ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags35e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPOB_CHAGL (Q8MA12) DNA-directed RNA polymerase beta chain (EC 2... 35 0.053
2RPOB_CHLPN (Q9Z9A0) DNA-directed RNA polymerase beta chain (EC 2... 30 1.3
3RPOB_NYMAL (Q6EW56) DNA-directed RNA polymerase beta chain (EC 2... 30 1.3
4RPOB_PARUW (Q6MDM1) DNA-directed RNA polymerase beta chain (EC 2... 30 1.3
5RPOB_CHLTR (O84317) DNA-directed RNA polymerase beta chain (EC 2... 30 2.2
6RPOB_CHLTA (Q3KM47) DNA-directed RNA polymerase beta chain (EC 2... 30 2.2
7RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2... 30 2.2
8RPOB_CHLCV (Q822J1) DNA-directed RNA polymerase beta chain (EC 2... 30 2.2
9RPOB_CHLAB (Q5L5I3) DNA-directed RNA polymerase beta chain (EC 2... 30 2.2
10JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylatio... 30 2.2
11RPOBC_WOLSU (Q7MA56) Bifunctional DNA-directed RNA polymerase, b... 30 2.2
12RPOB_SACOF (Q6ENX3) DNA-directed RNA polymerase beta chain (EC 2... 29 2.9
13RPOB_SACHY (Q6L3A7) DNA-directed RNA polymerase beta chain (EC 2... 29 2.9
14RPOB_ORYSA (P12091) DNA-directed RNA polymerase beta chain (EC 2... 29 2.9
15RPOB_ORYNI (Q6ENI4) DNA-directed RNA polymerase beta chain (EC 2... 29 2.9
16RPOB_MAIZE (P16023) DNA-directed RNA polymerase beta chain (EC 2... 29 2.9
17RPOB_WHEAT (Q9XPS7) DNA-directed RNA polymerase beta chain (EC 2... 29 2.9
18RPOB_TOBAC (P06271) DNA-directed RNA polymerase beta chain (EC 2... 29 3.8
19RPOB_SOLTU (Q2VEI4) DNA-directed RNA polymerase beta chain (EC 2... 29 3.8
20RPOB_NICTO (Q33C46) DNA-directed RNA polymerase beta chain (EC 2... 29 3.8
21RPOB_NICSY (Q3C1G7) DNA-directed RNA polymerase beta chain (EC 2... 29 3.8
22RPOB_ATRBE (Q8S8X9) DNA-directed RNA polymerase beta chain (EC 2... 29 3.8
23RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2... 29 3.8
24RPOB_CHLTE (Q8KG15) DNA-directed RNA polymerase beta chain (EC 2... 28 4.9
25RPOB_LACSS (Q38UQ2) DNA-directed RNA polymerase beta chain (EC 2... 28 4.9
26RPOB_PHYPA (P60283) DNA-directed RNA polymerase beta chain (EC 2... 28 4.9
27RPOB_LOTJA (Q9BBS9) DNA-directed RNA polymerase beta chain (EC 2... 28 6.4
28RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2... 28 6.4
29MSHR_CALJA (Q864H7) Melanocyte-stimulating hormone receptor (MSH... 28 6.4
30MSHR_CALGE (Q864H8) Melanocyte-stimulating hormone receptor (MSH... 28 6.4
31PYRD_XANCP (Q8P9R0) Dihydroorotate dehydrogenase (EC 1.3.3.1) (D... 28 6.4
32RPOB_LACSA (Q56P13) DNA-directed RNA polymerase beta chain (EC 2... 28 6.4
33RPOB_DEHE1 (Q3Z8V4) DNA-directed RNA polymerase beta chain (EC 2... 28 6.4
34RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2... 28 6.4
35RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2... 28 6.4
36RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2... 28 8.4
37RPOB_AMBTC (P60282) DNA-directed RNA polymerase beta chain (EC 2... 28 8.4
38RPOB_ADICA (Q85FM7) DNA-directed RNA polymerase beta chain (EC 2... 28 8.4
39RPOB_ACOGR (Q5QA72) DNA-directed RNA polymerase beta chain (EC 2... 28 8.4
40RPOB_SPICI (P47767) DNA-directed RNA polymerase beta chain (EC 2... 28 8.4
41MSHR_CALGO (Q864H6) Melanocyte-stimulating hormone receptor (MSH... 28 8.4
42RPOB_ACOCL (Q3V542) DNA-directed RNA polymerase beta chain (EC 2... 28 8.4 
>RPOB_CHAGL (Q8MA12) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1070

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 22   HDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            HD P     +SI  +  P   P  + VGQ+LE  L  AG+    +   +P   R+
Sbjct: 837  HDMPYLQNGTSIDMVLSPLGVPSRMNVGQILECLLGFAGKFLNKNYRITPFDERY 891
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>RPOB_CHLPN (Q9Z9A0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1252

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            D P  +   ++  I  P   P  + +GQ+LE+ L  A + AG  V T
Sbjct: 1046 DMPYLSNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKT 1092
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>RPOB_NYMAL (Q6EW56) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1071

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ E +L +AG + G     +P   R+
Sbjct: 839  DMPYLQDGTPVDMVFNPLGVPSRMNVGQMFECSLGLAGDLLGRHYRITPFDERY 892
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>RPOB_PARUW (Q6MDM1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1254

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            D P  +T  +I  I  P   P  + +GQL E+ L +A +  G +V +
Sbjct: 1047 DMPFLSTGQTIEIILNPLGVPSRMNMGQLFETHLGIAAKHTGITVKS 1093
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>RPOB_CHLTR (O84317) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1252

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            D P      ++  I  P   P  + +GQ+LE+ L  A + AG  V T
Sbjct: 1046 DMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKT 1092
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>RPOB_CHLTA (Q3KM47) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1252

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            D P      ++  I  P   P  + +GQ+LE+ L  A + AG  V T
Sbjct: 1046 DMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKT 1092
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>RPOB_CHLMU (P56869) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1252

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            D P      ++  I  P   P  + +GQ+LE+ L  A + AG  V T
Sbjct: 1046 DMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKT 1092
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>RPOB_CHLCV (Q822J1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1252

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            D P      ++  I  P   P  + +GQ+LE+ L  A + AG  V T
Sbjct: 1046 DMPYLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIHVKT 1092
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>RPOB_CHLAB (Q5L5I3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1252

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            D P      ++  I  P   P  + +GQ+LE+ L  A + AG  V T
Sbjct: 1046 DMPYLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIHVKT 1092
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>JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylation protein 1B (EC|
            1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and
            leucine-rich repeat protein 10)
          Length = 1259

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 32   QLQILLAPYPRLRFLNLLPVSWVLVSCLNRRCM*LARLQGHQFL 163
            QL  L+   P LR LNL   SW+ VS L   C  L R    Q++
Sbjct: 1063 QLSWLINRLPALRDLNLSGCSWIAVSALCSSCCPLLRTLNVQWV 1106
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>RPOBC_WOLSU (Q7MA56) Bifunctional DNA-directed RNA polymerase, beta and beta'|
            chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase
            beta chain (Transcriptase beta chain) (RNA polymerase
            beta subunit); DNA-directed RNA polymerase beta' chain
            (Transcri
          Length = 2883

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVS 162
            D P T     +  +  P   P  + +GQ+LE  L + G+  GA ++
Sbjct: 1114 DMPYTKDGEPVEIVLNPLGVPSRMNIGQILEVHLGLVGKKLGAQIN 1159
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>RPOB_SACOF (Q6ENX3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1075

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ ES+L +AG +       +P   R+
Sbjct: 843  DMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERY 896
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>RPOB_SACHY (Q6L3A7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1075

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ ES+L +AG +       +P   R+
Sbjct: 843  DMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERY 896
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>RPOB_ORYSA (P12091) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1075

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ ES+L +AG +       +P   R+
Sbjct: 843  DMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERY 896
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>RPOB_ORYNI (Q6ENI4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1075

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ ES+L +AG +       +P   R+
Sbjct: 843  DMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERY 896
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>RPOB_MAIZE (P16023) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1075

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ ES+L +AG +       +P   R+
Sbjct: 843  DMPYLQDGAPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERY 896
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>RPOB_WHEAT (Q9XPS7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1076

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ ES+L +AG +       +P   R+
Sbjct: 844  DMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERY 897
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>RPOB_TOBAC (P06271) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1070

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 25  DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
           D P      S+  +  P   P  + VGQ+ E +L +AG +       +P   R+
Sbjct: 838 DMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERY 891
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>RPOB_SOLTU (Q2VEI4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1070

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 25  DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
           D P      S+  +  P   P  + VGQ+ E +L +AG +       +P   R+
Sbjct: 838 DMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERY 891
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>RPOB_NICTO (Q33C46) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1070

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 25  DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
           D P      S+  +  P   P  + VGQ+ E +L +AG +       +P   R+
Sbjct: 838 DMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERY 891
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>RPOB_NICSY (Q3C1G7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1070

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 25  DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
           D P      S+  +  P   P  + VGQ+ E +L +AG +       +P   R+
Sbjct: 838 DMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERY 891
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>RPOB_ATRBE (Q8S8X9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1070

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 25  DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
           D P      S+  +  P   P  + VGQ+ E +L +AG +       +P   R+
Sbjct: 838 DMPYLQDGRSVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERY 891
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>RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1284

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 19   LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            + D P     + +  +  PQ  P  + +GQ+LE  L +A +  G  ++T
Sbjct: 1016 VEDMPHLEDGTPVDILLNPQGIPSRMNIGQILEIHLGMAAKKLGVKIAT 1064
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>RPOB_CHLTE (Q8KG15) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1303

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 19   LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            + D P     + +  +  P   P  + +GQL E++L  AG+  G    T
Sbjct: 1095 IEDMPFMEDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKKLGVKFKT 1143
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>RPOB_LACSS (Q38UQ2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1197

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            D P T   + +  +  P   P  + +GQ+LE  L +A +  G  V+T
Sbjct: 940  DMPYTPDGTPVDILLSPMGVPSRMNIGQVLELHLGMAARNLGIHVAT 986
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>RPOB_PHYPA (P60283) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1085

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + I  +  P   P  + VGQ+ E  L +AG   G     +P   ++
Sbjct: 853  DMPYLQDGTPIDMVLSPLGVPSRMNVGQIFECLLGLAGYFLGKHYRITPFDEKY 906
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>RPOB_LOTJA (Q9BBS9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1070

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +1

Query: 25  DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
           D P       +  +  P   P  + VGQ+ E +L +AG V       +P   R+
Sbjct: 838 DMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGDVLDRHYRIAPFDERY 891
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>RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1273

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 19   LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            + D P     + +  +  P   P  + +GQ+LE+ L  AG + G  V+T
Sbjct: 910  VEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLGFRVAT 958
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>MSHR_CALJA (Q864H7) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 344

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  ICSPCPGCWSVA*IGAACSWPG-CRGISFYLPP 173
           +CS  PGCW+    G    WPG C  +   LPP
Sbjct: 314 LCSSWPGCWAEG--GGDSVWPGSCVTLRGPLPP 344
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>MSHR_CALGE (Q864H8) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 344

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  ICSPCPGCWSVA*IGAACSWPG-CRGISFYLPP 173
           +CS  PGCW+    G    WPG C  +   LPP
Sbjct: 314 LCSSWPGCWAEG--GGDSVWPGSCVTLRGPLPP 344
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>PYRD_XANCP (Q8P9R0) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 351

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 13  GGLHDSPITNTASSISK---ITLPQSAPRVLGVGQLLESALHVAGQVAGASV 159
           GGL  +P+   ++ + +     LP+S P ++GVG +   A  VA   AGAS+
Sbjct: 264 GGLSGAPLLGQSTLVLRRLRARLPESIP-LIGVGGITSGADAVAKMAAGASL 314
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>RPOB_LACSA (Q56P13) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1060

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 25  DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
           D P       +  +  P   P  + VGQ+ ES+L +AG +       +P   R+
Sbjct: 828 DMPYLQDGRPVDMVFNPLGVPSRMNVGQIFESSLGLAGGLLDRHYRIAPFDERY 881
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>RPOB_DEHE1 (Q3Z8V4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1272

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 19   LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            + D P     + +  +  P   P  + +GQ+LE+ L  AG + G  V+T
Sbjct: 910  VEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLGFRVAT 958
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>RPOB_BORGA (Q661M9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1155

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 19   LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGAS 156
            + D P     + +     P   P  + +GQL+ES L +AG+  G S
Sbjct: 931  VEDMPYLADGTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGES 976
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>RPOB_BORBU (Q59191) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1155

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 19   LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGAS 156
            + D P     + +     P   P  + +GQL+ES L +AG+  G S
Sbjct: 931  VEDMPYLADGTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGES 976
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>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1120

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +1

Query: 19   LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSP 171
            L D P     + +  I  P   P  + VGQL E  L +AG+ +       P
Sbjct: 875  LQDMPFLPDGTPVDIILNPLGVPSRMNVGQLFECLLGLAGEYSSKRFKIIP 925
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>RPOB_AMBTC (P60282) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1078

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ E +L +AG +       +P   R+
Sbjct: 846  DMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRITPFDERY 899
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>RPOB_ADICA (Q85FM7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1071

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  I  P   P  + VGQ+ E  L +AG+         P   R+
Sbjct: 839  DMPYLQNGTPVDMILSPLGVPSRMNVGQIFECLLGLAGEFLETHYRVVPFDERY 892
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>RPOB_ACOGR (Q5QA72) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1071

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ E +L +AG +       +P   R+
Sbjct: 839  DMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERY 892
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>RPOB_SPICI (P47767) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1302

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 19   LHDSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVST 165
            L D P     + +  +  P   P  + +GQ+LE  L +A +  G  +ST
Sbjct: 1008 LEDMPHMEDGTPVDIMLNPLGVPSRMNIGQVLEIHLGMAAKKLGQKIST 1056
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>MSHR_CALGO (Q864H6) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 344

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  ICSPCPGCWSVA*IGAACSWPG-CRGISFYLPP 173
           +CS  PGCW+    G    WPG C  +   LPP
Sbjct: 314 LCSRWPGCWAEG--GGDSVWPGSCVTLRGPLPP 344
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>RPOB_ACOCL (Q3V542) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta subunit) (RNA
            polymerase beta subunit)
          Length = 1083

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +1

Query: 25   DSPITNTASSISKITLPQSAPRVLGVGQLLESALHVAGQVAGASVSTSPLSIRH 186
            D P     + +  +  P   P  + VGQ+ E +L +AG +       +P   R+
Sbjct: 851  DMPYLQDGTPVDMVFNPLGVPSRMNVGQIFECSLGLAGDLLDRHYRIAPFDERY 904


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,639,700
Number of Sequences: 219361
Number of extensions: 749195
Number of successful extensions: 2047
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2047
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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