaaataagcaactgt 32322375

                     
Query: 61       ctttg 65
                |||||
Sbjct: 32322374 ctttg 32322370
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1143G03
          Length = 137770

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                        
Query: 190  cagtctcaacaccagtatcttgggttcgaaaatgcgctcaggtgatattcaaacgctctc 249
            |||||||||||||  | ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1754 cagtctcaacaccgatttcttgggttcgaaaatgtgctcaggtgatattcaaacggtctc 1695

                      
Query: 250  ctgagaagag 259
            | ||||||||
Sbjct: 1694 cagagaagag 1685



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaattcagcaacttgacgtgttgaaagaaccgaaagttgattctcagaacaagcaactgt 60
            ||||||| |||||| | |||||| |||||| |||| |||||||| | || ||||||||||
Sbjct: 1931 aaattcaacaacttaatgtgttggaagaactgaaaattgattctgaaaataagcaactgt 1872

                 
Query: 61   ctttg 65
            |||||
Sbjct: 1871 ctttg 1867
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>dbj|AP003377.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0053G03
          Length = 101901

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                         
Query: 190   cagtctcaacaccagtatcttgggttcgaaaatgcgctcaggtgatattcaaacgctctc 249
             |||||||||||||  | ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 54542 cagtctcaacaccgatttcttgggttcgaaaatgtgctcaggtgatattcaaacggtctc 54483

                       
Query: 250   ctgagaagag 259
             | ||||||||
Sbjct: 54482 cagagaagag 54473



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     aaattcagcaacttgacgtgttgaaagaaccgaaagttgattctcagaacaagcaactgt 60
             ||||||| |||||| | |||||| |||||| |||| |||||||| | || ||||||||||
Sbjct: 54719 aaattcaacaacttaatgtgttggaagaactgaaaattgattctgaaaataagcaactgt 54660

                  
Query: 61    ctttg 65
             |||||
Sbjct: 54659 ctttg 54655
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>gb|AC110257.12| Mus musculus chromosome 3, clone RP23-276I11, complete sequence
          Length = 178635

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 236   attcaaacgctctcctgagaagagttctg 264
             |||||| | ||||||||||||||||||||
Sbjct: 79118 attcaatccctctcctgagaagagttctg 79146
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 58      tgtctttgatagagtctgaaaagt 81
               ||||||||||||||| ||||||||
Sbjct: 2974325 tgtctttgatagagtatgaaaagt 2974302
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>gb|AC003999.2| Homo sapiens PAC clone RP5-1139P1 from 7, complete sequence
          Length = 133457

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    ataattcaactcctaagaat 143
              ||||||||||||||||||||
Sbjct: 129648 ataattcaactcctaagaat 129667
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>gb|AC124567.4| Mus musculus BAC clone RP23-145E22 from 6, complete sequence
          Length = 218924

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   tcttcagaactgtgtaccaa 303
             ||||||||||||||||||||
Sbjct: 52260 tcttcagaactgtgtaccaa 52241
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>gb|AC144613.1| Pan troglodytes BAC clone RP43-1F6 from 7, complete sequence
          Length = 177443

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    ataattcaactcctaagaat 143
              ||||||||||||||||||||
Sbjct: 129140 ataattcaactcctaagaat 129121
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>gb|AC141109.13| Medicago truncatula clone mth2-16p3, complete sequence
          Length = 116180

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 428   tgatccaagtgaagtttttgtaga 451
             ||||| ||||||||||||||||||
Sbjct: 48762 tgatctaagtgaagtttttgtaga 48739
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>emb|AL160410.24| Human DNA sequence from clone RP11-136B8 on chromosome 20 Contains ESs,
             STSs and GSSs, complete sequence
          Length = 63090

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ttcataattcaactcctaag 140
             ||||||||||||||||||||
Sbjct: 36709 ttcataattcaactcctaag 36728
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>emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on chromosome Xp11.21-11.23,
             complete sequence
          Length = 125999

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   tagtaagaaaaggaattatt 417
             ||||||||||||||||||||
Sbjct: 23117 tagtaagaaaaggaattatt 23098
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>emb|AL137403.1|HSM802098 Homo sapiens genomic DNA; cDNA DKFZp434L092 (from clone DKFZp434L092)
          Length = 2979

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   agatgaattatactgtcctc 104
            ||||||||||||||||||||
Sbjct: 1959 agatgaattatactgtcctc 1978
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>gb|AC107871.10| Homo sapiens chromosome 15, clone RP11-315D16, complete sequence
          Length = 171605

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    agatgaattatactgtcctc 104
             ||||||||||||||||||||
Sbjct: 84039 agatgaattatactgtcctc 84020
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>gb|AC067837.6| Homo sapiens chromosome 15, clone RP11-65B16, complete sequence
          Length = 173919

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     agatgaattatactgtcctc 104
              ||||||||||||||||||||
Sbjct: 141263 agatgaattatactgtcctc 141282
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>ref|NM_001019436.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC31G5.10),
           partial mRNA
          Length = 1710

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 402 aagaaaaggaattattcgtt 421
           ||||||||||||||||||||
Sbjct: 921 aagaaaaggaattattcgtt 940
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>gb|AC098691.2| Homo sapiens chromosome 1 clone RP11-509K22, complete sequence
          Length = 166885

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 66     atagagtctgaaaagtcgaagatg 89
              ||||||||||||||||| ||||||
Sbjct: 135439 atagagtctgaaaagtccaagatg 135416
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>dbj|AB084885.1| Schizosaccharomyces pombe multiplex transcript RNA, clone:plx6
          Length = 783

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 aagaaaaggaattattcgtt 421
           ||||||||||||||||||||
Sbjct: 782 aagaaaaggaattattcgtt 763
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>dbj|AB084884.1| Schizosaccharomyces pombe multiplex transcript RNA, clone:plx5
          Length = 422

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 aagaaaaggaattattcgtt 421
           ||||||||||||||||||||
Sbjct: 279 aagaaaaggaattattcgtt 260
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>dbj|AB084883.1| Schizosaccharomyces pombe multiplex transcript RNA, clone:plx4
          Length = 1279

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 aagaaaaggaattattcgtt 421
           ||||||||||||||||||||
Sbjct: 127 aagaaaaggaattattcgtt 108
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>dbj|AB084881.1| Schizosaccharomyces pombe mRNA for eta2, complete cds
          Length = 2554

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 402  aagaaaaggaattattcgtt 421
            ||||||||||||||||||||
Sbjct: 988  aagaaaaggaattattcgtt 1007
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>emb|Z98979.1|SPAC31G5 S.pombe chromosome I cosmid c31G5
          Length = 39729

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   aagaaaaggaattattcgtt 421
             ||||||||||||||||||||
Sbjct: 13207 aagaaaaggaattattcgtt 13226
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>dbj|D31735.1|YSPSPK1 Yeast spk1+ gene for protein kinase and ORF
          Length = 5427

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  aagaaaaggaattattcgtt 421
            ||||||||||||||||||||
Sbjct: 1291 aagaaaaggaattattcgtt 1272


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,728,341
Number of Sequences: 3902068
Number of extensions: 4728341
Number of successful extensions: 81255
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81164
Number of HSP's gapped (non-prelim): 91
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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