ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags35a22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (C... 46 4e-05
2GRPE_ACHLA (Q8L399) Protein grpE (HSP-70 cofactor) 31 1.2
3ZBT11_HUMAN (O95625) Zinc finger and BTB domain-containing prote... 30 2.0
4EFTU_WIGBR (Q8D240) Elongation factor Tu (EF-Tu) 30 2.6
5HEMA_IAPUE (P03452) Hemagglutinin precursor [Contains: Hemagglut... 29 4.4
6EFTU_CHLPN (Q9Z9A7) Elongation factor Tu (EF-Tu) 29 4.4
7MIS6_SCHPO (P87227) Inner centromere protein mis6 29 5.8
8EFTS_DESVH (Q72DQ6) Elongation factor Ts (EF-Ts) 28 7.6
9JHD1_CAEEL (Q95Q98) JmjC domain-containing histone demethylation... 28 9.9
10EFTU_CHLCV (Q822I4) Elongation factor Tu (EF-Tu) 28 9.9

>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell|
           death-related protein SPL11)
          Length = 694

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = +1

Query: 7   QFKYVTWQLQAALTNLPHNCFQISDEVQEEVDLVRGQLKREMEKKGALDLNIFSKIHDIL 186
           +F+ V  QL+ AL ++P+N   ISDEV+E+V+LV  QLKR  E+   +D+      +D+L
Sbjct: 122 KFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKER---IDMPDDEFYNDLL 178

Query: 187 AHHVDNVGSQSE 222
           + +  N    +E
Sbjct: 179 SVYDKNYDPSAE 190



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>GRPE_ACHLA (Q8L399) Protein grpE (HSP-70 cofactor)|
          Length = 190

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 103 LVRGQLKREMEKKGALDLNIFSKIHDILAHHVDNVGSQSEEPN 231
           ++R Q K  +E +G +++    ++ D   HH     S  ++PN
Sbjct: 112 MIRDQFKSVLENEGVVEIKALGEVFDAKVHHAIEKESNKDKPN 154



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>ZBT11_HUMAN (O95625) Zinc finger and BTB domain-containing protein 11|
          Length = 1053

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 22/87 (25%), Positives = 42/87 (48%)
 Frame = +1

Query: 19  VTWQLQAALTNLPHNCFQISDEVQEEVDLVRGQLKREMEKKGALDLNIFSKIHDILAHHV 198
           V+ + ++AL+++   C   S    E VDL+    + E+E     + N  S IH  L+   
Sbjct: 388 VSSEAESALSSV--GCIADSHPEMESVDLITKNNQTELETSNNRENNTVSNIHPKLSK-- 443

Query: 199 DNVGSQSEEPNSQPETLPLENVSSDHL 279
           +NV S S E +     +  E++ ++ +
Sbjct: 444 ENVISSSPEDSGMGNDISAEDICAEDI 470



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>EFTU_WIGBR (Q8D240) Elongation factor Tu (EF-Tu)|
          Length = 394

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +1

Query: 91  EEVDLVRGQLKREMEKKGALDLNIFSKIHDILAHHVDNVGSQSEEPNSQPETLPLENVSS 270
           +E+ ++RG   + +EK    D     KI D L+ H+DN   + +    QP  LP+E+V S
Sbjct: 166 DEIPIIRGSALKALEK----DPIWIQKIID-LSEHLDNYIPEPKRIIDQPFLLPIEDVFS 220



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>HEMA_IAPUE (P03452) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 566

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 248 NVSGWLFGSSDCDPTL 201
           N++GWL G+ +CDP L
Sbjct: 73  NIAGWLLGNPECDPLL 88



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>EFTU_CHLPN (Q9Z9A7) Elongation factor Tu (EF-Tu)|
          Length = 393

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
 Frame = +1

Query: 73  ISDEVQEEVDLVRGQLKREMEKKG----------AL-----DLNIFSKIHDILAHHVDNV 207
           IS E  E +DLV  +L   +E+KG          AL     D N   K+ +++    DN+
Sbjct: 140 ISQEDAELIDLVEMELSELLEEKGYKGCPIIRGSALKALEGDANYIEKVRELMQAVDDNI 199

Query: 208 GSQSEEPNSQPETLPLENVSS 270
            +   E + +P  +P+E+V S
Sbjct: 200 PTPEREID-KPFLMPIEDVFS 219



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>MIS6_SCHPO (P87227) Inner centromere protein mis6|
          Length = 672

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 226 VLQIVTRHYQHDELRYHEFLKKYLDQGHPSSPFL 125
           +L ++T+HY     R H+ L  Y   G+ + P+L
Sbjct: 153 LLVLLTKHYHVKSFRIHQLLALYQKPGNTADPYL 186



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>EFTS_DESVH (Q72DQ6) Elongation factor Ts (EF-Ts)|
          Length = 287

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 112 GQLKREMEKKGALDLNIFSKIHDILAHHVDNVGS 213
           G+L  ++  KGALD +  + I+DI+A   +N+GS
Sbjct: 95  GKLAEQVATKGALDESAQTAINDIIATLGENMGS 128



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>JHD1_CAEEL (Q95Q98) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1076

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 79  DEVQEEVDLVRGQLKREMEK-KGALDLNIFSKIHDILAHHVDNVGSQSEEPNSQPE 243
           D   E + L  GQLK    K K  ++L+I   ++ I        GSQS E + +PE
Sbjct: 755 DPRMEMMKLGTGQLKSAYRKTKNNVELHIEKNLYKIEPKRGSEEGSQSREQSMEPE 810



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>EFTU_CHLCV (Q822I4) Elongation factor Tu (EF-Tu)|
          Length = 393

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
 Frame = +1

Query: 73  ISDEVQEEVDLVRGQLKREMEKKG----------AL-----DLNIFSKIHDILAHHVDNV 207
           IS E  E VDLV  +L   +E+KG          AL     D +   KI +++    DN+
Sbjct: 140 ISQEDAELVDLVEMELSELLEEKGYKGCPIIRGSALKALEGDASYVEKIRELMQAVDDNI 199

Query: 208 GSQSEEPNSQPETLPLENVSS 270
            +   E + +P  +P+E+V S
Sbjct: 200 PTPEREVD-KPFLMPIEDVFS 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,910,275
Number of Sequences: 219361
Number of extensions: 945373
Number of successful extensions: 2017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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