| Clone Name | bags35e02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ000226.1|HVJ000226 Hordeum vulgare mRNA for expressed sequence tag Length = 334 Score = 553 bits (279), Expect = e-154 Identities = 289/291 (99%), Gaps = 1/291 (0%) Strand = Plus / Plus Query: 1 tagcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtg 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 24 tagcattacattgaacaag-aatgctgtcttcggtgacagcagtgcattgtccccgggtg 82 Query: 61 gtgtccgcattggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83 gtgtccgcattggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagc 142 Query: 121 agatcgccgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 143 agatcgccgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacg 202 Query: 181 ggaagctgctcaaggacttctccaagggcctggtgaacaacaaggacattgagaacctca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 203 ggaagctgctcaaggacttctccaagggcctggtgaacaacaaggacattgagaacctca 262 Query: 241 aggtcgaggtcgagaagtttgccctctcctttgacatgcccggcttcacgc 291 |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 263 aggtcgaggttgagaagtttgccctctcctttgacatgcccggcttcacgc 313
>dbj|AK105983.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G03, full insert sequence Length = 1153 Score = 357 bits (180), Expect = 1e-95 Identities = 262/288 (90%), Gaps = 1/288 (0%) Strand = Plus / Plus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| | |||||| ||||||||||| |||||||||||||||||| | || || || Sbjct: 548 agcattacacttaacaag-aatgctgtctttggtgacagcagtgcattggctcctggcgg 606 Query: 62 tgtccgcattggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagca 121 ||||||||||||| ||||||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 607 tgtccgcattggtactcctgcgatgacatccaggggtcttgtcgagaaggactttgagca 666 Query: 122 gatcgccgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacgg 181 ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 667 gatcggcgagttcctccaccaggccgtgaccatctgcctcaacatccagaaggagcacgg 726 Query: 182 gaagctgctcaaggacttctccaagggcctggtgaacaacaaggacattgagaacctcaa 241 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 727 caagctcctcaaggacttctccaagggcctggtgaacaacaaggacatcgagaacctcaa 786 Query: 242 ggtcgaggtcgagaagtttgccctctcctttgacatgcccggcttcac 289 | | |||||||||||||| ||| |||||| ||||||||||||||||| Sbjct: 787 gctggaggtcgagaagttcgccacctccttcgacatgcccggcttcac 834
>dbj|AK101450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039N02, full insert sequence Length = 1896 Score = 357 bits (180), Expect = 1e-95 Identities = 262/288 (90%), Gaps = 1/288 (0%) Strand = Plus / Plus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| | |||||| ||||||||||| |||||||||||||||||| | || || || Sbjct: 1183 agcattacacttaacaag-aatgctgtctttggtgacagcagtgcattggctcctggcgg 1241 Query: 62 tgtccgcattggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagca 121 ||||||||||||| ||||||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 1242 tgtccgcattggtactcctgcgatgacatccaggggtcttgtcgagaaggactttgagca 1301 Query: 122 gatcgccgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacgg 181 ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 1302 gatcggcgagttcctccaccaggccgtgaccatctgcctcaacatccagaaggagcacgg 1361 Query: 182 gaagctgctcaaggacttctccaagggcctggtgaacaacaaggacattgagaacctcaa 241 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1362 caagctcctcaaggacttctccaagggcctggtgaacaacaaggacatcgagaacctcaa 1421 Query: 242 ggtcgaggtcgagaagtttgccctctcctttgacatgcccggcttcac 289 | | |||||||||||||| ||| |||||| ||||||||||||||||| Sbjct: 1422 gctggaggtcgagaagttcgccacctccttcgacatgcccggcttcac 1469
>dbj|AK071541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100I04, full insert sequence Length = 1811 Score = 357 bits (180), Expect = 1e-95 Identities = 262/288 (90%), Gaps = 1/288 (0%) Strand = Plus / Plus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| | |||||| ||||||||||| |||||||||||||||||| | || || || Sbjct: 1183 agcattacacttaacaag-aatgctgtctttggtgacagcagtgcattggctcctggcgg 1241 Query: 62 tgtccgcattggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagca 121 ||||||||||||| ||||||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 1242 tgtccgcattggtactcctgcgatgacatccaggggtcttgtcgagaaggactttgagca 1301 Query: 122 gatcgccgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacgg 181 ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 1302 gatcggcgagttcctccaccaggccgtgaccatctgcctcaacatccagaaggagcacgg 1361 Query: 182 gaagctgctcaaggacttctccaagggcctggtgaacaacaaggacattgagaacctcaa 241 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1362 caagctcctcaaggacttctccaagggcctggtgaacaacaaggacatcgagaacctcaa 1421 Query: 242 ggtcgaggtcgagaagtttgccctctcctttgacatgcccggcttcac 289 | | |||||||||||||| ||| |||||| ||||||||||||||||| Sbjct: 1422 gctggaggtcgagaagttcgccacctccttcgacatgcccggcttcac 1469
>dbj|AK105624.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C10, full insert sequence Length = 1811 Score = 349 bits (176), Expect = 3e-93 Identities = 261/288 (90%), Gaps = 1/288 (0%) Strand = Plus / Plus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| | |||||| ||||||||||| |||||||||||||||||| | || || || Sbjct: 1182 agcattacacttaacaag-aatgctgtctttggtgacagcagtgcattggctcctggcgg 1240 Query: 62 tgtccgcattggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagca 121 ||||||||||||| ||||||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 1241 tgtccgcattggtactcctgcgatgacatccaggggtcttgtcgagaaggactttgagca 1300 Query: 122 gatcgccgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacgg 181 ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 1301 gatcggcgagttcctccaccaggccgtgaccatctgcctcaacatccagaaggagcacgg 1360 Query: 182 gaagctgctcaaggacttctccaagggcctggtgaacaacaaggacattgagaacctcaa 241 ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 1361 caagctcctcaaggacttctccaagggcctggtgaacaacaaggacgtcgagaacctcaa 1420 Query: 242 ggtcgaggtcgagaagtttgccctctcctttgacatgcccggcttcac 289 | | |||||||||||||| ||| |||||| ||||||||||||||||| Sbjct: 1421 gctggaggtcgagaagttcgccacctccttcgacatgcccggcttcac 1468
>gb|AY105338.1| Zea mays PCO102700 mRNA sequence Length = 1951 Score = 341 bits (172), Expect = 7e-91 Identities = 257/284 (90%), Gaps = 1/284 (0%) Strand = Plus / Plus Query: 8 acattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtggtgtccg 67 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1316 acattgaacaag-aatgctgtcttcggtgacagcagtgcattgtctccgggtggtgtccg 1374 Query: 68 cattggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgc 127 |||||| || || || |||||||| |||||||| | |||||||| ||||||||||| | Sbjct: 1375 cattggcgcgccagcaatgacctcgaggggtctactggagaaggatttcgagcagattgg 1434 Query: 128 cgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagct 187 |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct: 1435 ggagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagtacggcaagct 1494 Query: 188 gctcaaggacttctccaagggcctggtgaacaacaaggacattgagaacctcaaggtcga 247 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 1495 cctcaaggacttcaacaagggcctggtgaacaacaaggacatcgagaacctcaaggtcca 1554 Query: 248 ggtcgagaagtttgccctctcctttgacatgcccggcttcacgc 291 ||| |||||||||||| |||||| |||||||| || ||||||| Sbjct: 1555 ggtggagaagtttgccgactccttcgacatgcctgggttcacgc 1598
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 289 bits (146), Expect = 2e-75 Identities = 197/214 (92%) Strand = Plus / Plus Query: 76 ctcctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgagttcc 135 ||||||| ||||| ||||||||||| || ||||||||||| |||||||||| |||||||| Sbjct: 86507 ctcctgcgatgacatccaggggtcttgtcgagaaggactttgagcagatcggcgagttcc 86566 Query: 136 tccaccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagctgctcaagg 195 |||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| Sbjct: 86567 tccaccaggccgtgaccatctgcctcaacatccagaaggagcacggcaagctcctcaagg 86626 Query: 196 acttctccaagggcctggtgaacaacaaggacattgagaacctcaaggtcgaggtcgaga 255 |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct: 86627 acttctccaagggcctggtgaacaacaaggacatcgagaacctcaagctggaggtcgaga 86686 Query: 256 agtttgccctctcctttgacatgcccggcttcac 289 |||| ||| |||||| ||||||||||||||||| Sbjct: 86687 agttcgccacctccttcgacatgcccggcttcac 86720 Score = 75.8 bits (38), Expect = 7e-11 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| | |||||| ||||||||||| |||||||||||||||||| | || || || Sbjct: 86167 agcattacacttaacaag-aatgctgtctttggtgacagcagtgcattggctcctggcgg 86225 Query: 62 tgtccgcattggtg 75 |||||||||||||| Sbjct: 86226 tgtccgcattggtg 86239
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 289 bits (146), Expect = 2e-75 Identities = 197/214 (92%) Strand = Plus / Plus Query: 76 ctcctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgagttcc 135 ||||||| ||||| ||||||||||| || ||||||||||| |||||||||| |||||||| Sbjct: 14863441 ctcctgcgatgacatccaggggtcttgtcgagaaggactttgagcagatcggcgagttcc 14863500 Query: 136 tccaccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagctgctcaagg 195 |||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| Sbjct: 14863501 tccaccaggccgtgaccatctgcctcaacatccagaaggagcacggcaagctcctcaagg 14863560 Query: 196 acttctccaagggcctggtgaacaacaaggacattgagaacctcaaggtcgaggtcgaga 255 |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct: 14863561 acttctccaagggcctggtgaacaacaaggacatcgagaacctcaagctggaggtcgaga 14863620 Query: 256 agtttgccctctcctttgacatgcccggcttcac 289 |||| ||| |||||| ||||||||||||||||| Sbjct: 14863621 agttcgccacctccttcgacatgcccggcttcac 14863654 Score = 75.8 bits (38), Expect = 7e-11 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| | |||||| ||||||||||| |||||||||||||||||| | || || || Sbjct: 14863101 agcattacacttaacaag-aatgctgtctttggtgacagcagtgcattggctcctggcgg 14863159 Query: 62 tgtccgcattggtg 75 |||||||||||||| Sbjct: 14863160 tgtccgcattggtg 14863173
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 289 bits (146), Expect = 2e-75 Identities = 197/214 (92%) Strand = Plus / Plus Query: 76 ctcctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgagttcc 135 ||||||| ||||| ||||||||||| || ||||||||||| |||||||||| |||||||| Sbjct: 14943408 ctcctgcgatgacatccaggggtcttgtcgagaaggactttgagcagatcggcgagttcc 14943467 Query: 136 tccaccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagctgctcaagg 195 |||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| Sbjct: 14943468 tccaccaggccgtgaccatctgcctcaacatccagaaggagcacggcaagctcctcaagg 14943527 Query: 196 acttctccaagggcctggtgaacaacaaggacattgagaacctcaaggtcgaggtcgaga 255 |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct: 14943528 acttctccaagggcctggtgaacaacaaggacatcgagaacctcaagctggaggtcgaga 14943587 Query: 256 agtttgccctctcctttgacatgcccggcttcac 289 |||| ||| |||||| ||||||||||||||||| Sbjct: 14943588 agttcgccacctccttcgacatgcccggcttcac 14943621 Score = 75.8 bits (38), Expect = 7e-11 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| | |||||| ||||||||||| |||||||||||||||||| | || || || Sbjct: 14943068 agcattacacttaacaag-aatgctgtctttggtgacagcagtgcattggctcctggcgg 14943126 Query: 62 tgtccgcattggtg 75 |||||||||||||| Sbjct: 14943127 tgtccgcattggtg 14943140
>dbj|AK101088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L02, full insert sequence Length = 1944 Score = 194 bits (98), Expect = 1e-46 Identities = 222/262 (84%), Gaps = 1/262 (0%) Strand = Plus / Plus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| ||||||| ||||||||||| || || ||||||||| |||| || ||||| Sbjct: 1380 agcattacactgaacaaa-aatgctgtctttggggatagcagtgcaatgtcacctggtgg 1438 Query: 62 tgtccgcattggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagca 121 ||||||||||||| | ||||| ||||| || |||||| |||| ||| ||||||| | || Sbjct: 1439 tgtccgcattggtacacctgccatgacatcaaggggtttggtagaggaggactttgtaca 1498 Query: 122 gatcgccgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacgg 181 ||||||||||||||| ||||||||||||||||||||| || | | |||||||||| || Sbjct: 1499 gatcgccgagttccttcaccaggcagtgaccatctgcttggatgttcagaaggagcgtgg 1558 Query: 182 gaagctgctcaaggacttctccaagggcctggtgaacaacaaggacattgagaacctcaa 241 ||||| |||||| ||||| | ||||||||| ||||||||||||||||||| |||||| Sbjct: 1559 caagcttctcaagtacttcaacgagggcctggagaacaacaaggacattgaggacctcag 1618 Query: 242 ggtcgaggtcgagaagtttgcc 263 || ||||| |||||||||||| Sbjct: 1619 ggcggaggtggagaagtttgcc 1640
>gb|AY106587.1| Zea mays PCO066539 mRNA sequence Length = 603 Score = 167 bits (84), Expect = 2e-38 Identities = 195/232 (84%) Strand = Plus / Plus Query: 57 ggtggtgtccgcattggtgctcctgctatgacctccaggggtctggttgagaaggacttc 116 |||||||| ||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 15 ggtggtgtgcgcattggtacacctgctatgacctcaaggggtttggttgagaaggacttc 74 Query: 117 gagcagatcgccgagttcctccaccaggcagtgaccatctgcctgaacatccagaaggag 176 | |||||| ||||||| ||| |||| || |||||||||||| ||| ||||||| |||| Sbjct: 75 gtgcagattgccgagtaccttcaccgagctgtgaccatctgcttgagcatccaggcggag 134 Query: 177 cacgggaagctgctcaaggacttctccaagggcctggtgaacaacaaggacattgagaac 236 || || ||| | |||||||||||| |||||| ||||| | ||||||||||| |||||| Sbjct: 135 catggcaagattctcaaggacttcaagaagggcttggtgcaaaacaaggacatagagaac 194 Query: 237 ctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccggcttca 288 || | || |||||||||||||| ||| || ||||||||||| ||||||| Sbjct: 195 ctgagggcggaggtcgagaagttcgccacttcatttgacatgcctggcttca 246
>gb|DQ175859.1| Hordeum vulgare clone DsC31 Ds insertion site flanking region genomic sequence Length = 659 Score = 165 bits (83), Expect = 1e-37 Identities = 122/135 (90%) Strand = Plus / Minus Query: 72 ggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgag 131 |||||||| || ||||| || ||||||||||| ||||| || ||||||||||| |||||| Sbjct: 645 ggtgctccagcaatgacttcaaggggtctggtcgagaaagatttcgagcagattgccgag 586 Query: 132 ttcctccaccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagctgctc 191 |||||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||||||| Sbjct: 585 ttcctccaccaggctgtgacgatctgcttgaaaatccagaaggagcacggcaagctgctc 526 Query: 192 aaggacttctccaag 206 ||||||||||||||| Sbjct: 525 aaggacttctccaag 511
>gb|AF498509.1| Zea mays cultivar DE811 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 155 bits (78), Expect = 9e-35 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| ||||||| |||||||||||| Sbjct: 375 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcntggtgaacaaca 316 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 315 aggacattgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 256 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 255 ggttcacgc 247
>gb|AF498521.1| Zea mays cultivar C_9 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 375 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 316 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 315 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 256 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 255 ggttcacgc 247
>gb|AF498520.1| Zea mays cultivar F_7 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 374 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 374 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 315 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 314 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 255 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 254 ggttcacgc 246
>gb|AF498519.1| Zea mays cultivar D_9 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 375 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 316 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 315 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 256 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 255 ggttcacgc 247
>gb|AF498518.1| Zea mays cultivar D_6 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 375 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 316 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 315 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 256 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 255 ggttcacgc 247
>gb|AF498517.1| Zea mays cultivar F_1 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 375 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 316 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 315 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 256 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 255 ggttcacgc 247
>gb|AF498516.1| Zea mays cultivar Mo17 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 374 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 374 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 315 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 314 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 255 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 254 ggttcacgc 246
>gb|AF498515.1| Zea mays cultivar D_7 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 369 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 369 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 310 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 309 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 250 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 249 ggttcacgc 241
>gb|AF498514.1| Zea mays cultivar Wf9Ht hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 376 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 317 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 316 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 257 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 256 ggttcacgc 248
>gb|AF498510.1| Zea mays cultivar H60 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 369 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 369 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 310 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 309 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 250 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 249 ggttcacgc 241
>gb|AF498508.1| Zea mays cultivar 684 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 376 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 317 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 316 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 257 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 256 ggttcacgc 248
>gb|AF498507.1| Zea mays cultivar D71-4HT hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 366 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 366 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 307 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 306 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 247 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 246 ggttcacgc 238
>gb|AF498506.1| Zea mays cultivar H99 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 371 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 371 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 312 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 311 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 252 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 251 ggttcacgc 243
>gb|AF498505.1| Zea mays cultivar CO109 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 371 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 371 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 312 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 311 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 252 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 251 ggttcacgc 243
>gb|AF498504.1| Zea mays cultivar I_1 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 375 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 316 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 315 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 256 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 255 ggttcacgc 247
>gb|AF498503.1| Zea mays cultivar B73 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 376 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 317 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 316 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 257 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 256 ggttcacgc 248
>gb|AF498502.1| Zea mays cultivar F_2 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 376 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 317 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 316 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 257 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 256 ggttcacgc 248
>gb|AF498501.1| Zea mays cultivar G_1 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 372 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 372 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 313 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 312 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 253 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 252 ggttcacgc 244
>gb|AF498500.1| Zea mays cultivar B_6 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 374 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 374 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 315 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 314 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 255 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 254 ggttcacgc 246
>gb|AF498499.1| Zea mays cultivar H_4 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 369 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 369 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 310 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 309 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 250 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 249 ggttcacgc 241
>gb|AF498498.1| Zea mays cultivar F_4 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 375 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 375 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 316 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 315 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 256 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 255 ggttcacgc 247
>gb|AF498497.1| Zea mays cultivar F_3 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 376 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 317 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 316 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 257 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 256 ggttcacgc 248
>gb|AF498496.1| Zea mays cultivar F_5 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 373 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 373 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 314 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 313 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 254 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 253 ggttcacgc 245
>gb|AF498495.1| Zea mays cultivar H_5 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 374 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 374 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 315 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 314 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 255 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 254 ggttcacgc 246
>gb|AF498492.1| Zea mays cultivar 647 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 366 Score = 153 bits (77), Expect = 4e-34 Identities = 116/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||||| Sbjct: 366 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcctggtgaacaaca 307 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 306 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 247 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 246 ggttcacgc 238
>gb|AF498511.1| Zea mays cultivar B84 hydroxymethyltransferase-like protein gene, 3'UTR and partial cds Length = 376 Score = 147 bits (74), Expect = 2e-32 Identities = 115/129 (89%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||||||||| |||| ||||| |||||||||||| ||||||| |||||||||||| Sbjct: 376 acatccagaaggagtacggcaagctcctcaaggacttcaacaagggcntggtgaacaaca 317 Query: 223 aggacattgagaacctcaaggtcgaggtcgagaagtttgccctctcctttgacatgcccg 282 ||||||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| | Sbjct: 316 aggacatcgagaacctcaaggtccaggtggagaagtttgccgactccttcgacatgcctg 257 Query: 283 gcttcacgc 291 | ||||||| Sbjct: 256 ggttcacgc 248
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 6e-30 Identities = 157/186 (84%) Strand = Plus / Minus Query: 78 cctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgagttcctc 137 ||||| ||||| || |||||| |||| ||| ||||||| | ||||||||||||||||| Sbjct: 12437571 cctgccatgacatcaaggggtttggtagaggaggactttgtacagatcgccgagttcctt 12437512 Query: 138 caccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagctgctcaaggac 197 ||||||||||||||||||||| || | | |||||||||| || ||||| |||||| || Sbjct: 12437511 caccaggcagtgaccatctgcttggatgttcagaaggagcgtggcaagcttctcaagtac 12437452 Query: 198 ttctccaagggcctggtgaacaacaaggacattgagaacctcaaggtcgaggtcgagaag 257 ||| | ||||||||| ||||||||||||||||||| |||||| || ||||| |||||| Sbjct: 12437451 ttcaacgagggcctggagaacaacaaggacattgaggacctcagggcggaggtggagaag 12437392 Query: 258 tttgcc 263 |||||| Sbjct: 12437391 tttgcc 12437386 Score = 65.9 bits (33), Expect = 7e-08 Identities = 64/73 (87%), Gaps = 1/73 (1%) Strand = Plus / Minus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| ||||||| ||||||||||| || || ||||||||| |||| || ||||| Sbjct: 12438505 agcattacactgaacaaa-aatgctgtctttggggatagcagtgcaatgtcacctggtgg 12438447 Query: 62 tgtccgcattggt 74 ||||||||||||| Sbjct: 12438446 tgtccgcattggt 12438434
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 6e-30 Identities = 157/186 (84%) Strand = Plus / Minus Query: 78 cctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgagttcctc 137 ||||| ||||| || |||||| |||| ||| ||||||| | ||||||||||||||||| Sbjct: 12391941 cctgccatgacatcaaggggtttggtagaggaggactttgtacagatcgccgagttcctt 12391882 Query: 138 caccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagctgctcaaggac 197 ||||||||||||||||||||| || | | |||||||||| || ||||| |||||| || Sbjct: 12391881 caccaggcagtgaccatctgcttggatgttcagaaggagcgtggcaagcttctcaagtac 12391822 Query: 198 ttctccaagggcctggtgaacaacaaggacattgagaacctcaaggtcgaggtcgagaag 257 ||| | ||||||||| ||||||||||||||||||| |||||| || ||||| |||||| Sbjct: 12391821 ttcaacgagggcctggagaacaacaaggacattgaggacctcagggcggaggtggagaag 12391762 Query: 258 tttgcc 263 |||||| Sbjct: 12391761 tttgcc 12391756 Score = 65.9 bits (33), Expect = 7e-08 Identities = 64/73 (87%), Gaps = 1/73 (1%) Strand = Plus / Minus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| ||||||| ||||||||||| || || ||||||||| |||| || ||||| Sbjct: 12392875 agcattacactgaacaaa-aatgctgtctttggggatagcagtgcaatgtcacctggtgg 12392817 Query: 62 tgtccgcattggt 74 ||||||||||||| Sbjct: 12392816 tgtccgcattggt 12392804
>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163702 Score = 139 bits (70), Expect = 6e-30 Identities = 157/186 (84%) Strand = Plus / Minus Query: 78 cctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgagttcctc 137 ||||| ||||| || |||||| |||| ||| ||||||| | ||||||||||||||||| Sbjct: 151936 cctgccatgacatcaaggggtttggtagaggaggactttgtacagatcgccgagttcctt 151877 Query: 138 caccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagctgctcaaggac 197 ||||||||||||||||||||| || | | |||||||||| || ||||| |||||| || Sbjct: 151876 caccaggcagtgaccatctgcttggatgttcagaaggagcgtggcaagcttctcaagtac 151817 Query: 198 ttctccaagggcctggtgaacaacaaggacattgagaacctcaaggtcgaggtcgagaag 257 ||| | ||||||||| ||||||||||||||||||| |||||| || ||||| |||||| Sbjct: 151816 ttcaacgagggcctggagaacaacaaggacattgaggacctcagggcggaggtggagaag 151757 Query: 258 tttgcc 263 |||||| Sbjct: 151756 tttgcc 151751 Score = 65.9 bits (33), Expect = 7e-08 Identities = 64/73 (87%), Gaps = 1/73 (1%) Strand = Plus / Minus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| ||||||| ||||||||||| || || ||||||||| |||| || ||||| Sbjct: 152870 agcattacactgaacaaa-aatgctgtctttggggatagcagtgcaatgtcacctggtgg 152812 Query: 62 tgtccgcattggt 74 ||||||||||||| Sbjct: 152811 tgtccgcattggt 152799
>emb|AL954826.3|CNS08CD2 Oryza sativa chromosome 12, . BAC OSJNBb0080P14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132241 Score = 139 bits (70), Expect = 6e-30 Identities = 157/186 (84%) Strand = Plus / Minus Query: 78 cctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgagttcctc 137 ||||| ||||| || |||||| |||| ||| ||||||| | ||||||||||||||||| Sbjct: 39049 cctgccatgacatcaaggggtttggtagaggaggactttgtacagatcgccgagttcctt 38990 Query: 138 caccaggcagtgaccatctgcctgaacatccagaaggagcacgggaagctgctcaaggac 197 ||||||||||||||||||||| || | | |||||||||| || ||||| |||||| || Sbjct: 38989 caccaggcagtgaccatctgcttggatgttcagaaggagcgtggcaagcttctcaagtac 38930 Query: 198 ttctccaagggcctggtgaacaacaaggacattgagaacctcaaggtcgaggtcgagaag 257 ||| | ||||||||| ||||||||||||||||||| |||||| || ||||| |||||| Sbjct: 38929 ttcaacgagggcctggagaacaacaaggacattgaggacctcagggcggaggtggagaag 38870 Query: 258 tttgcc 263 |||||| Sbjct: 38869 tttgcc 38864 Score = 65.9 bits (33), Expect = 7e-08 Identities = 64/73 (87%), Gaps = 1/73 (1%) Strand = Plus / Minus Query: 2 agcattacattgaacaagtaatgctgtcttcggtgacagcagtgcattgtccccgggtgg 61 ||||||||| ||||||| ||||||||||| || || ||||||||| |||| || ||||| Sbjct: 39983 agcattacactgaacaaa-aatgctgtctttggggatagcagtgcaatgtcacctggtgg 39925 Query: 62 tgtccgcattggt 74 ||||||||||||| Sbjct: 39924 tgtccgcattggt 39912
>dbj|AB154528.1| Cucumis melo 6F11 mRNA for hypothetical protein, partial cds Length = 963 Score = 101 bits (51), Expect = 1e-18 Identities = 204/255 (80%) Strand = Plus / Plus Query: 33 ggtgacagcagtgcattgtccccgggtggtgtccgcattggtgctcctgctatgacctcc 92 |||||||||||||||||| | || || |||||| | || ||||| ||||| ||||| || Sbjct: 690 ggtgacagcagtgcattgactcccggaggtgtcagaatcggtgcacctgccatgacttca 749 Query: 93 aggggtctggttgagaaggacttcgagcagatcgccgagttcctccaccaggcagtgacc 152 || ||| |||| ||||| |||||||| |||||||| |||||||| |||| || || ||| Sbjct: 750 agaggtttggtagagaaagacttcgaacagatcgcggagttcctgcaccgtgctgtaacc 809 Query: 153 atctgcctgaacatccagaaggagcacgggaagctgctcaaggacttctccaagggcctg 212 ||| | |||||||||||||||| | || |||||| | ||||||||| |||||| || Sbjct: 810 atcaccttgaacatccagaaggaatatggaaagctgttgaaggacttcaacaagggtctt 869 Query: 213 gtgaacaacaaggacattgagaacctcaaggtcgaggtcgagaagtttgccctctccttt 272 || ||||||||||| || || | ||||||| || |||||||| ||| || ||| || Sbjct: 870 gtaaacaacaaggaaatcgaagagctcaaggctgatgtcgagaaattttccggctctttc 929 Query: 273 gacatgcccggcttc 287 |||||||| |||||| Sbjct: 930 gacatgccaggcttc 944
>gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2) gene, complete cds Length = 68460 Score = 83.8 bits (42), Expect = 3e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 72 ggtgctcctgctatgacctccaggggtctggttgagaaggacttcgagcagatcgccgag 131 ||||| || |||||||| ||||||||| ||||||||||||||||||||||||| || ||| Sbjct: 20975 ggtgccccagctatgacttccaggggtttggttgagaaggacttcgagcagattgcagag 20916 Query: 132 ttcctccacc 141 ||||| |||| Sbjct: 20915 ttccttcacc 20906
>gb|BC108318.1| Homo sapiens ligase I, DNA, ATP-dependent, mRNA (cDNA clone MGC:117397 IMAGE:6141535), complete cds Length = 3421 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 2524 aaggacatcgagcagatcgccgagttcct 2552
>ref|XM_524321.1| PREDICTED: Pan troglodytes DNA ligase I (LOC468936), mRNA Length = 4041 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 3049 aaggacgtcgagcagatcgccgagttcct 3077
>gb|AF527418.1| Homo sapiens ligase I, DNA, ATP-dependent (LIG1) gene, complete cds Length = 56408 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 47992 aaggacatcgagcagatcgccgagttcct 48020
>emb|CR619348.1| full-length cDNA clone CS0DJ001YC06 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1500 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 756 aaggacatcgagcagatcgccgagttcct 784
>emb|CR599472.1| full-length cDNA clone CS0DJ009YF03 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1637 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 826 aaggacatcgagcagatcgccgagttcct 854
>gb|AC010458.6| Homo sapiens chromosome 19 clone CTD-2265M8, complete sequence Length = 105788 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 7615 aaggacatcgagcagatcgccgagttcct 7643
>gb|AC011466.6| Homo sapiens chromosome 19 clone CTC-453G23, complete sequence Length = 167272 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 40809 aaggacatcgagcagatcgccgagttcct 40781
>gb|BC110622.1| Homo sapiens ligase I, DNA, ATP-dependent, mRNA (cDNA clone MGC:130025 IMAGE:40035687), complete cds Length = 3965 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 2173 aaggacatcgagcagatcgccgagttcct 2201
>ref|NM_000234.1| Homo sapiens ligase I, DNA, ATP-dependent (LIG1), mRNA Length = 3083 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 2224 aaggacatcgagcagatcgccgagttcct 2252
>dbj|AB208791.1| Homo sapiens mRNA for DNA ligase I variant protein Length = 4102 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 2244 aaggacatcgagcagatcgccgagttcct 2272
>gb|M36067.1|HUMLIGAA Human DNA ligase I mRNA, complete cds Length = 3083 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 108 aaggacttcgagcagatcgccgagttcct 136 |||||| |||||||||||||||||||||| Sbjct: 2224 aaggacatcgagcagatcgccgagttcct 2252
>ref|XM_779683.1| PREDICTED: Strongylocentrotus purpuratus similar to serine hydroxymethyltransferase 2 (mitochondrial) (LOC579575), mRNA Length = 1847 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Plus Query: 69 attggtgctcctgctatgacctc 91 ||||||||||||||||||||||| Sbjct: 1313 attggtgctcctgctatgacctc 1335
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 cttcgagcagatcgccgagttc 134 |||||||||||||||||||||| Sbjct: 3440555 cttcgagcagatcgccgagttc 3440576
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 cttcgagcagatcgccgagttc 134 |||||||||||||||||||||| Sbjct: 2659668 cttcgagcagatcgccgagttc 2659689
>ref|NM_137344.2| Drosophila melanogaster CG30456-RA (CG30456), mRNA Length = 2386 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 tcgagcagatcgccgagttcc 135 ||||||||||||||||||||| Sbjct: 1041 tcgagcagatcgccgagttcc 1061
>gb|AC099032.1| Drosophila melanogaster, chromosome 2R, region 53F-54A, BAC clone BACR32P08, complete sequence Length = 163072 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 tcgagcagatcgccgagttcc 135 ||||||||||||||||||||| Sbjct: 113447 tcgagcagatcgccgagttcc 113467
>gb|AC007520.8|AC007520 Drosophila melanogaster, chromosome 2R, region 53D-54A, BAC clone BACR11M15, complete sequence Length = 170994 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 tcgagcagatcgccgagttcc 135 ||||||||||||||||||||| Sbjct: 37614 tcgagcagatcgccgagttcc 37634
>gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46 of 73 of the complete sequence Length = 260337 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 tcgagcagatcgccgagttcc 135 ||||||||||||||||||||| Sbjct: 100739 tcgagcagatcgccgagttcc 100759
>ref|NM_117463.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT4G13890 mRNA, complete cds Length = 1592 Score = 40.1 bits (20), Expect = 3.8 Identities = 53/64 (82%) Strand = Plus / Plus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||| || || |||| ||| || | ||||||||| |||||| |||||||||||| Sbjct: 1267 acatccaggagcagtacggtaaggtgatgaaggacttcaacaagggtttggtgaacaaca 1326 Query: 223 agga 226 |||| Sbjct: 1327 agga 1330
>ref|XM_510545.1| PREDICTED: Pan troglodytes similar to transmembrane channel-like 3 (LOC453589), mRNA Length = 4479 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 1932 ggcagtgaccatctgcctga 1951
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 acctcaaggtcgaggtcgag 254 |||||||||||||||||||| Sbjct: 43727 acctcaaggtcgaggtcgag 43746
>ref|XM_455485.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F08921g predicted mRNA Length = 1410 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 57 ggtggtgtccgcattggtgctcctgctatgac 88 ||||||||||| || |||||||| |||||||| Sbjct: 1168 ggtggtgtccgtatcggtgctccagctatgac 1199
>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence Length = 357655 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 caacaaggacattgagaacc 237 |||||||||||||||||||| Sbjct: 235805 caacaaggacattgagaacc 235786
>ref|XM_774258.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_165_11606_4440) partial mRNA Length = 7167 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 atccagaaggagcacgggaagctg 188 ||||||||| |||||||||||||| Sbjct: 1753 atccagaagcagcacgggaagctg 1776
>ref|XM_545878.2| PREDICTED: Canis familiaris similar to transmembrane channel-like gene family 3 (LOC488760), mRNA Length = 3399 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 936 ggcagtgaccatctgcctga 955
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 agcagatcgccgagttcctc 137 |||||||||||||||||||| Sbjct: 3072618 agcagatcgccgagttcctc 3072599
>gb|AY236490.1| Homo sapiens transmembrane channel-like protein 3 (TMC3) mRNA, complete cds Length = 2442 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 1014 ggcagtgaccatctgcctga 1033
>emb|AL137848.5| Human DNA sequence from clone RP11-77D6 on chromosome 9q31.1-32 Contains part of a novel gene, the OGN gene for osteoglycin (osteoinductive factor, mimecan), the OMD gene for osteomodulin, the ASPN gene for asporin (LRR class 1) and the 3' end of the ECM2 gene for extracellular matrix protein 2 (female organ and adipocyte specific), complete sequence Length = 152341 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 ttcctccaccaggcagtgaccatc 155 ||||||| |||||||||||||||| Sbjct: 61951 ttcctcccccaggcagtgaccatc 61928
>gb|AY263163.1| Homo sapiens TMC3 protein (TMC3) mRNA, complete cds Length = 4746 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 975 ggcagtgaccatctgcctga 994
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 3.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 57 ggtggtgtccgcattggtgctcctgctatgac 88 ||||||||||| || |||||||| |||||||| Sbjct: 829243 ggtggtgtccgtatcggtgctccagctatgac 829212
>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37 Length = 199667 Score = 40.1 bits (20), Expect = 3.8 Identities = 53/64 (82%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||| || || |||| ||| || | ||||||||| |||||| |||||||||||| Sbjct: 124405 acatccaggagcagtacggtaaggtgatgaaggacttcaacaagggtttggtgaacaaca 124346 Query: 223 agga 226 |||| Sbjct: 124345 agga 124342
>emb|AL035528.2|ATF18A5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project) Length = 118718 Score = 40.1 bits (20), Expect = 3.8 Identities = 53/64 (82%) Strand = Plus / Minus Query: 163 acatccagaaggagcacgggaagctgctcaaggacttctccaagggcctggtgaacaaca 222 |||||||| || || |||| ||| || | ||||||||| |||||| |||||||||||| Sbjct: 103313 acatccaggagcagtacggtaaggtgatgaaggacttcaacaagggtttggtgaacaaca 103254 Query: 223 agga 226 |||| Sbjct: 103253 agga 103250
>emb|BX640632.1|HSM806678 Homo sapiens mRNA; cDNA DKFZp686L09244 (from clone DKFZp686L09244) Length = 11482 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 1072 ggcagtgaccatctgcctga 1091
>gb|AC103858.2| Homo sapiens chromosome 15, clone RP11-761I4, complete sequence Length = 194996 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 167510 ggcagtgaccatctgcctga 167491
>gb|AC109809.3| Homo sapiens chromosome 15, clone CTD-2240J17, complete sequence Length = 116491 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 76568 ggcagtgaccatctgcctga 76587
>ref|XM_937643.1| PREDICTED: Homo sapiens transmembrane channel-like 3 (TMC3), mRNA Length = 3303 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 936 ggcagtgaccatctgcctga 955
>ref|XM_930010.1| PREDICTED: Homo sapiens transmembrane channel-like 3 (TMC3), mRNA Length = 3303 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcagtgaccatctgcctga 162 |||||||||||||||||||| Sbjct: 936 ggcagtgaccatctgcctga 955
>dbj|AB009589.1| Homo sapiens gene for Osteomodulin, complete cds Length = 12414 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ttcctccaccaggcagtgaccatc 155 ||||||| |||||||||||||||| Sbjct: 7475 ttcctcccccaggcagtgaccatc 7498 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,416,743 Number of Sequences: 3902068 Number of extensions: 2416743 Number of successful extensions: 47104 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46806 Number of HSP's gapped (non-prelim): 297 length of query: 291 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 269 effective length of database: 17,147,199,772 effective search space: 4612596738668 effective search space used: 4612596738668 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)