ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags35e01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136H15, full insert sequence Length = 3559 Score = 172 bits (87), Expect = 3e-40 Identities = 181/211 (85%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 11 atggtgggttgcatgattcaccaattacaaatactgctagctccatatccaagattacgc 70 |||||||||||||||| |||||||||||||| || | |||||| ||||| |||| |||| Sbjct: 2843 atggtgggttgcatgagtcaccaattacaaacaccggtagctcgatatcaaagactacga 2902 Query: 71 ttcctcaatctgctccccgtgtcctgggtgttggtcagttgcttgaatcggcgctgcatg 130 | || ||||||| ||| |||||| | |||||||| |||||||||||||||||| | |||| Sbjct: 2903 tgccacaatctgttcctcgtgtcttaggtgttggccagttgcttgaatcggcgttacatg 2962 Query: 131 tagctggccaggttgcaggggcatcagtttctacctcccccctttccatacggcacaatg 190 |||| ||||| ||||| || ||||| ||||| |||||||| | | ||||||||||||||| Sbjct: 2963 tagccggccaagttgcgggagcatctgtttcgacctccccgc-tcccatacggcacaatg 3021 Query: 191 actagtcaatgtgaggccctgggatcaggca 221 || |||||||| || ||| |||||||||||| Sbjct: 3022 accagtcaatgcgaagccttgggatcaggca 3052
>dbj|AK062228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D02, full insert sequence Length = 1433 Score = 172 bits (87), Expect = 3e-40 Identities = 181/211 (85%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 11 atggtgggttgcatgattcaccaattacaaatactgctagctccatatccaagattacgc 70 |||||||||||||||| |||||||||||||| || | |||||| ||||| |||| |||| Sbjct: 661 atggtgggttgcatgagtcaccaattacaaacaccggtagctcgatatcaaagactacga 720 Query: 71 ttcctcaatctgctccccgtgtcctgggtgttggtcagttgcttgaatcggcgctgcatg 130 | || ||||||| ||| |||||| | |||||||| |||||||||||||||||| | |||| Sbjct: 721 tgccacaatctgttcctcgtgtcttaggtgttggccagttgcttgaatcggcgttacatg 780 Query: 131 tagctggccaggttgcaggggcatcagtttctacctcccccctttccatacggcacaatg 190 |||| ||||| ||||| || ||||| ||||| |||||||| | | ||||||||||||||| Sbjct: 781 tagccggccaagttgcgggagcatctgtttcgacctccccgc-tcccatacggcacaatg 839 Query: 191 actagtcaatgtgaggccctgggatcaggca 221 || |||||||| || ||| |||||||||||| Sbjct: 840 accagtcaatgcgaagccttgggatcaggca 870
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 9e-19 Identities = 96/111 (86%) Strand = Plus / Minus Query: 11 atggtgggttgcatgattcaccaattacaaatactgctagctccatatccaagattacgc 70 |||||||||||||||| |||||||||||||| || | |||||| ||||| |||| |||| Sbjct: 10943669 atggtgggttgcatgagtcaccaattacaaacaccggtagctcgatatcaaagactacga 10943610 Query: 71 ttcctcaatctgctccccgtgtcctgggtgttggtcagttgcttgaatcgg 121 | || ||||||| ||| |||||| | |||||||| |||||||||||||||| Sbjct: 10943609 tgccacaatctgttcctcgtgtcttaggtgttggccagttgcttgaatcgg 10943559 Score = 77.8 bits (39), Expect = 1e-11 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 127 catgtagctggccaggttgcaggggcatcagtttctacctcccccctttccatacggcac 186 |||||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| Sbjct: 10943311 catgtagccggccaagttgcgggagcatctgtttcgacctccccgctc-ccatacggcac 10943253 Query: 187 aatgactagtcaatgtgaggccctgggatcaggca 221 |||||| |||||||| || ||| |||||||||||| Sbjct: 10943252 aatgaccagtcaatgcgaagccttgggatcaggca 10943218
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 101 bits (51), Expect = 9e-19 Identities = 96/111 (86%) Strand = Plus / Plus Query: 11 atggtgggttgcatgattcaccaattacaaatactgctagctccatatccaagattacgc 70 |||||||||||||||| |||||||||||||| || | |||||| ||||| |||| |||| Sbjct: 37360 atggtgggttgcatgagtcaccaattacaaacaccggtagctcgatatcaaagactacga 37419 Query: 71 ttcctcaatctgctccccgtgtcctgggtgttggtcagttgcttgaatcgg 121 | || ||||||| ||| |||||| | |||||||| |||||||||||||||| Sbjct: 37420 tgccacaatctgttcctcgtgtcttaggtgttggccagttgcttgaatcgg 37470 Score = 77.8 bits (39), Expect = 1e-11 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 127 catgtagctggccaggttgcaggggcatcagtttctacctcccccctttccatacggcac 186 |||||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| Sbjct: 37718 catgtagccggccaagttgcgggagcatctgtttcgacctccccgctc-ccatacggcac 37776 Query: 187 aatgactagtcaatgtgaggccctgggatcaggca 221 |||||| |||||||| || ||| |||||||||||| Sbjct: 37777 aatgaccagtcaatgcgaagccttgggatcaggca 37811
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 9e-19 Identities = 96/111 (86%) Strand = Plus / Minus Query: 11 atggtgggttgcatgattcaccaattacaaatactgctagctccatatccaagattacgc 70 |||||||||||||||| |||||||||||||| || | |||||| ||||| |||| |||| Sbjct: 10941770 atggtgggttgcatgagtcaccaattacaaacaccggtagctcgatatcaaagactacga 10941711 Query: 71 ttcctcaatctgctccccgtgtcctgggtgttggtcagttgcttgaatcgg 121 | || ||||||| ||| |||||| | |||||||| |||||||||||||||| Sbjct: 10941710 tgccacaatctgttcctcgtgtcttaggtgttggccagttgcttgaatcgg 10941660 Score = 77.8 bits (39), Expect = 1e-11 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 127 catgtagctggccaggttgcaggggcatcagtttctacctcccccctttccatacggcac 186 |||||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| Sbjct: 10941412 catgtagccggccaagttgcgggagcatctgtttcgacctccccgctc-ccatacggcac 10941354 Query: 187 aatgactagtcaatgtgaggccctgggatcaggca 221 |||||| |||||||| || ||| |||||||||||| Sbjct: 10941353 aatgaccagtcaatgcgaagccttgggatcaggca 10941319
>gb|AY103935.1| Zea mays PCO086397 mRNA sequence Length = 1672 Score = 89.7 bits (45), Expect = 3e-15 Identities = 154/189 (81%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 14 gtgggttgcatgattcaccaattacaaatactgctagctccatatccaagattacgcttc 73 |||| ||||| || |||||||| || || ||||||||||| || || |||||||| || | Sbjct: 1485 gtggcttgcacgagtcaccaatcaccaacactgctagctctatctcaaagattactctac 1544 Query: 74 ctcaatctgctccccgtgtcctgggtgttggtcagttgcttgaatcggcgctgcatgtag 133 | || |||| ||| | ||| | ||||| ||||| ||| | ||||| || || ||||| | Sbjct: 1545 cacagtctgttccacatgttttaggtgtcggtcaattgttggaatcagcactacatgtgg 1604 Query: 134 ctggccaggttgcaggggcatcagtttctacctcccccctttccatacggcacaatgact 193 |||||||||||||||| ||||| ||||| ||||| || | ||||||| || ||||||||| Sbjct: 1605 ctggccaggttgcaggtgcatctgtttcaacctcacctc-ttccatatggtacaatgact 1663 Query: 194 agtcaatgt 202 ||||||||| Sbjct: 1664 agtcaatgt 1672
>emb|BX470096.16| Zebrafish DNA sequence from clone DKEY-163O15 in linkage group 19, complete sequence Length = 111728 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 tgggttgcatgattcaccaat 35 ||||||||||||||||||||| Sbjct: 76285 tgggttgcatgattcaccaat 76265
>gb|AF201337.4| Homo sapiens chromosome 8 clone GS1-44D20 map q13.3, complete sequence Length = 93479 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 tccatatccaagattacgcttcct 75 ||||||||||||||||| |||||| Sbjct: 35203 tccatatccaagattactcttcct 35180
>gb|AC009808.8| Homo sapiens chromosome 8, clone RP11-138K8, complete sequence Length = 173805 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 tccatatccaagattacgcttcct 75 ||||||||||||||||| |||||| Sbjct: 88781 tccatatccaagattactcttcct 88758 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,505,884 Number of Sequences: 3902068 Number of extensions: 1505884 Number of successful extensions: 104146 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104070 Number of HSP's gapped (non-prelim): 72 length of query: 221 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 199 effective length of database: 17,147,199,772 effective search space: 3412292754628 effective search space used: 3412292754628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
