ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags34n02 |
|---|---|
| Clone Library Name | barley_pub |
>DIM_ARATH (Q39085) Cell elongation protein DIMINUTO (Cell elongation protein| Dwarf1) Length = 561 Score = 350 bits (897), Expect = 2e-96 Identities = 155/175 (88%), Positives = 166/175 (94%) Frame = +2 Query: 41 DGDPAKVPDFVEGMVYNATEGVMMTGVYASKEEAKKKGNKINSVGWWFKPWFYQHAQTAL 220 DGD +K+PDFVEGMVYN TEGVMM G YASKEEAKKKGNKIN+VGWWFKPWFYQHAQTAL Sbjct: 262 DGDKSKIPDFVEGMVYNPTEGVMMVGTYASKEEAKKKGNKINNVGWWFKPWFYQHAQTAL 321 Query: 221 KKGEFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFWFRFLFGWLMPPKVSLLKATQGDA 400 KKG+FVEYIPTREYYHRHTRCLYWEGKLILPFGDQFWFR+L GWLMPPKVSLLKATQG+A Sbjct: 322 KKGQFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFWFRYLLGWLMPPKVSLLKATQGEA 381 Query: 401 IRNYYHDNHVIQDMLVPLYKVGDALEFVHQEMEVYPLWLCPHRLFKLPVKTMIYP 565 IRNYYHD HVIQDMLVPLYKVGDALE+VH+EMEVYP+WLCPH+LFK P+K IYP Sbjct: 382 IRNYYHDMHVIQDMLVPLYKVGDALEWVHREMEVYPIWLCPHKLFKQPIKGQIYP 436
>DIM_PEA (P93472) Cell elongation protein diminuto| Length = 567 Score = 323 bits (827), Expect(2) = 8e-88 Identities = 148/178 (83%), Positives = 161/178 (90%), Gaps = 3/178 (1%) Frame = +2 Query: 41 DGDP---AKVPDFVEGMVYNATEGVMMTGVYASKEEAKKKGNKINSVGWWFKPWFYQHAQ 211 DGD KVPDFVE M+Y+ T V MTG YASKEEAKKKGNKIN+VGWW+K WFYQHA+ Sbjct: 261 DGDQDNDEKVPDFVETMIYSPTRAVCMTGRYASKEEAKKKGNKINNVGWWYKTWFYQHAE 320 Query: 212 TALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFWFRFLFGWLMPPKVSLLKATQ 391 TALKKG FVEYIPTREYYHRHTRCLYWEGKLILPFGDQF FRFLFGWLMPPKVSLLKATQ Sbjct: 321 TALKKGLFVEYIPTREYYHRHTRCLYWEGKLILPFGDQFSFRFLFGWLMPPKVSLLKATQ 380 Query: 392 GDAIRNYYHDNHVIQDMLVPLYKVGDALEFVHQEMEVYPLWLCPHRLFKLPVKTMIYP 565 G+AIRNYYH+ HVIQDMLVPLYKVGDALE+ +EME+YP+WLCPH+LFKLP+KTMIYP Sbjct: 381 GEAIRNYYHEMHVIQDMLVPLYKVGDALEWSDREMEIYPIWLCPHKLFKLPIKTMIYP 438 Score = 20.8 bits (42), Expect(2) = 8e-88 Identities = 7/12 (58%), Positives = 11/12 (91%) Frame = +1 Query: 1 ELAQAYADAVAP 36 ++AQAY+D+ AP Sbjct: 248 DIAQAYSDSFAP 259
>DHC24_HUMAN (Q15392) 24-dehydrocholesterol reductase precursor (EC 1.3.1.-)| (3-beta-hydroxysterol delta-24-reductase) (Seladin-1) (Diminuto/dwarf1 homolog) Length = 516 Score = 172 bits (436), Expect = 6e-43 Identities = 79/160 (49%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Frame = +2 Query: 68 FVEGMVYNATEGVMMTGVYASKEEAKKKGNKINSVGWWFKPWFYQHAQTALKKG-EFVEY 244 FVEG++Y+ E V+MTGV + E +K+NS+G ++KPWF++H + LK E +EY Sbjct: 266 FVEGLLYSLDEAVIMTGVMTDEAEP----SKLNSIGNYYKPWFFKHVENYLKTNREGLEY 321 Query: 245 IPTREYYHRHTRCLYWEGKLILPFGDQFWFRFLFGWLMPPKVSLLKATQGDAIRNYYHDN 424 IP R YYHRHTR ++WE + I+PFG+ FR+LFGW++PPK+SLLK TQG+ +R Y + Sbjct: 322 IPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQH 381 Query: 425 HVIQDMLVPLYKVGDALEFVHQEMEVYPLWLCPHRLFKLP 544 HV+QDMLVP+ + AL ++ VYP+WLCP L P Sbjct: 382 HVVQDMLVPMKCLQQALHTFQNDIHVYPIWLCPFILPSQP 421
>DHC24_MACFA (Q60HC5) 24-dehydrocholesterol reductase precursor (EC 1.3.1.-)| (3-beta-hydroxysterol delta-24-reductase) Length = 516 Score = 172 bits (435), Expect = 8e-43 Identities = 79/160 (49%), Positives = 111/160 (69%), Gaps = 1/160 (0%) Frame = +2 Query: 68 FVEGMVYNATEGVMMTGVYASKEEAKKKGNKINSVGWWFKPWFYQHAQTALKKG-EFVEY 244 FVEG++Y+ E V+MTGV + E +K+NS+G ++KPWF++H + LK E +EY Sbjct: 266 FVEGLLYSLDEAVIMTGVMTDEVEP----SKLNSIGNYYKPWFFKHVENYLKTNREGLEY 321 Query: 245 IPTREYYHRHTRCLYWEGKLILPFGDQFWFRFLFGWLMPPKVSLLKATQGDAIRNYYHDN 424 IP R YYHRHTR ++WE + I+PFG+ FR+LFGW++PPK+SLLK TQG+ +R Y + Sbjct: 322 IPLRHYYHRHTRSIFWELQDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQH 381 Query: 425 HVIQDMLVPLYKVGDALEFVHQEMEVYPLWLCPHRLFKLP 544 HV+QDMLVP+ + AL ++ VYP+WLCP L P Sbjct: 382 HVVQDMLVPMKCLQQALHTFQNDIHVYPIWLCPFILPSQP 421
>DIML_CAEEL (O17397) Diminuto-like protein| Length = 525 Score = 162 bits (411), Expect = 5e-40 Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Frame = +2 Query: 65 DFVEGMVYNATEGVMMTGVYASKEEAKKKGNKINSVGWWFKPWFYQHAQTAL-KKGEFVE 241 DFVE +++N +G +M G ++ + + +N +G W+K WFY H + + KK E +E Sbjct: 272 DFVEALMFNKEKGCIMLGEFSDGPDTHDE--VVNPIGRWYKKWFYTHVEDLINKKHESIE 329 Query: 242 YIPTREYYHRHTRCLYWEGKLILPFGDQFWFRFLFGWLMPPKVSLLKATQGDAIRNYYHD 421 YIP R+YYHRH++ ++WE + I+PFG+ FR+L W+ PPK++ LKAT + +R Y Sbjct: 330 YIPLRDYYHRHSKSIFWELRDIVPFGNNVLFRYLMAWMCPPKIAFLKATTPNVLRKLYDR 389 Query: 422 NHVIQDMLVPLYKVGDALEFVHQEMEVYPLWLCPHRLFKLP 544 +HV+QDMLVPL K+ + ++ H+E+E+YP+WLCP L P Sbjct: 390 SHVLQDMLVPLDKLEECIDLFHKEVEIYPMWLCPFYLKSQP 430
>CU093_HUMAN (P59091) Protein C21orf93| Length = 139 Score = 33.9 bits (76), Expect = 0.33 Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Frame = +1 Query: 199 PARADGAEEGRV-----CGVHPYEGVLPQAHPVPVLGGEAHPALRRPVLVQVPLWLADAP 363 PA A G RV C HP++G P P+P G E LR + P D Sbjct: 26 PAAAGGGVGPRVMLSSLCREHPWQGRCP---PIPAHGKEVRQ-LRHLHRTRPPDTHQDMA 81 Query: 364 QGVPAQGHPGRRHQELLP*QPCHPGHAGAPVQ 459 +G PG H LP +P H H PVQ Sbjct: 82 RG------PGLPHTHGLPARPSHVRHQTEPVQ 107
>HPSE_MOUSE (Q6YGZ1) Heparanase precursor (EC 3.2.-.-) (Endo-glucoronidase)| [Contains: Heparanase 8 kDa subunit; Heparanase 50 kDa subunit] Length = 535 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +2 Query: 326 FWFRFLFGWLMPPKVSL--LKATQGDAIRNYYHDNHVIQDMLVPLYKVGDALEFVHQEME 499 +W LF L+ P+V L +K +R Y H +V P Y+ GD +V Sbjct: 396 YWLSLLFKKLVGPRVLLSRVKGPDRSKLRVYLHCTNVYH----PRYQEGDLTLYVLNLHN 451 Query: 500 VYPLWLCPHRLFKLPVKTMI 559 V P LF+ PV T + Sbjct: 452 VTKYLKVPPPLFRKPVDTYL 471
>PRLR_RABIT (P14787) Prolactin receptor precursor (PRL-R)| Length = 616 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Frame = -2 Query: 351 QPKRNLNQNWSPK-----GRMSFPSQYRHRVCLW*YSLVGMYSTNSPFFSAVCAC 202 +PK N+ W P+ G+M + S + W G ++TNSP+ + C Sbjct: 385 KPKANVTHTWDPQTISLVGKMPYLSVNGSKSSTWPLLQPGQHNTNSPYHNIADMC 439
>Y997_HAEIN (P44090) Hypothetical protein HI0997| Length = 229 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Frame = +2 Query: 113 TGVYASKEEAKKKGNKINSVGWWFKPWFYQHAQTALKKGEFVEYIPTR---EYYHRHTRC 283 +G K+ A K G ++ +V W K W TAL+ GE I YY + Sbjct: 51 SGTNTMKQYADKLGIRLENVDWLSKTW---QISTALEYGESRYKIRKHLDGNYYFVSSTL 107 Query: 284 LYWEGKLILPFGDQFWF 334 Y LP QFWF Sbjct: 108 FY------LPKSTQFWF 118
>NELFA_DROME (Q86NP2) Negative elongation factor A homolog| Length = 1248 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +1 Query: 259 VLPQAHPVPVLGGEAHPALRRPVLVQVPLWLADAPQGVPAQGHPGRRHQ 405 ++ Q P V+G + RPV+ V L PQG+ PG++ Q Sbjct: 997 IVQQQQPTNVIGNSQQQTIIRPVMTNVGGGLTTLPQGLTLIQRPGQQPQ 1045
>Y918_MYCLE (Q9CCE3) UPF0124 protein ML0918| Length = 249 Score = 30.0 bits (66), Expect = 4.7 Identities = 20/57 (35%), Positives = 24/57 (42%) Frame = +1 Query: 301 AHPALRRPVLVQVPLWLADAPQGVPAQGHPGRRHQELLP*QPCHPGHAGAPVQGWRR 471 + PAL + VP+ L+DA GV A H G PC AG WRR Sbjct: 98 SQPALPVVTIHCVPVLLSDARPGVTAAVHVGEGRGSARCASPCDGYDAGPGCVRWRR 154
>DAMX_ECOLI (P11557) Protein damX| Length = 428 Score = 30.0 bits (66), Expect = 4.7 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = +2 Query: 53 AKVPDFVEGMVYNATEG-----VMMTGVYASKEEAKKKGNKINSVGWWFKPW 193 AK + +VY T V+++GVYASKEEAKK + + + PW Sbjct: 365 AKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPW 416
>DAMX_ECO57 (Q8X826) Protein damX| Length = 428 Score = 30.0 bits (66), Expect = 4.7 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = +2 Query: 53 AKVPDFVEGMVYNATEG-----VMMTGVYASKEEAKKKGNKINSVGWWFKPW 193 AK + +VY T V+++GVYASKEEAKK + + + PW Sbjct: 365 AKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAKNPW 416
>PDUW_SALTY (P74879) Probable propionate kinase (EC 2.7.2.15)| Length = 404 Score = 29.3 bits (64), Expect = 8.0 Identities = 16/56 (28%), Positives = 22/56 (39%) Frame = +1 Query: 238 GVHPYEGVLPQAHPVPVLGGEAHPALRRPVLVQVPLWLADAPQGVPAQGHPGRRHQ 405 G+H + +LP A V V H L P + W A G+ G G H+ Sbjct: 129 GIHVFRQLLPDAPSVAVFDTAFHQTLDEPAYIYPLPWHYYAELGIRRYGFHGTSHK 184
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 29.3 bits (64), Expect = 8.0 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Frame = +1 Query: 292 GGEAHPALRRPVLVQVPLWLADAP-----QGVPAQGHPGRRHQELLP*QPCHPGHAGAP 453 G P LR P Q P L P +G P G PG ++ LP P PG GAP Sbjct: 1041 GLPGQPGLRGP---QGPPGLPGLPGLKGDEGQPGYGAPGLMGEKGLPGLPGKPGRPGAP 1096
>RL37A_METKA (Q8TYC3) 50S ribosomal protein L37Ae| Length = 89 Score = 29.3 bits (64), Expect = 8.0 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = +3 Query: 447 CPCTRLETLWSLFTRKWRCTRCGCALTG 530 CP + + T WRCT+CG TG Sbjct: 38 CPVCHKRAVKRVGTGIWRCTKCGAEFTG 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,996,074 Number of Sequences: 219361 Number of extensions: 1516653 Number of successful extensions: 5427 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5401 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
