Clone Information

BLAST Search Result

Clone Name	bags34o14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_478211.1\| Oryza sativa (japonica cultivar-group), mRNA	553	e-154
2	ref\|XM_506350.1\| PREDICTED Oryza sativa (japonica cultivar-group...	553	e-154
3	dbj\|AK065801.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	553	e-154
4	dbj\|AK064866.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	553	e-154
5	dbj\|AK061706.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	553	e-154
6	gb\|AY107471.1\| Zea mays PCO115183 mRNA sequence	438	e-120
7	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
8	dbj\|AP003956.5\| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
9	gb\|U01162.1\|U01162 Amaranthus hypochondriacus C4 photosynthetic ...	92	2e-15
10	emb\|Z23023.1\|STMALDEHB S.tuberosum mRNA for precursor of the mit...	48	0.023
11	emb\|Z23002.1\|MIST59KD S.tuberosum mitochondrial gene for the 59k...	46	0.090
12	emb\|AL731688.14\| Mouse DNA sequence from clone RP23-291K6 on chr...	44	0.36
13	ref\|NM_197228.1\| Oryza sativa (japonica cultivar-group) putative...	42	1.4
14	gb\|AC153579.10\| Mus musculus 6 BAC RP23-21F2 (Roswell Park Cance...	42	1.4
15	dbj\|AK101024.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.4
16	dbj\|AK070828.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.4
17	emb\|AL929142.6\| Mouse DNA sequence from clone RP23-340A13 on chr...	42	1.4
18	ref\|NM_126936.2\| Arabidopsis thaliana malic enzyme/ oxidoreducta...	40	5.6
19	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	5.6
20	ref\|XM_460336.1\| Debaryomyces hansenii CBS767 hypothetical prote...	40	5.6
21	emb\|CT005236.2\| Pan troglodytes chromosome X clone RP43-010E09 m...	40	5.6
22	gb\|BT000996.1\| Arabidopsis thaliana clone U19925 putative malate...	40	5.6
23	gb\|AC123065.3\| Mus musculus BAC clone RP23-239F13 from 9, comple...	40	5.6
24	gb\|AC134049.24\| Medicago truncatula clone mth2-21j3, complete se...	40	5.6
25	gb\|AC162370.4\| Mus musculus chromosome 7, clone RP23-32F4, compl...	40	5.6
26	emb\|AL160032.14\| Human DNA sequence from clone RP11-474L7 on chr...	40	5.6
27	emb\|AL138717.6\| Human DNA sequence from clone RP11-11D8 on chrom...	40	5.6
28	gb\|AY091108.1\| Arabidopsis thaliana putative malate oxidoreducta...	40	5.6
29	emb\|CR382137.1\| Debaryomyces hansenii chromosome E of strain CBS...	40	5.6
30	gb\|AC153967.5\| Mus musculus 10 BAC RP24-372A5 (Roswell Park Canc...	40	5.6
31	gb\|CP000239.1\| Synechococcus sp. JA-3-3Ab, complete genome	40	5.6
32	gb\|CP000267.1\| Rhodoferax ferrireducens DSM 15236, complete genome	40	5.6
33	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
34	gb\|AC073599.16\|AC073599 Mus musculus 7 BAC RP23-8M3 (Roswell Par...	40	5.6
35	gb\|AC007971.3\| Homo sapiens BAC clone RP11-510C23 from 2, comple...	40	5.6
36	gb\|AC154656.2\| Mus musculus BAC clone RP24-268M5 from chromosome...	40	5.6
37	gb\|AC117406.2\| Homo sapiens X BAC CTD-2037D5 (CalTech Human BAC ...	40	5.6
38	dbj\|AP005691.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
39	dbj\|AP004120.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.6
40	gb\|AC147636.3\| Mus musculus BAC clone RP23-201C3 from 9, complet...	40	5.6
41	emb\|CT863711.2\| Medicago truncatula chromosome 5 clone mth2-152j...	40	5.6
42	gb\|AC133511.3\| Mus musculus BAC clone RP23-413E2 from 10, comple...	40	5.6

>ref|XM_478211.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2117

 Score =  553 bits (279), Expect = e-154
 Identities = 378/411 (91%)
 Strand = Plus / Plus

                                                                        
Query: 3    gcaggtgctggcagtgctgggattggtgttgtgaatgctgcaagcaggaccatggcaagg 62
            ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1158 gcaggggctggcagtgctgggattggtgttgtgaatgctgcaagccggactatggcaagg 1217

                                                                        
Query: 63   atgctgggaaacaacgaggttgcttttgagagtgctaggagtcaattctggatagtcgat 122
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1218 atgctgggaaacaatgaggttgcttttgagagtgccaggagtcaattctggatagtcgat 1277

                                                                        
Query: 123  gctcatggcttaataacagaggaacgtgtagaaatcgacccagatgcacttccctttgct 182
            || |||||  ||||||||||||| ||   | | || |||||||||||||  || ||||||
Sbjct: 1278 gcccatggtctaataacagaggagcgcacaaacattgacccagatgcacggccttttgct 1337

                                                                        
Query: 183  aggagaaagagtgagctaactcaccaaggcctaaatgagggcgcaagcttgattgaagtg 242
            |||||||||||||| |||  |||||||||||||| ||| || || |||||| ||||||||
Sbjct: 1338 aggagaaagagtgaactaggtcaccaaggcctaagtgaaggggcgagcttggttgaagtg 1397

                                                                        
Query: 243  gttaaaaaggtgaagcctgatgtcatacttggactatctgctgttggtggtttgttctca 302
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1398 gttaaaaaggtgaagcctgatgtcatacttggattatctgctgttggtggtttgttctca 1457

                                                                        
Query: 303  aaggaggttttggaagcactaaaagattcatcctcttccagaccagcaatttttgcgatg 362
            ||||||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1458 aaggaggttttagaagcattaaaagactcatcctcttcaagaccagcaattttcgcgatg 1517

                                                               
Query: 363  tcaaatccaactaagaatgctgaatgtacacctgaagaagccttctcaatt 413
            |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1518 tcaaatccaactaagaatgctgaatgtacacctgaagaagccttttcaatt 1568

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>ref|XM_506350.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1457_D07.117 mRNA
          Length = 3192

 Score =  553 bits (279), Expect = e-154
 Identities = 378/411 (91%)
 Strand = Plus / Plus

                                                                        
Query: 3    gcaggtgctggcagtgctgggattggtgttgtgaatgctgcaagcaggaccatggcaagg 62
            ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1254 gcaggggctggcagtgctgggattggtgttgtgaatgctgcaagccggactatggcaagg 1313

                                                                        
Query: 63   atgctgggaaacaacgaggttgcttttgagagtgctaggagtcaattctggatagtcgat 122
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1314 atgctgggaaacaatgaggttgcttttgagagtgccaggagtcaattctggatagtcgat 1373

                                                                        
Query: 123  gctcatggcttaataacagaggaacgtgtagaaatcgacccagatgcacttccctttgct 182
            || |||||  ||||||||||||| ||   | | || |||||||||||||  || ||||||
Sbjct: 1374 gcccatggtctaataacagaggagcgcacaaacattgacccagatgcacggccttttgct 1433

                                                                        
Query: 183  aggagaaagagtgagctaactcaccaaggcctaaatgagggcgcaagcttgattgaagtg 242
            |||||||||||||| |||  |||||||||||||| ||| || || |||||| ||||||||
Sbjct: 1434 aggagaaagagtgaactaggtcaccaaggcctaagtgaaggggcgagcttggttgaagtg 1493

                                                                        
Query: 243  gttaaaaaggtgaagcctgatgtcatacttggactatctgctgttggtggtttgttctca 302
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1494 gttaaaaaggtgaagcctgatgtcatacttggattatctgctgttggtggtttgttctca 1553

                                                                        
Query: 303  aaggaggttttggaagcactaaaagattcatcctcttccagaccagcaatttttgcgatg 362
            ||||||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1554 aaggaggttttagaagcattaaaagactcatcctcttcaagaccagcaattttcgcgatg 1613

                                                               
Query: 363  tcaaatccaactaagaatgctgaatgtacacctgaagaagccttctcaatt 413
            |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1614 tcaaatccaactaagaatgctgaatgtacacctgaagaagccttttcaatt 1664

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>dbj|AK065801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036E18, full
            insert sequence
          Length = 3192

 Score =  553 bits (279), Expect = e-154
 Identities = 378/411 (91%)
 Strand = Plus / Plus

                                                                        
Query: 3    gcaggtgctggcagtgctgggattggtgttgtgaatgctgcaagcaggaccatggcaagg 62
            ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1254 gcaggggctggcagtgctgggattggtgttgtgaatgctgcaagccggactatggcaagg 1313

                                                                        
Query: 63   atgctgggaaacaacgaggttgcttttgagagtgctaggagtcaattctggatagtcgat 122
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1314 atgctgggaaacaatgaggttgcttttgagagtgccaggagtcaattctggatagtcgat 1373

                                                                        
Query: 123  gctcatggcttaataacagaggaacgtgtagaaatcgacccagatgcacttccctttgct 182
            || |||||  ||||||||||||| ||   | | || |||||||||||||  || ||||||
Sbjct: 1374 gcccatggtctaataacagaggagcgcacaaacattgacccagatgcacggccttttgct 1433

                                                                        
Query: 183  aggagaaagagtgagctaactcaccaaggcctaaatgagggcgcaagcttgattgaagtg 242
            |||||||||||||| |||  |||||||||||||| ||| || || |||||| ||||||||
Sbjct: 1434 aggagaaagagtgaactaggtcaccaaggcctaagtgaaggggcgagcttggttgaagtg 1493

                                                                        
Query: 243  gttaaaaaggtgaagcctgatgtcatacttggactatctgctgttggtggtttgttctca 302
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1494 gttaaaaaggtgaagcctgatgtcatacttggattatctgctgttggtggtttgttctca 1553

                                                                        
Query: 303  aaggaggttttggaagcactaaaagattcatcctcttccagaccagcaatttttgcgatg 362
            ||||||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1554 aaggaggttttagaagcattaaaagactcatcctcttcaagaccagcaattttcgcgatg 1613

                                                               
Query: 363  tcaaatccaactaagaatgctgaatgtacacctgaagaagccttctcaatt 413
            |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1614 tcaaatccaactaagaatgctgaatgtacacctgaagaagccttttcaatt 1664

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>dbj|AK064866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I18, full
            insert sequence
          Length = 2117

 Score =  553 bits (279), Expect = e-154
 Identities = 378/411 (91%)
 Strand = Plus / Plus

                                                                        
Query: 3    gcaggtgctggcagtgctgggattggtgttgtgaatgctgcaagcaggaccatggcaagg 62
            ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 1158 gcaggggctggcagtgctgggattggtgttgtgaatgctgcaagccggactatggcaagg 1217

                                                                        
Query: 63   atgctgggaaacaacgaggttgcttttgagagtgctaggagtcaattctggatagtcgat 122
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1218 atgctgggaaacaatgaggttgcttttgagagtgccaggagtcaattctggatagtcgat 1277

                                                                        
Query: 123  gctcatggcttaataacagaggaacgtgtagaaatcgacccagatgcacttccctttgct 182
            || |||||  ||||||||||||| ||   | | || |||||||||||||  || ||||||
Sbjct: 1278 gcccatggtctaataacagaggagcgcacaaacattgacccagatgcacggccttttgct 1337

                                                                        
Query: 183  aggagaaagagtgagctaactcaccaaggcctaaatgagggcgcaagcttgattgaagtg 242
            |||||||||||||| |||  |||||||||||||| ||| || || |||||| ||||||||
Sbjct: 1338 aggagaaagagtgaactaggtcaccaaggcctaagtgaaggggcgagcttggttgaagtg 1397

                                                                        
Query: 243  gttaaaaaggtgaagcctgatgtcatacttggactatctgctgttggtggtttgttctca 302
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1398 gttaaaaaggtgaagcctgatgtcatacttggattatctgctgttggtggtttgttctca 1457

                                                                        
Query: 303  aaggaggttttggaagcactaaaagattcatcctcttccagaccagcaatttttgcgatg 362
            ||||||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1458 aaggaggttttagaagcattaaaagactcatcctcttcaagaccagcaattttcgcgatg 1517

                                                               
Query: 363  tcaaatccaactaagaatgctgaatgtacacctgaagaagccttctcaatt 413
            |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1518 tcaaatccaactaagaatgctgaatgtacacctgaagaagccttttcaatt 1568

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>dbj|AK061706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E11, full
           insert sequence
          Length = 1760

 Score =  553 bits (279), Expect = e-154
 Identities = 378/411 (91%)
 Strand = Plus / Plus

                                                                       
Query: 3   gcaggtgctggcagtgctgggattggtgttgtgaatgctgcaagcaggaccatggcaagg 62
           ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 555 gcaggggctggcagtgctgggattggtgttgtgaatgctgcaagccggactatggcaagg 614

                                                                       
Query: 63  atgctgggaaacaacgaggttgcttttgagagtgctaggagtcaattctggatagtcgat 122
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 615 atgctgggaaacaatgaggttgcttttgagagtgccaggagtcaattctggatagtcgat 674

                                                                       
Query: 123 gctcatggcttaataacagaggaacgtgtagaaatcgacccagatgcacttccctttgct 182
           || |||||  ||||||||||||| ||   | | || |||||||||||||  || ||||||
Sbjct: 675 gcccatggtctaataacagaggagcgcacaaacattgacccagatgcacggccttttgct 734

                                                                       
Query: 183 aggagaaagagtgagctaactcaccaaggcctaaatgagggcgcaagcttgattgaagtg 242
           |||||||||||||| |||  |||||||||||||| ||| || || |||||| ||||||||
Sbjct: 735 aggagaaagagtgaactaggtcaccaaggcctaagtgaaggggcgagcttggttgaagtg 794

                                                                       
Query: 243 gttaaaaaggtgaagcctgatgtcatacttggactatctgctgttggtggtttgttctca 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 795 gttaaaaaggtgaagcctgatgtcatacttggattatctgctgttggtggtttgttctca 854

                                                                       
Query: 303 aaggaggttttggaagcactaaaagattcatcctcttccagaccagcaatttttgcgatg 362
           ||||||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 855 aaggaggttttagaagcattaaaagactcatcctcttcaagaccagcaattttcgcgatg 914

                                                              
Query: 363 tcaaatccaactaagaatgctgaatgtacacctgaagaagccttctcaatt 413
           |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 915 tcaaatccaactaagaatgctgaatgtacacctgaagaagccttttcaatt 965

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>gb|AY107471.1| Zea mays PCO115183 mRNA sequence
          Length = 1366

 Score =  438 bits (221), Expect = e-120
 Identities = 359/405 (88%)
 Strand = Plus / Plus

                                                                       
Query: 9   gctggcagtgctgggattggtgttgtgaatgctgcaagcaggaccatggcaaggatgctg 68
           |||||||||||||| ||||| || ||||||||||||||||| ||||||||||| ||| ||
Sbjct: 169 gctggcagtgctggtattggagtggtgaatgctgcaagcagaaccatggcaagaatgttg 228

                                                                       
Query: 69  ggaaacaacgaggttgcttttgagagtgctaggagtcaattctggatagtcgatgctcat 128
           |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct: 229 ggaaacaatgacgttgcttttgagagtgcgaggagtcaattctggatagtggatgcccat 288

                                                                       
Query: 129 ggcttaataacagaggaacgtgtagaaatcgacccagatgcacttccctttgctaggaga 188
           ||| |||||||||| || || | ||| ||||| ||||||||||  || |||||||| |||
Sbjct: 289 ggcctaataacagaagaccgagaagatatcgatccagatgcacggccttttgctagaaga 348

                                                                       
Query: 189 aagagtgagctaactcaccaaggcctaaatgagggcgcaagcttgattgaagtggttaaa 248
           |||||||||||   |||||| ||||||| |||||| ||||||||  ||||||||||||||
Sbjct: 349 aagagtgagcttggtcaccagggcctaagtgagggggcaagcttagttgaagtggttaaa 408

                                                                       
Query: 249 aaggtgaagcctgatgtcatacttggactatctgctgttggtggtttgttctcaaaggag 308
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 409 aaggtgaagcctgatgtcatacttggattatctgctgttggtggtttgttctcgaaggag 468

                                                                       
Query: 309 gttttggaagcactaaaagattcatcctcttccagaccagcaatttttgcgatgtcaaat 368
           ||| | || |||||||||||||| ||||| || || |||||||||||||| ||||| |||
Sbjct: 469 gttctagaggcactaaaagattcgtcctcgtcaaggccagcaatttttgcaatgtccaat 528

                                                        
Query: 369 ccaactaagaatgctgaatgtacacctgaagaagccttctcaatt 413
           ||||||||||||||||| ||||||||||  ||||| || ||||||
Sbjct: 529 ccaactaagaatgctgagtgtacacctggggaagcattttcaatt 573

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  188 bits (95), Expect = 1e-44
 Identities = 110/115 (95%)
 Strand = Plus / Plus

                                                                            
Query: 15       agtgctgggattggtgttgtgaatgctgcaagcaggaccatggcaaggatgctgggaaac 74
                ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 18538504 agtgctgggattggtgttgtgaatgctgcaagccggactatggcaaggatgctgggaaac 18538563

                                                                       
Query: 75       aacgaggttgcttttgagagtgctaggagtcaattctggatagtcgatgctcatg 129
                || |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 18538564 aatgaggttgcttttgagagtgccaggagtcaattctggatagtcgatgcccatg 18538618



 Score =  129 bits (65), Expect = 8e-27
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                            
Query: 242      ggttaaaaaggtgaagcctgatgtcatacttggactatctgctgttggtggtttgttctc 301
                |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 18539766 ggttaaaaaggtgaagcctgatgtcatacttggattatctgctgttggtggtttgttctc 18539825

                         
Query: 302      aaaggaggt 310
                |||||||||
Sbjct: 18539826 aaaggaggt 18539834



 Score =  109 bits (55), Expect = 7e-21
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                            
Query: 307      aggttttggaagcactaaaagattcatcctcttccagaccagcaatttttgcgatgtcaa 366
                ||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct: 18540235 aggttttagaagcattaaaagactcatcctcttcaagaccagcaattttcgcgatgtcaa 18540294

                               
Query: 367      atccaactaagaatg 381
                |||||||||||||||
Sbjct: 18540295 atccaactaagaatg 18540309



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                            
Query: 159      gacccagatgcacttccctttgctaggagaaagagtgagctaactcaccaaggcctaaat 218
                |||||||||||||  || |||||||||||||||||||| |||  |||||||||||||| |
Sbjct: 18539230 gacccagatgcacggccttttgctaggagaaagagtgaactaggtcaccaaggcctaagt 18539289

                                          
Query: 219      gagggcgcaagcttgattgaagtggt 244
                || || || |||||| ||||||||||
Sbjct: 18539290 gaaggggcgagcttggttgaagtggt 18539315



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 381      gctgaatgtacacctgaagaagccttctcaatt 413
                |||||||||||||||||||||||||| ||||||
Sbjct: 18540395 gctgaatgtacacctgaagaagccttttcaatt 18540427

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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score =  188 bits (95), Expect = 1e-44
 Identities = 110/115 (95%)
 Strand = Plus / Plus

                                                                         
Query: 15    agtgctgggattggtgttgtgaatgctgcaagcaggaccatggcaaggatgctgggaaac 74
             ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 67260 agtgctgggattggtgttgtgaatgctgcaagccggactatggcaaggatgctgggaaac 67319

                                                                    
Query: 75    aacgaggttgcttttgagagtgctaggagtcaattctggatagtcgatgctcatg 129
             || |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 67320 aatgaggttgcttttgagagtgccaggagtcaattctggatagtcgatgcccatg 67374



 Score =  129 bits (65), Expect = 8e-27
 Identities = 68/69 (98%)
 Strand = Plus / Plus

                                                                         
Query: 242   ggttaaaaaggtgaagcctgatgtcatacttggactatctgctgttggtggtttgttctc 301
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 68522 ggttaaaaaggtgaagcctgatgtcatacttggattatctgctgttggtggtttgttctc 68581

                      
Query: 302   aaaggaggt 310
             |||||||||
Sbjct: 68582 aaaggaggt 68590



 Score =  109 bits (55), Expect = 7e-21
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                         
Query: 307   aggttttggaagcactaaaagattcatcctcttccagaccagcaatttttgcgatgtcaa 366
             ||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct: 68991 aggttttagaagcattaaaagactcatcctcttcaagaccagcaattttcgcgatgtcaa 69050

                            
Query: 367   atccaactaagaatg 381
             |||||||||||||||
Sbjct: 69051 atccaactaagaatg 69065



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                         
Query: 159   gacccagatgcacttccctttgctaggagaaagagtgagctaactcaccaaggcctaaat 218
             |||||||||||||  || |||||||||||||||||||| |||  |||||||||||||| |
Sbjct: 67986 gacccagatgcacggccttttgctaggagaaagagtgaactaggtcaccaaggcctaagt 68045

                                       
Query: 219   gagggcgcaagcttgattgaagtggt 244
             || || || |||||| ||||||||||
Sbjct: 68046 gaaggggcgagcttggttgaagtggt 68071



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 381   gctgaatgtacacctgaagaagccttctcaatt 413
             |||||||||||||||||||||||||| ||||||
Sbjct: 69151 gctgaatgtacacctgaagaagccttttcaatt 69183

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>gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic NAD-dependent malic
            enzyme subunit alpha precursor mRNA, complete cds
          Length = 2283

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 103/122 (84%)
 Strand = Plus / Plus

                                                                        
Query: 291  ggtttgttctcaaaggaggttttggaagcactaaaagattcatcctcttccagaccagca 350
            ||||||||||||||||||||||||||||| || ||||||||| | ||  |||| || |||
Sbjct: 1369 ggtttgttctcaaaggaggttttggaagctcttaaagattcaacatcaaccaggcctgca 1428

                                                                        
Query: 351  atttttgcgatgtcaaatccaactaagaatgctgaatgtacacctgaagaagccttctca 410
            || ||||||||||| ||||| || || |||||||| || || || || ||||| ||||||
Sbjct: 1429 atctttgcgatgtctaatcctacaaaaaatgctgagtgcacccccgaggaagcattctca 1488

              
Query: 411  at 412
            ||
Sbjct: 1489 at 1490

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>emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mitochondrial NAD+-dependent
            malic enzyme (malate dehydrogenase)
          Length = 2251

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 348  gcaatttttgcgatgtcaaatccaactaagaatgctgaatgtacacctgaagaagc 403
            ||||||||| | |||||||| ||||| |  ||||||||||| |||||||| |||||
Sbjct: 1409 gcaatttttccaatgtcaaacccaacgagaaatgctgaatgcacacctgaggaagc 1464

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>emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59kDa subunit of the
            NAD+-dependent malic enzyme
          Length = 2188

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 342  agaccagcaatttttgcgatgtcaaatccaactaagaatgctgaatg 388
            ||||| |||||||| || ||||||||||| || || |||||||||||
Sbjct: 1370 agacctgcaattttcgccatgtcaaatcctacaaacaatgctgaatg 1416



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 236  tgaagtggttaaaaaggtgaagcctgatgt 265
            ||||||||| ||||||||||||||| ||||
Sbjct: 1264 tgaagtggtcaaaaaggtgaagcctcatgt 1293

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>emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chromosome 11 Contains the
             3' end of the Slit3 gene for slit homolog 3 (Drosophila),
             complete sequence
          Length = 113164

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 177   tttgctaggagaaagagtgagc 198
             ||||||||||||||||||||||
Sbjct: 21165 tttgctaggagaaagagtgagc 21144

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>ref|NM_197228.1| Oryza sativa (japonica cultivar-group) putative mitochondrial
            NAD+-dependent malic enzyme protein (OSJNBb0073N24.24),
            mRNA
          Length = 1766

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 348  gcaatttttgcgatgtcaaatccaactaagaatgctgaatgtacacctgaaga 400
            ||||||||||| ||||| || |||||||  || || |||||||| ||||||||
Sbjct: 1312 gcaatttttgcaatgtccaacccaactactaaagccgaatgtactcctgaaga 1364

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>gb|AC153579.10| Mus musculus 6 BAC RP23-21F2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228481

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    ctaggagaaagagtgagctaa 201
              |||||||||||||||||||||
Sbjct: 163494 ctaggagaaagagtgagctaa 163474

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>dbj|AK101024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D19, full
            insert sequence
          Length = 2454

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 348  gcaatttttgcgatgtcaaatccaactaagaatgctgaatgtacacctgaaga 400
            ||||||||||| ||||| || |||||||  || || |||||||| ||||||||
Sbjct: 1633 gcaatttttgcaatgtccaacccaactactaaagccgaatgtactcctgaaga 1685

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>dbj|AK070828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M02, full
            insert sequence
          Length = 2357

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 348  gcaatttttgcgatgtcaaatccaactaagaatgctgaatgtacacctgaaga 400
            ||||||||||| ||||| || |||||||  || || |||||||| ||||||||
Sbjct: 1552 gcaatttttgcaatgtccaacccaactactaaagccgaatgtactcctgaaga 1604

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>emb|AL929142.6| Mouse DNA sequence from clone RP23-340A13 on chromosome 2, complete
             sequence
          Length = 207823

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 295   tgttctcaaaggaggttttgg 315
             |||||||||||||||||||||
Sbjct: 70854 tgttctcaaaggaggttttgg 70874

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>ref|NM_126936.2| Arabidopsis thaliana malic enzyme/ oxidoreductase, acting on NADH or
            NADPH, NAD or NADP as acceptor AT2G13560 mRNA, complete
            cds
          Length = 2113

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 74/92 (80%)
 Strand = Plus / Plus

                                                                        
Query: 297  ttctcaaaggaggttttggaagcactaaaagattcatcctcttccagaccagcaattttt 356
            |||||||| |||||||| |||||| | |||| |||| ||||  | || || || || |||
Sbjct: 1446 ttctcaaaagaggttttagaagcaatgaaaggttcaacctcgacaaggcctgctatattt 1505

                                            
Query: 357  gcgatgtcaaatccaactaagaatgctgaatg 388
            || |||||||| || || || |||||||||||
Sbjct: 1506 gcaatgtcaaaccccacaaaaaatgctgaatg 1537

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      tggtgttgtgaatgctgcaa 45
               ||||||||||||||||||||
Sbjct: 4094043 tggtgttgtgaatgctgcaa 4094024

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>ref|XM_460336.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E25256g)
            partial mRNA
          Length = 2424

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  caaatccaactaagaatgct 383
            ||||||||||||||||||||
Sbjct: 1943 caaatccaactaagaatgct 1962

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>emb|CT005236.2| Pan troglodytes chromosome X clone RP43-010E09 map Xq28, complete
             sequence
          Length = 160755

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gaccatggcaaggatgctgg 69
             ||||||||||||||||||||
Sbjct: 74440 gaccatggcaaggatgctgg 74459

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>gb|BT000996.1| Arabidopsis thaliana clone U19925 putative malate oxidoreductase
            (malic enzyme) (At2g13560) mRNA, complete cds
          Length = 1902

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 74/92 (80%)
 Strand = Plus / Plus

                                                                        
Query: 297  ttctcaaaggaggttttggaagcactaaaagattcatcctcttccagaccagcaattttt 356
            |||||||| |||||||| |||||| | |||| |||| ||||  | || || || || |||
Sbjct: 1321 ttctcaaaagaggttttagaagcaatgaaaggttcaacctcgacaaggcctgctatattt 1380

                                            
Query: 357  gcgatgtcaaatccaactaagaatgctgaatg 388
            || |||||||| || || || |||||||||||
Sbjct: 1381 gcaatgtcaaaccccacaaaaaatgctgaatg 1412

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>gb|AC123065.3| Mus musculus BAC clone RP23-239F13 from 9, complete sequence
          Length = 158137

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    ctttgctaggagaaagagtg 195
              ||||||||||||||||||||
Sbjct: 140327 ctttgctaggagaaagagtg 140308

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>gb|AC134049.24| Medicago truncatula clone mth2-21j3, complete sequence
          Length = 124857

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   cctaaatgagggcgcaagcttgat 235
             |||||||||||| |||||||||||
Sbjct: 19865 cctaaatgagggggcaagcttgat 19888

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>gb|AC162370.4| Mus musculus chromosome 7, clone RP23-32F4, complete sequence
          Length = 225308

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    tgaagcctgatgtcatactt 272
              ||||||||||||||||||||
Sbjct: 175058 tgaagcctgatgtcatactt 175077

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>emb|AL160032.14| Human DNA sequence from clone RP11-474L7 on chromosome 13 Contains the
             3' end of the KLF12 gene for Kruppel-like factor 12, a
             novel gene and the 5' end of a novel gene and a CpG
             island, complete sequence
          Length = 181324

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     gtgctggcagtgctgggatt 26
             ||||||||||||||||||||
Sbjct: 23147 gtgctggcagtgctgggatt 23166

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>emb|AL138717.6| Human DNA sequence from clone RP11-11D8 on chromosome 6 Contains the 5'
             end of the NCUBE1 gene for non-canonical ubiquitin
             conjugating enzyme 1, the gene for a novel protein similar
             to rag C protein (GTR2), an NACA
             (nascent-polypeptide-associated complex alpha polypeptide)
             pseudogene, the 5' end of the ANKRD6 gene for ankyrin
             repeat domain 6 (KIAA0957) and three CpG islands, complete
             sequence
          Length = 104309

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   gaatgtacacctgaagaagc 403
             ||||||||||||||||||||
Sbjct: 62361 gaatgtacacctgaagaagc 62380

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>gb|AY091108.1| Arabidopsis thaliana putative malate oxidoreductase (malic enzyme)
            (At2g13560) mRNA, complete cds
          Length = 2181

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 74/92 (80%)
 Strand = Plus / Plus

                                                                        
Query: 297  ttctcaaaggaggttttggaagcactaaaagattcatcctcttccagaccagcaattttt 356
            |||||||| |||||||| |||||| | |||| |||| ||||  | || || || || |||
Sbjct: 1447 ttctcaaaagaggttttagaagcaatgaaaggttcaacctcgacaaggcctgctatattt 1506

                                            
Query: 357  gcgatgtcaaatccaactaagaatgctgaatg 388
            || |||||||| || || || |||||||||||
Sbjct: 1507 gcaatgtcaaaccccacaaaaaatgctgaatg 1538

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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
               hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 364     caaatccaactaagaatgct 383
               ||||||||||||||||||||
Sbjct: 1965541 caaatccaactaagaatgct 1965522

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>gb|AC153967.5| Mus musculus 10 BAC RP24-372A5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 205657

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    caaaggaggttttggaagca 320
              ||||||||||||||||||||
Sbjct: 176052 caaaggaggttttggaagca 176071

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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     tggactatctgctgttggtg 291
               ||||||||||||||||||||
Sbjct: 1016490 tggactatctgctgttggtg 1016509

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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 3       gcaggtgctggcagtgctgg 22
               ||||||||||||||||||||
Sbjct: 1077831 gcaggtgctggcagtgctgg 1077812

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 349      caatttttgcgatgtcaaat 368
                ||||||||||||||||||||
Sbjct: 34898030 caatttttgcgatgtcaaat 34898011

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>gb|AC073599.16|AC073599 Mus musculus 7 BAC RP23-8M3 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 226256

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   tgaagcctgatgtcatactt 272
             ||||||||||||||||||||
Sbjct: 59227 tgaagcctgatgtcatactt 59246

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>gb|AC007971.3| Homo sapiens BAC clone RP11-510C23 from 2, complete sequence
          Length = 146705

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   taagaatgctgaatgtacac 393
             ||||||||||||||||||||
Sbjct: 47748 taagaatgctgaatgtacac 47767

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>gb|AC154656.2| Mus musculus BAC clone RP24-268M5 from chromosome 16, complete sequence
          Length = 166376

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 182    taggagaaagagtgagctaactca 205
              |||||||||||| |||||||||||
Sbjct: 101263 taggagaaagagagagctaactca 101240

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>gb|AC117406.2| Homo sapiens X BAC CTD-2037D5 (CalTech Human BAC Library D) complete
             sequence
          Length = 125360

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    gaccatggcaaggatgctgg 69
             ||||||||||||||||||||
Sbjct: 41475 gaccatggcaaggatgctgg 41456

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>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0053L11
          Length = 147123

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    caatttttgcgatgtcaaat 368
              ||||||||||||||||||||
Sbjct: 119625 caatttttgcgatgtcaaat 119606

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>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   caatttttgcgatgtcaaat 368
             ||||||||||||||||||||
Sbjct: 57527 caatttttgcgatgtcaaat 57508

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>gb|AC147636.3| Mus musculus BAC clone RP23-201C3 from 9, complete sequence
          Length = 202197

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    ctttgctaggagaaagagtg 195
              ||||||||||||||||||||
Sbjct: 120002 ctttgctaggagaaagagtg 119983

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>emb|CT863711.2| Medicago truncatula chromosome 5 clone mth2-152j13, COMPLETE
           SEQUENCE
          Length = 108806

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 212 cctaaatgagggcgcaagcttgat 235
           |||||||||||| |||||||||||
Sbjct: 143 cctaaatgagggggcaagcttgat 120

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>gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, complete sequence
          Length = 214377

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    caaaggaggttttggaagca 320
              ||||||||||||||||||||
Sbjct: 131012 caaaggaggttttggaagca 131031


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,818,661
Number of Sequences: 3902068
Number of extensions: 4818661
Number of successful extensions: 69650
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69483
Number of HSP's gapped (non-prelim): 165
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result