ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags34p02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467437.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3793 Score = 587 bits (296), Expect = e-164 Identities = 480/539 (89%), Gaps = 2/539 (0%) Strand = Plus / Plus Query: 1 gcaataagtcaagtccttgacaagnataatctcgggtactcctggnaccatttcgtctta 60 |||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| ||| Sbjct: 2654 gcaataagtcaagtccttgagaagg-taatctctggtactcctgg-accatttcgtatta 2711 Query: 61 tcaatggaattcgaaggccgatgccacttgtcagacttctggaggtggaactttatccaa 120 |||||||| || | ||||| || ||| | |||||||||||||||||||||| ||||||| Sbjct: 2712 tcaatggagttaggaggccaataccattcatcagacttctggaggtggaactctatccaa 2771 Query: 121 ctttgctctcgaaagcaagaagttatggattgagcgataactgggtgcaggctctcgcta 180 ||||||| || || |||||||||||||||||||| |||| ||||||||||||||| |||| Sbjct: 2772 ctttgctttcaaaggcaagaagttatggattgagtgatagctgggtgcaggctctagcta 2831 Query: 181 agaaggaccctgtgcgcagacaagtcttgcgggtcaaaggttgtttggctggatcaaaag 240 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 2832 agaaggaccctgtgcgaagacaagttttgcgggtcaaaggttgtttggctggatccaaag 2891 Query: 241 cggaaaagcttctggaacagggagatatgattctggctatcaacaaggaaccgataacat 300 | ||||| || || ||||||||||| ||||| || |||||||| ||||| || || |||| Sbjct: 2892 cagaaaatctccttgaacagggagacatgatccttgctatcaataaggagccaattacat 2951 Query: 301 gctttcttgacatcgagaatgcttgccaaaagttagaccaacctatcgattcagatggtg 360 |||| || || ||||||||||||||||| || || |||||| || | ||||||||||| | Sbjct: 2952 gcttcctagatatcgagaatgcttgccagaaattggaccaatctgttgattcagatggag 3011 Query: 361 tgcttaacatgacaatatttcgtcagggaaaagaaattgaccttgttgttggaaccgatg 420 | ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| Sbjct: 3012 tccttaacatgacaatattccgtcagggaaaagaaattgatcttattgttggaaccgatg 3071 Query: 421 taagagatggtaatggttcaacgaggatggtgaattggtgtggatccataattcaggatc 480 |||||||||| ||||| |||| ||||||||||||||||||||| |||||| ||||||| Sbjct: 3072 taagagatggcaatggaacaacacggatggtgaattggtgtggatgcataatccaggatc 3131 Query: 481 ctcattcagcagtgcgtgcacttggttttttgcccaaggaaggtcatggagtttatgtt 539 |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| Sbjct: 3132 ctcattcagcagtgcgcgcacttggttttttgcccgaagaaggtcatggagtttatgtt 3190
>dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full insert sequence Length = 3793 Score = 587 bits (296), Expect = e-164 Identities = 480/539 (89%), Gaps = 2/539 (0%) Strand = Plus / Plus Query: 1 gcaataagtcaagtccttgacaagnataatctcgggtactcctggnaccatttcgtctta 60 |||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| ||| Sbjct: 2654 gcaataagtcaagtccttgagaagg-taatctctggtactcctgg-accatttcgtatta 2711 Query: 61 tcaatggaattcgaaggccgatgccacttgtcagacttctggaggtggaactttatccaa 120 |||||||| || | ||||| || ||| | |||||||||||||||||||||| ||||||| Sbjct: 2712 tcaatggagttaggaggccaataccattcatcagacttctggaggtggaactctatccaa 2771 Query: 121 ctttgctctcgaaagcaagaagttatggattgagcgataactgggtgcaggctctcgcta 180 ||||||| || || |||||||||||||||||||| |||| ||||||||||||||| |||| Sbjct: 2772 ctttgctttcaaaggcaagaagttatggattgagtgatagctgggtgcaggctctagcta 2831 Query: 181 agaaggaccctgtgcgcagacaagtcttgcgggtcaaaggttgtttggctggatcaaaag 240 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 2832 agaaggaccctgtgcgaagacaagttttgcgggtcaaaggttgtttggctggatccaaag 2891 Query: 241 cggaaaagcttctggaacagggagatatgattctggctatcaacaaggaaccgataacat 300 | ||||| || || ||||||||||| ||||| || |||||||| ||||| || || |||| Sbjct: 2892 cagaaaatctccttgaacagggagacatgatccttgctatcaataaggagccaattacat 2951 Query: 301 gctttcttgacatcgagaatgcttgccaaaagttagaccaacctatcgattcagatggtg 360 |||| || || ||||||||||||||||| || || |||||| || | ||||||||||| | Sbjct: 2952 gcttcctagatatcgagaatgcttgccagaaattggaccaatctgttgattcagatggag 3011 Query: 361 tgcttaacatgacaatatttcgtcagggaaaagaaattgaccttgttgttggaaccgatg 420 | ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| Sbjct: 3012 tccttaacatgacaatattccgtcagggaaaagaaattgatcttattgttggaaccgatg 3071 Query: 421 taagagatggtaatggttcaacgaggatggtgaattggtgtggatccataattcaggatc 480 |||||||||| ||||| |||| ||||||||||||||||||||| |||||| ||||||| Sbjct: 3072 taagagatggcaatggaacaacacggatggtgaattggtgtggatgcataatccaggatc 3131 Query: 481 ctcattcagcagtgcgtgcacttggttttttgcccaaggaaggtcatggagtttatgtt 539 |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| Sbjct: 3132 ctcattcagcagtgcgcgcacttggttttttgcccgaagaaggtcatggagtttatgtt 3190
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 226 bits (114), Expect = 6e-56 Identities = 195/222 (87%) Strand = Plus / Minus Query: 166 tgcaggctctcgctaagaaggaccctgtgcgcagacaagtcttgcgggtcaaaggttgtt 225 |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 29503812 tgcaggctctagctaagaaggaccctgtgcgaagacaagttttgcgggtcaaaggttgtt 29503753 Query: 226 tggctggatcaaaagcggaaaagcttctggaacagggagatatgattctggctatcaaca 285 |||||||||| ||||| ||||| || || ||||||||||| ||||| || |||||||| | Sbjct: 29503752 tggctggatccaaagcagaaaatctccttgaacagggagacatgatccttgctatcaata 29503693 Query: 286 aggaaccgataacatgctttcttgacatcgagaatgcttgccaaaagttagaccaaccta 345 |||| || || |||||||| || || ||||||||||||||||| || || |||||| || Sbjct: 29503692 aggagccaattacatgcttcctagatatcgagaatgcttgccagaaattggaccaatctg 29503633 Query: 346 tcgattcagatggtgtgcttaacatgacaatatttcgtcagg 387 | ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 29503632 ttgattcagatggagtccttaacatgacaatattccgtcagg 29503591 Score = 214 bits (108), Expect = 2e-52 Identities = 144/156 (92%) Strand = Plus / Minus Query: 384 cagggaaaagaaattgaccttgttgttggaaccgatgtaagagatggtaatggttcaacg 443 ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||| Sbjct: 29503501 cagggaaaagaaattgatcttattgttggaaccgatgtaagagatggcaatggaacaaca 29503442 Query: 444 aggatggtgaattggtgtggatccataattcaggatcctcattcagcagtgcgtgcactt 503 ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| Sbjct: 29503441 cggatggtgaattggtgtggatgcataatccaggatcctcattcagcagtgcgcgcactt 29503382 Query: 504 ggttttttgcccaaggaaggtcatggagtttatgtt 539 |||||||||||| | ||||||||||||||||||||| Sbjct: 29503381 ggttttttgcccgaagaaggtcatggagtttatgtt 29503346 Score = 167 bits (84), Expect = 5e-38 Identities = 151/171 (88%), Gaps = 2/171 (1%) Strand = Plus / Minus Query: 1 gcaataagtcaagtccttgacaagnataatctcgggtactcctggnaccatttcgtctta 60 |||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| ||| Sbjct: 29504294 gcaataagtcaagtccttgagaagg-taatctctggtactcctgg-accatttcgtatta 29504237 Query: 61 tcaatggaattcgaaggccgatgccacttgtcagacttctggaggtggaactttatccaa 120 |||||||| || | ||||| || ||| | |||||||||||||||||||||| ||||||| Sbjct: 29504236 tcaatggagttaggaggccaataccattcatcagacttctggaggtggaactctatccaa 29504177 Query: 121 ctttgctctcgaaagcaagaagttatggattgagcgataactgggtgcagg 171 ||||||| || || |||||||||||||||||||| |||| ||||||||||| Sbjct: 29504176 ctttgctttcaaaggcaagaagttatggattgagtgatagctgggtgcagg 29504126
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 226 bits (114), Expect = 6e-56 Identities = 195/222 (87%) Strand = Plus / Minus Query: 166 tgcaggctctcgctaagaaggaccctgtgcgcagacaagtcttgcgggtcaaaggttgtt 225 |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 98842 tgcaggctctagctaagaaggaccctgtgcgaagacaagttttgcgggtcaaaggttgtt 98783 Query: 226 tggctggatcaaaagcggaaaagcttctggaacagggagatatgattctggctatcaaca 285 |||||||||| ||||| ||||| || || ||||||||||| ||||| || |||||||| | Sbjct: 98782 tggctggatccaaagcagaaaatctccttgaacagggagacatgatccttgctatcaata 98723 Query: 286 aggaaccgataacatgctttcttgacatcgagaatgcttgccaaaagttagaccaaccta 345 |||| || || |||||||| || || ||||||||||||||||| || || |||||| || Sbjct: 98722 aggagccaattacatgcttcctagatatcgagaatgcttgccagaaattggaccaatctg 98663 Query: 346 tcgattcagatggtgtgcttaacatgacaatatttcgtcagg 387 | ||||||||||| || ||||||||||||||||| ||||||| Sbjct: 98662 ttgattcagatggagtccttaacatgacaatattccgtcagg 98621 Score = 214 bits (108), Expect = 2e-52 Identities = 144/156 (92%) Strand = Plus / Minus Query: 384 cagggaaaagaaattgaccttgttgttggaaccgatgtaagagatggtaatggttcaacg 443 ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||| Sbjct: 98531 cagggaaaagaaattgatcttattgttggaaccgatgtaagagatggcaatggaacaaca 98472 Query: 444 aggatggtgaattggtgtggatccataattcaggatcctcattcagcagtgcgtgcactt 503 ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| Sbjct: 98471 cggatggtgaattggtgtggatgcataatccaggatcctcattcagcagtgcgcgcactt 98412 Query: 504 ggttttttgcccaaggaaggtcatggagtttatgtt 539 |||||||||||| | ||||||||||||||||||||| Sbjct: 98411 ggttttttgcccgaagaaggtcatggagtttatgtt 98376 Score = 167 bits (84), Expect = 5e-38 Identities = 151/171 (88%), Gaps = 2/171 (1%) Strand = Plus / Minus Query: 1 gcaataagtcaagtccttgacaagnataatctcgggtactcctggnaccatttcgtctta 60 |||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| ||| Sbjct: 99324 gcaataagtcaagtccttgagaagg-taatctctggtactcctgg-accatttcgtatta 99267 Query: 61 tcaatggaattcgaaggccgatgccacttgtcagacttctggaggtggaactttatccaa 120 |||||||| || | ||||| || ||| | |||||||||||||||||||||| ||||||| Sbjct: 99266 tcaatggagttaggaggccaataccattcatcagacttctggaggtggaactctatccaa 99207 Query: 121 ctttgctctcgaaagcaagaagttatggattgagcgataactgggtgcagg 171 ||||||| || || |||||||||||||||||||| |||| ||||||||||| Sbjct: 99206 ctttgctttcaaaggcaagaagttatggattgagtgatagctgggtgcagg 99156
>ref|NM_111209.2| Arabidopsis thaliana protein binding / serine-type endopeptidase/ serine-type peptidase/ trypsin AT3G03380 mRNA, complete cds Length = 3602 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 216 aaaggttgtttggctggatcaaaagcggaaaagcttctggaacagggagatatgattctg 275 |||||||| |||| ||||||||||| ||||| ||||| ||||| || |||||| ||||| Sbjct: 2794 aaaggttgcctggcaggatcaaaagctgaaaaccttcttgaacaaggcgatatggttctg 2853 Query: 276 gc 277 || Sbjct: 2854 gc 2855
>gb|AC009895.4|ATAC009895 Arabidopsis thaliana chromosome III BAC T21P5 genomic sequence, complete sequence Length = 82289 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 216 aaaggttgtttggctggatcaaaagcggaaaagcttctggaacagggagatatgattctg 275 |||||||| |||| ||||||||||| ||||| ||||| ||||| || |||||| ||||| Sbjct: 52839 aaaggttgcctggcaggatcaaaagctgaaaaccttcttgaacaaggcgatatggttctg 52780 Query: 276 gc 277 || Sbjct: 52779 gc 52778
>gb|AY078951.1| Arabidopsis thaliana AT3g03380/T21P5_20 mRNA, complete cds Length = 3604 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 216 aaaggttgtttggctggatcaaaagcggaaaagcttctggaacagggagatatgattctg 275 |||||||| |||| ||||||||||| ||||| ||||| ||||| || |||||| ||||| Sbjct: 2794 aaaggttgcctggcaggatcaaaagctgaaaaccttcttgaacaaggcgatatggttctg 2853 Query: 276 gc 277 || Sbjct: 2854 gc 2855
>gb|BT002727.1| Arabidopsis thaliana At3g03380/T21P5_20 gene, complete cds Length = 3294 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 216 aaaggttgtttggctggatcaaaagcggaaaagcttctggaacagggagatatgattctg 275 |||||||| |||| ||||||||||| ||||| ||||| ||||| || |||||| ||||| Sbjct: 2689 aaaggttgcctggcaggatcaaaagctgaaaaccttcttgaacaaggcgatatggttctg 2748 Query: 276 gc 277 || Sbjct: 2749 gc 2750
>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence Length = 219218 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 496 gtgcacttggttttttgccca 516 ||||||||||||||||||||| Sbjct: 125684 gtgcacttggttttttgccca 125704
>gb|AC151577.2| Mus musculus BAC clone RP23-371D23 from chromosome 5, complete sequence Length = 206735 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 496 gtgcacttggttttttgccca 516 ||||||||||||||||||||| Sbjct: 147775 gtgcacttggttttttgccca 147755
>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence Length = 164223 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 aaaagcttctggaacagggag 264 ||||||||||||||||||||| Sbjct: 52227 aaaagcttctggaacagggag 52207
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 tggaactttatccaactttgc 126 ||||||||||||||||||||| Sbjct: 21998870 tggaactttatccaactttgc 21998890
>dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0013G11 Length = 151405 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 tggaactttatccaactttgc 126 ||||||||||||||||||||| Sbjct: 90914 tggaactttatccaactttgc 90934
>gb|AY944311.1| Drosophila simulans heterochromatin protein 1A (HP1A) gene, complete cds Length = 1051 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ttgccaaaagttagaccaac 342 |||||||||||||||||||| Sbjct: 726 ttgccaaaagttagaccaac 707
>gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosome 16, complete sequence Length = 174250 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ataagtcaagtccttgacaa 23 |||||||||||||||||||| Sbjct: 61942 ataagtcaagtccttgacaa 61923
>gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, complete sequence Length = 191211 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 507 tttttgcccaaggaaggtcatgga 530 |||||||||||||||| ||||||| Sbjct: 53573 tttttgcccaaggaagctcatgga 53596 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,065,391 Number of Sequences: 3902068 Number of extensions: 4065391 Number of successful extensions: 72989 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72911 Number of HSP's gapped (non-prelim): 70 length of query: 539 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 516 effective length of database: 17,143,297,704 effective search space: 8845941615264 effective search space used: 8845941615264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
