| Clone Name | bags35g14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474856.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4638 Score = 389 bits (196), Expect = e-105 Identities = 332/376 (88%), Gaps = 1/376 (0%) Strand = Plus / Plus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||| |||||| ||||||||||||||| |||| ||||| | ||| |||||||| | Sbjct: 3927 ggttaggta-ccgaccgaatacacctctaattttgaaaggcataactgtaagcattagtg 3985 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 3986 gtggtgaaaagataggagttgttggaagaacaggcagtggaaaatcaactttgatccaag 4045 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtagacctat 180 || ||||||| |||||||| |||| |||||| |||||||||||||| ||||| ||| Sbjct: 4046 cattgttcagacttgtagagcctgtgcaggggacaatgatcattgatggaatagacatat 4105 Query: 181 gtgcattgggtctgcatgatcttaggtcccgtttcggcataattccccaggagccagttc 240 | ||||||||||||||||||| |||||||| || ||||| |||||||| || ||||||| Sbjct: 4106 gcacattgggtctgcatgatctgaggtcccgctttggcattattccccaagaaccagttc 4165 Query: 241 tctttgaagggacgattcgaagtaacattgatccagttgggcagtattcagatgctcaaa 300 |||||||||| || |||||||| |||||||||||| |||||||||||||||||||| | | Sbjct: 4166 tctttgaaggaacaattcgaagcaacattgatccaattgggcagtattcagatgctgaga 4225 Query: 301 tatggcaggctctggagcgttgccaactgaaagatgtagtggcttcaaaagctgaaaagc 360 |||||| |||||||||| | |||||||||||||||||||| ||||||||| || |||| | Sbjct: 4226 tatggcgggctctggagggctgccaactgaaagatgtagttgcttcaaaacctcaaaaac 4285 Query: 361 tcgatgctctagtggc 376 | |||||||||||||| Sbjct: 4286 ttgatgctctagtggc 4301
>dbj|AK100406.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087C13, full insert sequence Length = 4081 Score = 389 bits (196), Expect = e-105 Identities = 332/376 (88%), Gaps = 1/376 (0%) Strand = Plus / Plus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||| |||||| ||||||||||||||| |||| ||||| | ||| |||||||| | Sbjct: 3127 ggttaggta-ccgaccgaatacacctctaattttgaaaggcataactgtaagcattagtg 3185 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 3186 gtggtgaaaagataggagttgttggaagaacaggcagtggaaaatcaactttgatccaag 3245 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtagacctat 180 || ||||||| |||||||| |||| |||||| |||||||||||||| ||||| ||| Sbjct: 3246 cattgttcagacttgtagagcctgtgcaggggacaatgatcattgatggaatagacatat 3305 Query: 181 gtgcattgggtctgcatgatcttaggtcccgtttcggcataattccccaggagccagttc 240 | ||||||||||||||||||| |||||||| || ||||| |||||||| || ||||||| Sbjct: 3306 gcacattgggtctgcatgatctaaggtcccgctttggcattattccccaagaaccagttc 3365 Query: 241 tctttgaagggacgattcgaagtaacattgatccagttgggcagtattcagatgctcaaa 300 |||||||||| || |||||||| |||||||||||| |||||||||||||||||||| | | Sbjct: 3366 tctttgaaggaacaattcgaagcaacattgatccaattgggcagtattcagatgctgaga 3425 Query: 301 tatggcaggctctggagcgttgccaactgaaagatgtagtggcttcaaaagctgaaaagc 360 |||||| |||||||||| | |||||||||||||||||||| ||||||||| || |||| | Sbjct: 3426 tatggcgggctctggagggctgccaactgaaagatgtagttgcttcaaaacctcaaaaac 3485 Query: 361 tcgatgctctagtggc 376 | |||||||||||||| Sbjct: 3486 ttgatgctctagtggc 3501
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 313 bits (158), Expect = 2e-82 Identities = 270/306 (88%), Gaps = 1/306 (0%) Strand = Plus / Minus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||| |||||| ||||||||||||||| |||| ||||| | ||| |||||||| | Sbjct: 7265394 ggttaggta-ccgaccgaatacacctctaattttgaaaggcataactgtaagcattagtg 7265336 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 7265335 gtggtgaaaagataggagttgttggaagaacaggcagtggaaaatcaactttgatccaag 7265276 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtagacctat 180 || ||||||| |||||||| |||| |||||| |||||||||||||| ||||| ||| Sbjct: 7265275 cattgttcagacttgtagagcctgtgcaggggacaatgatcattgatggaatagacatat 7265216 Query: 181 gtgcattgggtctgcatgatcttaggtcccgtttcggcataattccccaggagccagttc 240 | ||||||||||||||||||| |||||||| || ||||| |||||||| || ||||||| Sbjct: 7265215 gcacattgggtctgcatgatctgaggtcccgctttggcattattccccaagaaccagttc 7265156 Query: 241 tctttgaagggacgattcgaagtaacattgatccagttgggcagtattcagatgctcaaa 300 |||||||||| || |||||||| |||||||||||| |||||||||||||||||||| | | Sbjct: 7265155 tctttgaaggaacaattcgaagcaacattgatccaattgggcagtattcagatgctgaga 7265096 Query: 301 tatggc 306 |||||| Sbjct: 7265095 tatggc 7265090 Score = 93.7 bits (47), Expect = 4e-16 Identities = 144/175 (82%), Gaps = 1/175 (0%) Strand = Plus / Minus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||||| || |||| ||||||||||| |||||||||||| | | ||||||| Sbjct: 7280548 ggttaggtatc-gatcaaacacacctctaatcttgaagggcattactattagcattaaca 7280490 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 | || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||| | Sbjct: 7280489 gcggagaaaagataggagttgtgggaaggactggcagcggaaagtcaactttagttcagg 7280430 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtaga 175 | ||||||||||||| || |||| ||| ||| | || ||| ||||||| ||||| Sbjct: 7280429 ctttgttcaggcttgtggagcctgtagaagggcatatcatcgttgatggagtaga 7280375 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 305 gcaggctctggagcgttgccaactgaaagatgtagtggcttcaaaagctgaaaagctcga 364 ||||||||||||| | |||||||||||||||||||| ||||||||| || |||| || || Sbjct: 7264986 gcaggctctggagggctgccaactgaaagatgtagttgcttcaaaacctcaaaaacttga 7264927 Query: 365 tgctctag 372 |||||||| Sbjct: 7264926 tgctctag 7264919 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 79 ttgtaggaaggacaggcagtggaaaatcaactttgattcaagcact 124 |||||||| |||| || || ||||| |||||||||||||||||||| Sbjct: 29721914 ttgtaggacggactggaagcggaaagtcaactttgattcaagcact 29721959
>emb|AJ535073.1|OSA535073 Oryza sativa (japonica cultivar-group) mrp9 gene for MRP-like ABC transporter, exons 1-11 Length = 11279 Score = 313 bits (158), Expect = 2e-82 Identities = 270/306 (88%), Gaps = 1/306 (0%) Strand = Plus / Plus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||| |||||| ||||||||||||||| |||| ||||| | ||| |||||||| | Sbjct: 9629 ggttaggta-ccgaccgaatacacctctaattttgaaaggcataactgtaagcattagtg 9687 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 9688 gtggtgaaaagataggagttgttggaagaacaggcagtggaaaatcaactttgatccaag 9747 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtagacctat 180 || ||||||| |||||||| |||| |||||| |||||||||||||| ||||| ||| Sbjct: 9748 cattgttcagacttgtagagcctgtgcaggggacaatgatcattgatggaatagacatat 9807 Query: 181 gtgcattgggtctgcatgatcttaggtcccgtttcggcataattccccaggagccagttc 240 | ||||||||||||||||||| |||||||| || ||||| |||||||| || ||||||| Sbjct: 9808 gcacattgggtctgcatgatctgaggtcccgctttggcattattccccaagaaccagttc 9867 Query: 241 tctttgaagggacgattcgaagtaacattgatccagttgggcagtattcagatgctcaaa 300 |||||||||| || |||||||| |||||||||||| |||||||||||||||||||| | | Sbjct: 9868 tctttgaaggaacaattcgaagcaacattgatccaattgggcagtattcagatgctgaga 9927 Query: 301 tatggc 306 |||||| Sbjct: 9928 tatggc 9933 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 305 gcaggctctggagcgttgccaactgaaagatgtagtggcttcaaaagctgaaaagctcga 364 ||||||||||||| | |||||||||||||||||||| ||||||||| || |||| || || Sbjct: 10037 gcaggctctggagggctgccaactgaaagatgtagttgcttcaaaacctcaaaaacttga 10096 Query: 365 tgctctag 372 |||||||| Sbjct: 10097 tgctctag 10104
>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13, complete sequence Length = 143298 Score = 313 bits (158), Expect = 2e-82 Identities = 270/306 (88%), Gaps = 1/306 (0%) Strand = Plus / Minus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||| |||||| ||||||||||||||| |||| ||||| | ||| |||||||| | Sbjct: 129131 ggttaggta-ccgaccgaatacacctctaattttgaaaggcataactgtaagcattagtg 129073 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct: 129072 gtggtgaaaagataggagttgttggaagaacaggcagtggaaaatcaactttgatccaag 129013 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtagacctat 180 || ||||||| |||||||| |||| |||||| |||||||||||||| ||||| ||| Sbjct: 129012 cattgttcagacttgtagagcctgtgcaggggacaatgatcattgatggaatagacatat 128953 Query: 181 gtgcattgggtctgcatgatcttaggtcccgtttcggcataattccccaggagccagttc 240 | ||||||||||||||||||| |||||||| || ||||| |||||||| || ||||||| Sbjct: 128952 gcacattgggtctgcatgatctgaggtcccgctttggcattattccccaagaaccagttc 128893 Query: 241 tctttgaagggacgattcgaagtaacattgatccagttgggcagtattcagatgctcaaa 300 |||||||||| || |||||||| |||||||||||| |||||||||||||||||||| | | Sbjct: 128892 tctttgaaggaacaattcgaagcaacattgatccaattgggcagtattcagatgctgaga 128833 Query: 301 tatggc 306 |||||| Sbjct: 128832 tatggc 128827 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 305 gcaggctctggagcgttgccaactgaaagatgtagtggcttcaaaagctgaaaagctcga 364 ||||||||||||| | |||||||||||||||||||| ||||||||| || |||| || || Sbjct: 128723 gcaggctctggagggctgccaactgaaagatgtagttgcttcaaaacctcaaaaacttga 128664 Query: 365 tgctctag 372 |||||||| Sbjct: 128663 tgctctag 128656
>ref|XM_474857.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4539 Score = 99.6 bits (50), Expect = 6e-18 Identities = 276/350 (78%), Gaps = 1/350 (0%) Strand = Plus / Plus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||||| || |||| ||||||||||| |||||||||||| | | ||||||| Sbjct: 3816 ggttaggtatc-gatcaaacacacctctaatcttgaagggcattactattagcattaaca 3874 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 | || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||| | Sbjct: 3875 gcggagaaaagataggagttgtgggaaggactggcagcggaaagtcaactttagttcagg 3934 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtagacctat 180 | ||||||||||||| || |||| ||| ||| | || ||| ||||||| ||||| | Sbjct: 3935 ctttgttcaggcttgtggagcctgtagaagggcatatcatcgttgatggagtagatattg 3994 Query: 181 gtgcattgggtctgcatgatcttaggtcccgtttcggcataattccccaggagccagttc 240 | | ||||| || |||||||| ||||| || || || | ||||| || ||||| || | Sbjct: 3995 gcactttgggccttcatgatctcaggtcgcgctttggtgtgattcctcaagagcctgtgc 4054 Query: 241 tctttgaagggacgattcgaagtaacattgatccagttgggcagtattcagatgctcaaa 300 |||||||||| || || |||| ||||| || ||| |||||| ||||| || | | | Sbjct: 4055 tctttgaaggaaccataagaagcaacatcgacccaattgggcgatattctgaggacgaga 4114 Query: 301 tatggcaggctctggagcgttgccaactgaaagatgtagtggcttcaaaa 350 |||||||||| || |||||||| ||||| |||||| |||| ||| ||||| Sbjct: 4115 tatggcaggcccttgagcgttgtcaactaaaagatatagtagctacaaaa 4164
>dbj|AK120122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026A05, full insert sequence Length = 4968 Score = 99.6 bits (50), Expect = 6e-18 Identities = 276/350 (78%), Gaps = 1/350 (0%) Strand = Plus / Plus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||||| || |||| ||||||||||| |||||||||||| | | ||||||| Sbjct: 3933 ggttaggtatc-gatcaaacacacctctaatcttgaagggcattactattagcattaaca 3991 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 | || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||| | Sbjct: 3992 gcggagaaaagataggagttgtgggaaggactggcagcggaaagtcaactttagttcagg 4051 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtagacctat 180 | ||||||||||||| || |||| ||| ||| | || ||| ||||||| ||||| | Sbjct: 4052 ctttgttcaggcttgtggagcctgtagaagggcatatcatcgttgatggagtagatattg 4111 Query: 181 gtgcattgggtctgcatgatcttaggtcccgtttcggcataattccccaggagccagttc 240 | | ||||| || |||||||| ||||| || || || | ||||| || ||||| || | Sbjct: 4112 gcactttgggccttcatgatctcaggtcgcgctttggtgtgattcctcaagagcctgtgc 4171 Query: 241 tctttgaagggacgattcgaagtaacattgatccagttgggcagtattcagatgctcaaa 300 |||||||||| || || |||| ||||| || ||| |||||| ||||| || | | | Sbjct: 4172 tctttgaaggaaccataagaagcaacatcgacccaattgggcgatattctgaggacgaga 4231 Query: 301 tatggcaggctctggagcgttgccaactgaaagatgtagtggcttcaaaa 350 |||||||||| || |||||||| ||||| |||||| |||| ||| ||||| Sbjct: 4232 tatggcaggcccttgagcgttgtcaactaaaagatatagtagctacaaaa 4281
>emb|AL663001.3|OSJN00197 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022P19, complete sequence Length = 135836 Score = 93.7 bits (47), Expect = 4e-16 Identities = 144/175 (82%), Gaps = 1/175 (0%) Strand = Plus / Minus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||||| || |||| ||||||||||| |||||||||||| | | ||||||| Sbjct: 7918 ggttaggtatc-gatcaaacacacctctaatcttgaagggcattactattagcattaaca 7860 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 | || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||| | Sbjct: 7859 gcggagaaaagataggagttgtgggaaggactggcagcggaaagtcaactttagttcagg 7800 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtaga 175 | ||||||||||||| || |||| ||| ||| | || ||| ||||||| ||||| Sbjct: 7799 ctttgttcaggcttgtggagcctgtagaagggcatatcatcgttgatggagtaga 7745
>emb|AJ535072.1|OSA535072 Oryza sativa (japonica cultivar-group) mrp10 gene for MRP-like ABC transporter, exons 1-11 Length = 8122 Score = 93.7 bits (47), Expect = 4e-16 Identities = 144/175 (82%), Gaps = 1/175 (0%) Strand = Plus / Plus Query: 1 ggttaggtatccgaccaaatacacctctaattctgaagggcattaatgtgagcattagag 60 ||||||||||| || |||| ||||||||||| |||||||||||| | | ||||||| Sbjct: 7052 ggttaggtatc-gatcaaacacacctctaatcttgaagggcattactattagcattaaca 7110 Query: 61 gtggtgaaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaag 120 | || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||| | Sbjct: 7111 gcggagaaaagataggagttgtgggaaggactggcagcggaaagtcaactttagttcagg 7170 Query: 121 cactgttcaggcttgtagaacctgcagaggggaagatgatcattgatggggtaga 175 | ||||||||||||| || |||| ||| ||| | || ||| ||||||| ||||| Sbjct: 7171 ctttgttcaggcttgtggagcctgtagaagggcatatcatcgttgatggagtaga 7225
>ref|NM_193977.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4446 Score = 81.8 bits (41), Expect = 1e-12 Identities = 140/173 (80%) Strand = Plus / Plus Query: 195 catgatcttaggtcccgtttcggcataattccccaggagccagttctctttgaagggacg 254 |||||||| ||||| || |||||||| || || |||||||| || ||||| ||||||||| Sbjct: 3928 catgatctgaggtctcggttcggcattatccctcaggagcctgtcctcttcgaagggacg 3987 Query: 255 attcgaagtaacattgatccagttgggcagtattcagatgctcaaatatggcaggctctg 314 |||||||| ||||| || || || || ||| || |||| | |||| |||||||| || Sbjct: 3988 attcgaagcaacatcgacccgcttcagctgtactctgatgatgaaatttggcaggccttg 4047 Query: 315 gagcgttgccaactgaaagatgtagtggcttcaaaagctgaaaagctcgatgc 367 || ||||| || |||||||||| |||| |||||||| | || ||||| ||||| Sbjct: 4048 gaacgttgtcagctgaaagatgcagtgacttcaaaacccgagaagcttgatgc 4100
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 195 catgatcttaggtcccgtttcggcataattccccaggagccagttctctttgaagggacg 254 |||||||| ||||| || |||||||| || || |||||||| || ||||| ||||||||| Sbjct: 14324462 catgatctgaggtctcggttcggcattatccctcaggagcctgtcctcttcgaagggacg 14324403 Query: 255 attcgaagtaacat 268 |||||||| ||||| Sbjct: 14324402 attcgaagcaacat 14324389
>dbj|AP003207.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1157F09 Length = 148802 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 195 catgatcttaggtcccgtttcggcataattccccaggagccagttctctttgaagggacg 254 |||||||| ||||| || |||||||| || || |||||||| || ||||| ||||||||| Sbjct: 75739 catgatctgaggtctcggttcggcattatccctcaggagcctgtcctcttcgaagggacg 75680 Query: 255 attcgaagtaacat 268 |||||||| ||||| Sbjct: 75679 attcgaagcaacat 75666
>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458A05 Length = 120593 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 195 catgatcttaggtcccgtttcggcataattccccaggagccagttctctttgaagggacg 254 |||||||| ||||| || |||||||| || || |||||||| || ||||| ||||||||| Sbjct: 120152 catgatctgaggtctcggttcggcattatccctcaggagcctgtcctcttcgaagggacg 120093 Query: 255 attcgaagtaacat 268 |||||||| ||||| Sbjct: 120092 attcgaagcaacat 120079
>emb|AJ535074.1|OSA535074 Oryza sativa (japonica cultivar-group) mrp8 gene for MRP-like ABC transporter, exons 1-11 Length = 16621 Score = 67.9 bits (34), Expect = 2e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 195 catgatcttaggtcccgtttcggcataattccccaggagccagttctctttgaagggacg 254 |||||||| ||||| || |||||||| || || |||||||| || ||||| ||||||||| Sbjct: 15662 catgatctgaggtctcggttcggcattatccctcaggagcctgtcctcttcgaagggacg 15721 Query: 255 attcgaagtaacat 268 |||||||| ||||| Sbjct: 15722 attcgaagcaacat 15735
>gb|AY107851.1| Zea mays PCO143234 mRNA sequence Length = 1449 Score = 63.9 bits (32), Expect = 3e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 195 catgatcttaggtcccgtttcggcataattccccaggagccagttctctttgaagggacg 254 ||||| |||||||| || || || || || || ||||| || ||||||||||||||||| Sbjct: 557 catgaccttaggtcacggtttggtatcatacctcaggaacctgttctctttgaagggacc 616 Query: 255 attcgaagtaacattgatccagttgggcagtattcagatgctcaaatatggcaggc 310 ||| | || ||||||||||| ||| ||||||||| |||| | |||| |||||||| Sbjct: 617 attaggagcaacattgatccgcttgagcagtattccgatgatgaaatctggcaggc 672
>ref|NM_115879.2| Arabidopsis thaliana ATMRP9 AT3G60160 (ATMRP9) mRNA, complete cds Length = 4499 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 67 aaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaagcactgt 126 ||||||| ||||| |||||||| ||||| || || ||||||||||| ||||| ||| ||| Sbjct: 3800 aaaagattggagtagtaggaagaacaggaagcggcaaatcaactttaattcaggcattgt 3859 Query: 127 tcaggcttgtaga 139 | ||| ||||||| Sbjct: 3860 ttaggattgtaga 3872
>ref|NM_115961.1| Arabidopsis thaliana ATMRP15 AT3G60970 (ATMRP15) mRNA, complete cds Length = 3114 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 67 aaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaagcactgt 126 ||||||| ||||| |||||||| ||||| || || ||||||||||| ||||| ||| ||| Sbjct: 2441 aaaagattggagtagtaggaagaacaggaagcggcaaatcaactttaattcaggcattgt 2500 Query: 127 tcaggcttgtaga 139 | ||| ||||||| Sbjct: 2501 ttaggattgtaga 2513
>emb|AL358732.1|ATT27I15 Arabidopsis thaliana DNA chromosome 3, BAC clone T27I15 Length = 112584 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 67 aaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaagcactgt 126 ||||||| ||||| |||||||| ||||| || || ||||||||||| ||||| ||| ||| Sbjct: 58447 aaaagattggagtagtaggaagaacaggaagcggcaaatcaactttaattcaggcattgt 58506 Query: 127 tcaggcttgtaga 139 | ||| ||||||| Sbjct: 58507 ttaggattgtaga 58519
>emb|AL138658.1|ATT2O9 Arabidopsis thaliana DNA chromosome 3, BAC clone T2O9 Length = 90823 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 67 aaaagataggagttgtaggaaggacaggcagtggaaaatcaactttgattcaagcactgt 126 ||||||| ||||| |||||||| ||||| || || ||||||||||| ||||| ||| ||| Sbjct: 62189 aaaagattggagtagtaggaagaacaggaagcggcaaatcaactttaattcaggcattgt 62130 Query: 127 tcaggcttgtaga 139 | ||| ||||||| Sbjct: 62129 ttaggattgtaga 62117
>ref|XM_473701.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3564 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 79 ttgtaggaaggacaggcagtggaaaatcaactttgattcaagcact 124 |||||||| |||| || || ||||| |||||||||||||||||||| Sbjct: 2927 ttgtaggacggactggaagcggaaagtcaactttgattcaagcact 2972
>emb|AL606658.5|OSJN00098 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016D16, complete sequence Length = 133113 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 79 ttgtaggaaggacaggcagtggaaaatcaactttgattcaagcact 124 |||||||| |||| || || ||||| |||||||||||||||||||| Sbjct: 109134 ttgtaggacggactggaagcggaaagtcaactttgattcaagcact 109179
>emb|AJ535076.1|OSA535076 Oryza sativa (japonica cultivar-group) mrp6 gene for MRP-like ABC transporter, exons 1-12 Length = 7120 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 79 ttgtaggaaggacaggcagtggaaaatcaactttgattcaagcact 124 |||||||| |||| || || ||||| |||||||||||||||||||| Sbjct: 5972 ttgtaggacggactggaagcggaaagtcaactttgattcaagcact 6017
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 79 ttgtaggaaggacaggcagtggaaaatcaactttgattcaagcact 124 |||||||| |||| || || ||||| |||||||||||||||||||| Sbjct: 2840 ttgtaggacggactggaagcggaaagtcaactttgattcaagcact 2885
>gb|AY186245.1| Zea mays multidrug resistance associated protein 1 (MRP1) mRNA, complete cds Length = 4434 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 69 aagataggagttgtaggaaggacaggcagtggaaaatcaac 109 ||||| || |||||||| |||||||| |||||||||||||| Sbjct: 3781 aagattggggttgtagggaggacaggaagtggaaaatcaac 3821
>gb|AY186244.1| Zea mays multidrug resistance associated protein 1 (MRP1) gene, complete cds Length = 6437 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 69 aagataggagttgtaggaaggacaggcagtggaaaatcaac 109 ||||| || |||||||| |||||||| |||||||||||||| Sbjct: 4984 aagattggggttgtagggaggacaggaagtggaaaatcaac 5024
>dbj|AB162907.1| Thlaspi caerulescens TcMRP3 mRNA for multidrug resistance-associated protein, complete cds Length = 4602 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 74 aggagttgtaggaaggacaggcagtggaaaatcaactttgattca 118 |||| |||||||||||||||| || || ||||| ||||||||||| Sbjct: 3912 aggaattgtaggaaggacaggaagcgggaaatcgactttgattca 3956
>gb|AY106986.1| Zea mays PCO120900 mRNA sequence Length = 1456 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 69 aagataggagttgtaggaaggacaggcagtggaaaatcaac 109 ||||| || |||||||| |||||||| |||||||||||||| Sbjct: 335 aagattggggttgtagggaggacaggaagtggaaaatcaac 375
>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence Length = 130355 Score = 48.1 bits (24), Expect = 0.021 Identities = 141/180 (78%) Strand = Plus / Plus Query: 96 agtggaaaatcaactttgattcaagcactgttcaggcttgtagaacctgcagaggggaag 155 ||||||||||| ||||||||||| | | |||||||| || |||||| | | ||||| Sbjct: 73600 agtggaaaatcgactttgattcaggttttcttcaggctggtggaacctactggagggaaa 73659 Query: 156 atgatcattgatggggtagacctatgtgcattgggtctgcatgatcttaggtcccgtttc 215 || ||||||||||| | ||| ||||||| || || || |||||||| || || || ||| Sbjct: 73660 ataatcattgatggcattgacatatgtgccttaggacttcatgatctcagatctcgattc 73719 Query: 216 ggcataattccccaggagccagttctctttgaagggacgattcgaagtaacattgatcca 275 || || || || |||||||| || || || ||||| || | ||||||||||||||||| Sbjct: 73720 ggtatcatccctcaggagcctgtccttttcgaaggaactgtcagaagtaacattgatcca 73779
>gb|AC123841.4| Mus musculus BAC clone RP23-400M7 from chromosome 13, complete sequence Length = 203062 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 aggggaagatgatcattgatgg 169 |||||||||||||||||||||| Sbjct: 37288 aggggaagatgatcattgatgg 37309
>gb|AC148607.16| Medicago truncatula clone mth2-43g15, complete sequence Length = 148291 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Plus Query: 93 ggcagtggaaaatcaactttgattcaagca 122 |||||||| ||||| ||||||||||||||| Sbjct: 4557 ggcagtggcaaatctactttgattcaagca 4586
>emb|AJ630345.1| Sus scrofa LTR-like region, clone SBAB_894D6, 5' end Length = 290 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 312 ctggagcgttgccaactgaaagatgt 337 |||||| ||||||||||||||||||| Sbjct: 210 ctggagagttgccaactgaaagatgt 235
>emb|BX005478.7| Zebrafish DNA sequence from clone CH211-77G9, complete sequence Length = 152152 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 36 aagggcattaatgtgagcatta 57 |||||||||||||||||||||| Sbjct: 85399 aagggcattaatgtgagcatta 85420
>emb|BX005015.5| Zebrafish DNA sequence from clone CH211-66I11 in linkage group 9, complete sequence Length = 172283 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 36 aagggcattaatgtgagcatta 57 |||||||||||||||||||||| Sbjct: 76645 aagggcattaatgtgagcatta 76624
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 98 tggaaaatcaactttgattcaa 119 |||||||||||||||||||||| Sbjct: 3253470 tggaaaatcaactttgattcaa 3253449
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence Length = 124602 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Plus Query: 75 ggagttgtaggaaggacaggcagtggaaaa 104 ||||||||||||||||| || ||||||||| Sbjct: 92610 ggagttgtaggaaggactggaagtggaaaa 92639
>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence Length = 118144 Score = 44.1 bits (22), Expect = 0.32 Identities = 46/54 (85%) Strand = Plus / Minus Query: 90 acaggcagtggaaaatcaactttgattcaagcactgttcaggcttgtagaacct 143 ||||| ||||| ||||||||||||||||| | ||||||| ||||| |||||| Sbjct: 54344 acaggaagtggtaaatcaactttgattcaggtcttgttcagacttgtggaacct 54291
>gb|AC122127.31| Mus musculus chromosome 1, clone RP24-401K1, complete sequence Length = 193324 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 226 cccaggagccagttctctttga 247 |||||||||||||||||||||| Sbjct: 120019 cccaggagccagttctctttga 120040
>ref|XM_323162.1| Neurospora crassa OR74A hypothetical protein (NCU10044.1) partial mRNA Length = 1413 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 gaagatgatcattgatggggt 172 ||||||||||||||||||||| Sbjct: 795 gaagatgatcattgatggggt 815
>ref|XM_952868.1| Neurospora crassa OR74A hypothetical protein (NCU10044.1) partial mRNA Length = 1413 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 gaagatgatcattgatggggt 172 ||||||||||||||||||||| Sbjct: 795 gaagatgatcattgatggggt 815
>ref|NM_130347.2| Arabidopsis thaliana ATMRP4 AT2G47800 (ATMRP4) mRNA, complete cds Length = 4745 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 124 tgttcaggcttgtagaacctgcagaggggaagatgatcat 163 ||||||||||||||||||| ||| |||||||| ||||| Sbjct: 3962 tgttcaggcttgtagaaccatcaggagggaagataatcat 4001
>gb|U41540.1| Caenorhabditis elegans cosmid F35H12, complete sequence Length = 27102 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 gtggaaaatcaactttgattcaag 120 |||||| ||||||||||||||||| Sbjct: 12771 gtggaatatcaactttgattcaag 12748
>gb|DQ100314.1| Uta stansburiana G protein beta 1 subunit mRNA, complete cds Length = 1020 Score = 40.1 bits (20), Expect = 5.0 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 264 aacattgatccagttgggcagtattcagatgc 295 ||||||||||||||||| | |||||||||||| Sbjct: 106 aacattgatccagttggtc-gtattcagatgc 136
>ref|XM_855446.1| PREDICTED: Canis familiaris similar to peroxisome biogenesis factor 1, transcript variant 3 (LOC475227), mRNA Length = 3962 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ggcagtggaaaatcaacttt 112 |||||||||||||||||||| Sbjct: 1680 ggcagtggaaaatcaacttt 1699
>ref|XM_855419.1| PREDICTED: Canis familiaris similar to peroxisome biogenesis factor 1, transcript variant 2 (LOC475227), mRNA Length = 3911 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ggcagtggaaaatcaacttt 112 |||||||||||||||||||| Sbjct: 1800 ggcagtggaaaatcaacttt 1819
>ref|XM_532459.2| PREDICTED: Canis familiaris similar to peroxisome biogenesis factor 1, transcript variant 1 (LOC475227), mRNA Length = 4082 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ggcagtggaaaatcaacttt 112 |||||||||||||||||||| Sbjct: 1800 ggcagtggaaaatcaacttt 1819
>ref|XM_647047.1| Entamoeba histolytica HM-1:IMSS ABC transporter (130.t00009) partial mRNA Length = 4086 Score = 40.1 bits (20), Expect = 5.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 66 gaaaagataggagttgtaggaaggacaggcagtggaaaatcaac 109 ||||| ||||| |||| ||||| ||||| |||||||||||||| Sbjct: 3175 gaaaaaataggtattgttggaagaacaggaagtggaaaatcaac 3218
>ref|XM_647064.1| Entamoeba histolytica HM-1:IMSS ABC transporter (130.t00006) partial mRNA Length = 4086 Score = 40.1 bits (20), Expect = 5.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 66 gaaaagataggagttgtaggaaggacaggcagtggaaaatcaac 109 ||||| ||||| |||| ||||| ||||| |||||||||||||| Sbjct: 3175 gaaaaaataggtattgttggaagaacaggaagtggaaaatcaac 3218
>ref|XM_947335.1| Theileria annulata strain Ankara ATP-dependent helicase (TA12360) partial mRNA Length = 2007 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 acaggcagtggaaaatcaac 109 |||||||||||||||||||| Sbjct: 91 acaggcagtggaaaatcaac 110
>gb|AC097361.2| Homo sapiens chromosome 3 clone RP11-722P17, complete sequence Length = 175036 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gagccagttctctttgaagg 250 |||||||||||||||||||| Sbjct: 9787 gagccagttctctttgaagg 9806
>gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence Length = 120464 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gaggggaagatgatcattga 166 |||||||||||||||||||| Sbjct: 4604 gaggggaagatgatcattga 4585
>emb|AL133215.17| Human DNA sequence from clone RP11-108L7 on chromosome 10 Contains the 3' end of the C10orf6 gene for chromosome 10 open reading frame 6, the SEMA4G gene for sema domain immunoglobulin domain (Ig) transmembrane domain (TM) and short cytoplasmic domain (semaphorin) 4G, the MRPL43 gene for mitochondrial ribosomal protein L43, the C10orf2 gene for chromosome 10 open reading frame 2, the gene for a novel protein (KIAA1813) (LAPSER1), a novel gene, the gene for a novel protein (FLJ23209 FLJ00011), the gene for a novel tricarboxylate carrier domain containing protein (FLJ34185 FLJ35692), the gene for a novel kazal-type serine protease inhibitor domain and immunoglobulin domain containing protein (FKSG28) (FKSG4), the 3' end of a novel gene and six CpG islands, complete sequence Length = 181086 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tgtgcattgggtctgcatga 199 |||||||||||||||||||| Sbjct: 146822 tgtgcattgggtctgcatga 146841
>emb|AJ002584.1|ATDNAMRP4 Arabidopsis thaliana DNA for the glutathione-conjugate transporter AtMRP4 Length = 6923 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 124 tgttcaggcttgtagaacctgcagaggggaagatgatcat 163 ||||||||||||||||||| ||| |||||||| ||||| Sbjct: 5674 tgttcaggcttgtagaaccatcaggagggaagataatcat 5713
>emb|AL662855.19| Mouse DNA sequence from clone RP23-388J21 on chromosome 11, complete sequence Length = 157088 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tccccaggagccagttctct 243 |||||||||||||||||||| Sbjct: 42172 tccccaggagccagttctct 42191
>gb|AC090638.11| Homo sapiens chromosome 18, clone RP11-429H5, complete sequence Length = 180429 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ttctgaagggcattaatgtg 50 |||||||||||||||||||| Sbjct: 135074 ttctgaagggcattaatgtg 135055
>gb|AC098970.2| Homo sapiens chromosome 3 clone RP11-30G4, complete sequence Length = 153590 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gagccagttctctttgaagg 250 |||||||||||||||||||| Sbjct: 133982 gagccagttctctttgaagg 134001
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 124 tgttcaggcttgtagaacctgcagaggggaagatgatcat 163 ||||||||||||||||||| ||| |||||||| ||||| Sbjct: 46954 tgttcaggcttgtagaaccatcaggagggaagataatcat 46993
>gb|AF243509.1|AF243509 Arabidopsis thaliana MRP4 mRNA, complete cds Length = 4696 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 124 tgttcaggcttgtagaacctgcagaggggaagatgatcat 163 ||||||||||||||||||| ||| |||||||| ||||| Sbjct: 3962 tgttcaggcttgtagaaccatcaggagggaagataatcat 4001
>gb|AC155950.2| Xenopus tropicalis clone CH216-103N11, complete sequence Length = 146670 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 agtattcagatgctcaaata 302 |||||||||||||||||||| Sbjct: 5565 agtattcagatgctcaaata 5584
>dbj|AK064493.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C07, full insert sequence Length = 1576 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 agtggcttcaaaagctgaaa 357 |||||||||||||||||||| Sbjct: 482 agtggcttcaaaagctgaaa 501
>gb|U96399.1|ATU96399 Arabidopsis thaliana MRP-like ABC transporter mRNA, partial cds Length = 736 Score = 40.1 bits (20), Expect = 5.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 124 tgttcaggcttgtagaacctgcagaggggaagatgatcat 163 ||||||||||||||||||| ||| |||||||| ||||| Sbjct: 149 tgttcaggcttgtagaaccatcaggagggaagataatcat 188 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,019,860 Number of Sequences: 3902068 Number of extensions: 3019860 Number of successful extensions: 55945 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 55798 Number of HSP's gapped (non-prelim): 142 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)