ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags35e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransf... 452 e-124
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 68 1e-08
4emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003... 68 1e-08
5emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 54 2e-04
6emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 54 2e-04
7emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chr... 44 0.19
8ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (... 40 3.0
9ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protei... 40 3.0
10emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, c... 40 3.0
11emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in ... 40 3.0
12gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Canc... 40 3.0
13gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D... 40 3.0
14emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in... 40 3.0
15gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome 40 3.0
16gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosom... 40 3.0

>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score =  452 bits (228), Expect = e-124
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    gatttcagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccggagtgga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2698 gatttcagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccggagtgga 2757

                                                                        
Query: 61   tgaggacgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacatctccat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 tgaggacgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacatctccat 2817

                                                                        
Query: 121  ggtgctcagagcagccatccagctgggcctcctagacgcactcagtgcggctggnggcaa 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2818 ggtgctcagagcagccatccagctgggcctcctagacgcactcagtgcggctggtggcaa 2877

                                                               
Query: 181  ggcgctgacccccaacgagctcgtagagaacgtggagacaagcagcaacaa 231
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2878 ggcgctgacccccaacgagctcgtagagaacgtggagacaagcagcaacaa 2928



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 86      gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 145
               ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 5171173 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171232

                             
Query: 146     ggcctcctagacgc 159
               |||||||| |||||
Sbjct: 5171233 ggcctcctcgacgc 5171246



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 86      gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagc 132
               |||||||| ||||||||||||||||||  ||||||||| || |||||
Sbjct: 5363496 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagc 5363542



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 86      gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 145
               ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 5171155 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171214

                             
Query: 146     ggcctcctagacgc 159
               |||||||| |||||
Sbjct: 5171215 ggcctcctcgacgc 5171228



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 86      gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagc 132
               |||||||| ||||||||||||||||||  ||||||||| || |||||
Sbjct: 5363485 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagc 5363531



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>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 86    gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 145
             ||||| |||||| |||| |||||||||  ||||||||||||  |||| || |||||||||
Sbjct: 92426 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 92367

                           
Query: 146   ggcctcctagacgc 159
             |||||||| |||||
Sbjct: 92366 ggcctcctcgacgc 92353



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>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 86    gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagc 132
             |||||||| ||||||||||||||||||  ||||||||| || |||||
Sbjct: 35563 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagc 35609



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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 141841

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                             
Query: 86     gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagc 132
              |||||||| ||||||||||||||||||  ||||||||| || |||||
Sbjct: 102312 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagc 102266



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>emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chromosome 9 Contains the
             STXBP1 gene for syntaxin binding protein 1
             (UNC18,hUNC18,MUNC18-1), two novel genes, a novel gene
             (LOC138428), the gene for a novel protien (LOC286207), the
             gene for anovel protein (FLJ32780), the TOR2A gene for
             torsin family 2, member A (FLJ14771), the 3' end of the
             SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3) and
             five CpG islands, complete sequence
          Length = 163338

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 71    aggctgtgcttccaagcgcaagagct 96
             ||||||||||||||||| ||||||||
Sbjct: 60628 aggctgtgcttccaagcccaagagct 60653



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>ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (LOC419963), mRNA
          Length = 5646

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 129  gagcagccatccagctgggc 148
            ||||||||||||||||||||
Sbjct: 1631 gagcagccatccagctgggc 1612



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>ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04330)
           partial mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  gtcgccggagtggatgagga 66
           ||||||||||||||||||||
Sbjct: 291 gtcgccggagtggatgagga 272



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>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence
          Length = 90800

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   catggtgctcagagcagcca 137
             ||||||||||||||||||||
Sbjct: 39007 catggtgctcagagcagcca 39026



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>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17,
              complete sequence
          Length = 170138

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     catgtttgcctacaacatct 116
              ||||||||||||||||||||
Sbjct: 133275 catgtttgcctacaacatct 133294



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>gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 113064

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   ctccatggtgctcagagcag 134
             ||||||||||||||||||||
Sbjct: 16033 ctccatggtgctcagagcag 16052



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>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
             sequence
          Length = 92652

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    catgtttgcctacaacatct 116
             ||||||||||||||||||||
Sbjct: 83981 catgtttgcctacaacatct 84000



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>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
              complete sequence
          Length = 178148

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    ctcagagcagccatccagct 144
              ||||||||||||||||||||
Sbjct: 173873 ctcagagcagccatccagct 173854



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>gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome
          Length = 7685

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  ggtgctcagagcagccatcc 140
            ||||||||||||||||||||
Sbjct: 2093 ggtgctcagagcagccatcc 2074



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>gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosome 9, complete sequence
          Length = 170491

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   ctccatggtgctcagagcag 134
             ||||||||||||||||||||
Sbjct: 67690 ctccatggtgctcagagcag 67709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,947,233
Number of Sequences: 3902068
Number of extensions: 1947233
Number of successful extensions: 32755
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32728
Number of HSP's gapped (non-prelim): 27
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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