ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags34m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLAP2_CAEEL (Q02328) Protein SLA2 homolog 30 5.9
2O1082_RAT (P23268) Olfactory receptor 1082 (Olfactory receptor-l... 30 5.9
3ASSY_SHEON (Q8EK28) Argininosuccinate synthase (EC 6.3.4.5) (Cit... 30 5.9

>SLAP2_CAEEL (Q02328) Protein SLA2 homolog|
          Length = 927

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 588 PTETDYKCLNRPLTRVLHRWKHIEQAGYKPFIQRKLPQKKQKI-IHNVFP 442
           P ET Y+ +NR  T++   WKH+  +GY P I+        ++  HN +P
Sbjct: 86  PEET-YRYVNR-FTQLSQFWKHLNTSGYGPCIESYCKLLHDRVTFHNKYP 133



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>O1082_RAT (P23268) Olfactory receptor 1082 (Olfactory receptor-like protein|
           F12)
          Length = 317

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +1

Query: 400 YLDYWSALCFGIVAGEYIVYYLLLFLWKFSLYERFVASLLNMLPSVQYSGERSV*AFIVG 579
           Y+     LC+ ++    +   LLL  W  S++  F+ SL+ +   + + G+  +  F   
Sbjct: 124 YVAXCHPLCYTVIVNHRLCILLLLLSWVISIFHAFIQSLIVL--QLTFCGDVKIPHF--- 178

Query: 580 FCWL--VRNLLCGHSWKFH 630
           FC L  +  L C  ++  H
Sbjct: 179 FCELNQLSQLTCSDNFPSH 197



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>ASSY_SHEON (Q8EK28) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 407

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 172 IYHTPSTCFHWHHDEGGLRDTWTSCSSGPARCLGTIISRP--VPDSSQYASRVASSG 8
           IY   +  FH  H+ G L D W      P++ + T+ + P   P+ ++Y S    +G
Sbjct: 183 IYSRDANAFHISHEGGELEDPWNE----PSKGVWTLTADPEDAPNQAEYVSLEVENG 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,942,385
Number of Sequences: 219361
Number of extensions: 1979895
Number of successful extensions: 5039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5037
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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