| Clone Name | bags35e12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene, complete cds Length = 5238 Score = 452 bits (228), Expect = e-124 Identities = 230/231 (99%) Strand = Plus / Plus Query: 1 gatttcagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccggagtgga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2698 gatttcagcacctttctttagtggtacgagtcctgctgctgctagtgtcgccggagtgga 2757 Query: 61 tgaggacgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacatctccat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2758 tgaggacgataggctgtgcttccaagcgcaagagctcatgtttgcctacaacatctccat 2817 Query: 121 ggtgctcagagcagccatccagctgggcctcctagacgcactcagtgcggctggnggcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2818 ggtgctcagagcagccatccagctgggcctcctagacgcactcagtgcggctggtggcaa 2877 Query: 181 ggcgctgacccccaacgagctcgtagagaacgtggagacaagcagcaacaa 231 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2878 ggcgctgacccccaacgagctcgtagagaacgtggagacaagcagcaacaa 2928
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 86 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 145 ||||| |||||| |||| ||||||||| |||||||||||| |||| || ||||||||| Sbjct: 5171173 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171232 Query: 146 ggcctcctagacgc 159 |||||||| ||||| Sbjct: 5171233 ggcctcctcgacgc 5171246 Score = 54.0 bits (27), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 86 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagc 132 |||||||| |||||||||||||||||| ||||||||| || ||||| Sbjct: 5363496 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagc 5363542
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 86 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 145 ||||| |||||| |||| ||||||||| |||||||||||| |||| || ||||||||| Sbjct: 5171155 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 5171214 Query: 146 ggcctcctagacgc 159 |||||||| ||||| Sbjct: 5171215 ggcctcctcgacgc 5171228 Score = 54.0 bits (27), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 86 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagc 132 |||||||| |||||||||||||||||| ||||||||| || ||||| Sbjct: 5363485 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagc 5363531
>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124959 Score = 67.9 bits (34), Expect = 1e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 86 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagcagccatccagctg 145 ||||| |||||| |||| ||||||||| |||||||||||| |||| || ||||||||| Sbjct: 92426 gcgcaggagctcgtgttcgcctacaaccgctccatggtgctgcgagcggcgatccagctg 92367 Query: 146 ggcctcctagacgc 159 |||||||| ||||| Sbjct: 92366 ggcctcctcgacgc 92353
>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 105645 Score = 54.0 bits (27), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 86 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagc 132 |||||||| |||||||||||||||||| ||||||||| || ||||| Sbjct: 35563 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagc 35609
>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141841 Score = 54.0 bits (27), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 86 gcgcaagagctcatgtttgcctacaacatctccatggtgctcagagc 132 |||||||| |||||||||||||||||| ||||||||| || ||||| Sbjct: 102312 gcgcaagaactcatgtttgcctacaaccgctccatggtcctgagagc 102266
>emb|AL162426.20| Human DNA sequence from clone RP11-56D16 on chromosome 9 Contains the STXBP1 gene for syntaxin binding protein 1 (UNC18,hUNC18,MUNC18-1), two novel genes, a novel gene (LOC138428), the gene for a novel protien (LOC286207), the gene for anovel protein (FLJ32780), the TOR2A gene for torsin family 2, member A (FLJ14771), the 3' end of the SH2D3C gene for SH2 domain containing 3C (CHAT,NSP3) and five CpG islands, complete sequence Length = 163338 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 aggctgtgcttccaagcgcaagagct 96 ||||||||||||||||| |||||||| Sbjct: 60628 aggctgtgcttccaagcccaagagct 60653
>ref|XM_418085.1| PREDICTED: Gallus gallus similar to Myosin Id (LOC419963), mRNA Length = 5646 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 gagcagccatccagctgggc 148 |||||||||||||||||||| Sbjct: 1631 gagcagccatccagctgggc 1612
>ref|XM_745088.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04330) partial mRNA Length = 1119 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 gtcgccggagtggatgagga 66 |||||||||||||||||||| Sbjct: 291 gtcgccggagtggatgagga 272
>emb|BX323587.5| Zebrafish DNA sequence from clone CH211-100L3, complete sequence Length = 90800 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 catggtgctcagagcagcca 137 |||||||||||||||||||| Sbjct: 39007 catggtgctcagagcagcca 39026
>emb|BX569781.7| Zebrafish DNA sequence from clone DKEY-72L18 in linkage group 17, complete sequence Length = 170138 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 catgtttgcctacaacatct 116 |||||||||||||||||||| Sbjct: 133275 catgtttgcctacaacatct 133294
>gb|AC005805.12| Homo sapiens 12 PAC RP3-473L9 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 113064 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ctccatggtgctcagagcag 134 |||||||||||||||||||| Sbjct: 16033 ctccatggtgctcagagcag 16052
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete sequence Length = 92652 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 catgtttgcctacaacatct 116 |||||||||||||||||||| Sbjct: 83981 catgtttgcctacaacatct 84000
>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23, complete sequence Length = 178148 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ctcagagcagccatccagct 144 |||||||||||||||||||| Sbjct: 173873 ctcagagcagccatccagct 173854
>gb|AY560116.1| Feline calicivirus isolate UTCVM-H1, complete genome Length = 7685 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 ggtgctcagagcagccatcc 140 |||||||||||||||||||| Sbjct: 2093 ggtgctcagagcagccatcc 2074
>gb|AC169084.3| Mus musculus BAC clone RP24-427O13 from chromosome 9, complete sequence Length = 170491 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ctccatggtgctcagagcag 134 |||||||||||||||||||| Sbjct: 67690 ctccatggtgctcagagcag 67709 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,947,233 Number of Sequences: 3902068 Number of extensions: 1947233 Number of successful extensions: 32755 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32728 Number of HSP's gapped (non-prelim): 27 length of query: 231 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 209 effective length of database: 17,147,199,772 effective search space: 3583764752348 effective search space used: 3583764752348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)