ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags34n08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
4gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
5dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
6gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds 50 0.008
7gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds 44 0.47
8dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
9gb|AY364319.1| Felis catus chromosome A2 endogenous virus endoge... 40 7.3
10gb|AY364318.1| Felis catus chromosome A1 endogenous virus endoge... 40 7.3
11ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protei... 40 7.3
12gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 7.3
13gb|AC151314.2| Xenopus tropicalis clone ISB-195A7, complete sequ... 40 7.3
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
15gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, r... 40 7.3
16gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14... 40 7.3
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
18emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057... 40 7.3
19gb|AC130712.4| Mus musculus BAC clone RP23-125B4 from 1, complet... 40 7.3
20gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence 40 7.3
21gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia vir... 40 7.3 
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 452    aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 504
              ||||| ||||||||||||||| | ||| ||||||| |||||||| ||||||||
Sbjct: 167411 aacccgatgcacctccatggctatgacgtgttcgtgctcgcgcaagggctcgg 167463



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 405    cggtggagatcgtgttccagagc 427
              |||||||||||||||||||||||
Sbjct: 167364 cggtggagatcgtgttccagagc 167386
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 452     aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 504
               ||||| ||||||||||||||| | ||| ||||||| |||||||| ||||||||
Sbjct: 8850816 aacccgatgcacctccatggctatgacgtgttcgtgctcgcgcaagggctcgg 8850764



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 452      aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggct 501
                ||||||||||||||||||||| | ||| | ||| |||| |||||||||||
Sbjct: 24578346 aaccccatgcacctccatggctatgacgtcttcctccttgcgcaggggct 24578395



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 405     cggtggagatcgtgttccagagc 427
               |||||||||||||||||||||||
Sbjct: 8850863 cggtggagatcgtgttccagagc 8850841



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 452      aaccccatgcacctccatggc 472
                |||||||||||||||||||||
Sbjct: 24569654 aaccccatgcacctccatggc 24569674
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 452     aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 504
               ||||| ||||||||||||||| | ||| ||||||| |||||||| ||||||||
Sbjct: 8922479 aacccgatgcacctccatggctatgacgtgttcgtgctcgcgcaagggctcgg 8922427



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 452      aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggct 501
                ||||||||||||||||||||| | ||| | ||| |||| |||||||||||
Sbjct: 24890016 aaccccatgcacctccatggctatgacgtcttcctccttgcgcaggggct 24890065



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 405     cggtggagatcgtgttccagagc 427
               |||||||||||||||||||||||
Sbjct: 8922526 cggtggagatcgtgttccagagc 8922504



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 452      aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 504
                ||||||||||||||||||||| | ||  | ||| |||| || |||||||||||
Sbjct: 24881324 aaccccatgcacctccatggctatgatgtcttcctccttgcacaggggctcgg 24881376
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>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0041L19, complete sequence
          Length = 155086

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 452   aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggct 501
             ||||||||||||||||||||| | ||| | ||| |||| |||||||||||
Sbjct: 55248 aaccccatgcacctccatggctatgacgtcttcctccttgcgcaggggct 55297



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 452   aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggctcgg 504
             ||||||||||||||||||||| | ||  | ||| |||| || |||||||||||
Sbjct: 46556 aaccccatgcacctccatggctatgatgtcttcctccttgcacaggggctcgg 46608
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>dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full
            insert sequence
          Length = 2095

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 452  aaccccatgcacctccatggccaggacatgttcgtcctcgcgcaggggct 501
            ||||||||||||||||||||| | ||| | ||| |||| |||||||||||
Sbjct: 1503 aaccccatgcacctccatggctatgacgtcttcctccttgcgcaggggct 1552
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>gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds
          Length = 2056

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 458  atgcacctccatggccaggacatgttcgtcctcgcgcaggg 498
            ||||||||||||||||| ||| | ||||||||||| |||||
Sbjct: 1443 atgcacctccatggccacgacttcttcgtcctcgcccaggg 1483
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>gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds
          Length = 2156

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 404  acggtggagatcgtgttccagagcccggtg 433
            ||||||||||||||| |||||| |||||||
Sbjct: 1381 acggtggagatcgtgctccagaacccggtg 1410
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>dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118K21, full
            insert sequence
          Length = 2065

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 452  aaccccatgcacctccatggc 472
            |||||||||||||||||||||
Sbjct: 1529 aaccccatgcacctccatggc 1549
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>gb|AY364319.1| Felis catus chromosome A2 endogenous virus endogenous feline leukemia
            virus enFeLV-GGAG, complete sequence
          Length = 9867

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 449  gctaaccccatgcacctccatggc 472
            |||||||||||||| |||||||||
Sbjct: 7931 gctaaccccatgcatctccatggc 7954
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>gb|AY364318.1| Felis catus chromosome A1 endogenous virus endogenous feline leukemia
            virus enFeLV-AGTT, complete sequence
          Length = 9895

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 449  gctaaccccatgcacctccatggc 472
            |||||||||||||| |||||||||
Sbjct: 7944 gctaaccccatgcatctccatggc 7967
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>ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protein LOC611444
           (LOC611444), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 487 cctcgcgcaggggctcgggc 506
           ||||||||||||||||||||
Sbjct: 386 cctcgcgcaggggctcgggc 405
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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   tgcgcccggtgccggccaacgtcc 134
             ||||||||||||| ||||||||||
Sbjct: 84746 tgcgcccggtgcccgccaacgtcc 84769
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>gb|AC151314.2| Xenopus tropicalis clone ISB-195A7, complete sequence
          Length = 108847

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   tttgggacccatgattaata 224
             ||||||||||||||||||||
Sbjct: 98197 tttgggacccatgattaata 98178
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 387      ggctgcggtacaatgccacggtgg 410
                ||||| ||||||||||||||||||
Sbjct: 16376890 ggctgtggtacaatgccacggtgg 16376913
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>gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, region 84D-84E, BAC clone
             BACR11D12, complete sequence
          Length = 189596

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   taacatgagcagcattagca 299
             ||||||||||||||||||||
Sbjct: 63289 taacatgagcagcattagca 63308
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>gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14 of 118 of the complete
              sequence
          Length = 267607

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    taacatgagcagcattagca 299
              ||||||||||||||||||||
Sbjct: 139828 taacatgagcagcattagca 139847
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 387      ggctgcggtacaatgccacggtgg 410
                ||||| ||||||||||||||||||
Sbjct: 16330123 ggctgtggtacaatgccacggtgg 16330146
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>emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057_E03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127989

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 387   ggctgcggtacaatgccacggtgg 410
             ||||| ||||||||||||||||||
Sbjct: 75501 ggctgtggtacaatgccacggtgg 75478
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>gb|AC130712.4| Mus musculus BAC clone RP23-125B4 from 1, complete sequence
          Length = 186518

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 171    tctgtccacatggcgaatcatcct 194
              ||||||||||||| ||||||||||
Sbjct: 110719 tctgtccacatggtgaatcatcct 110696
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>gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 449  gctaaccccatgcacctccatggc 472
            |||||||||||||| |||||||||
Sbjct: 1258 gctaaccccatgcatctccatggc 1281
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>gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia virus envelope protein gene,
            complete cds
          Length = 2615

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 449  gctaaccccatgcacctccatggc 472
            |||||||||||||| |||||||||
Sbjct: 1318 gctaaccccatgcatctccatggc 1341


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,205,403
Number of Sequences: 3902068
Number of extensions: 3205403
Number of successful extensions: 51310
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51172
Number of HSP's gapped (non-prelim): 136
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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