ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags34l14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
3dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
4dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
5dbj|AK107485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.082
6dbj|AK104670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.082
7dbj|AK099886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.082
8dbj|AK068642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.082
9tpe|BN000555.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 46 0.082
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.082
11emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.082
12emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on ch... 44 0.32
13gb|BT016251.1| Zea mays clone Contig84 mRNA sequence 42 1.3
14gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 42 1.3
15gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 1.3
16gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Canc... 42 1.3
17gb|AY104505.1| Zea mays PCO140706 mRNA sequence 42 1.3
18gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.3
19dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.3
20gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.1
21gb|BC074603.1| Xenopus tropicalis keratinocyte associated protei... 40 5.1
22gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.1
23gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
24gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
25gb|AC123646.8| Mus musculus chromosome 19, clone RP23-104P24, co... 40 5.1
26gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 5.1
27gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 5.1
28emb|CR450748.10| Zebrafish DNA sequence from clone CH211-157P5, ... 40 5.1
29gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 5.1
30ref|NM_001005626.1| Xenopus tropicalis keratinocyte associated p... 40 5.1
31emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 40 5.1
32gb|AC068898.8| Homo sapiens chromosome 10 clone RP11-534L6, comp... 40 5.1
33gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, comp... 40 5.1
34gb|AC016017.14| Mus Musculus Strain C57BL6/J Chromosome 6 BAC Cl... 40 5.1
35gb|AC035139.11| Homo sapiens chromosome 10 clone RP11-563N6, com... 40 5.1
36gb|AC022533.10| Homo sapiens chromosome 10 clone RP11-230D19, co... 40 5.1
37dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
38dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 5.1
39emb|BX649419.6| Zebrafish DNA sequence from clone CH211-106J5 in... 40 5.1
40emb|CR855774.2| Xenopus tropicalis finished cDNA, clone TGas102g13 40 5.1
41gb|AC079438.30| Mus musculus strain C57BL/6J chromosome 6 clone ... 40 5.1
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
43gb|AC124756.4| Mus musculus BAC clone RP23-115J2 from 6, complet... 40 5.1 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 286      ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 328
                |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 23453990 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 23454032
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 38      ctcctcctcgccgtggcgctggc 60
               |||||||||||||||||||||||
Sbjct: 7760216 ctcctcctcgccgtggcgctggc 7760238
to top
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_A12
          Length = 149089

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 38    ctcctcctcgccgtggcgctggc 60
             |||||||||||||||||||||||
Sbjct: 96481 ctcctcctcgccgtggcgctggc 96503
to top
>dbj|AP005698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OSJNBb0006L10
          Length = 171115

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 38  ctcctcctcgccgtggcgctggc 60
           |||||||||||||||||||||||
Sbjct: 579 ctcctcctcgccgtggcgctggc 601
to top
>dbj|AK107485.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C08, full
           insert sequence
          Length = 800

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 286 ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 328
           |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 306 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 348
to top
>dbj|AK104670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A04, full
           insert sequence
          Length = 1184

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 38  ctcctcctcgccgtggcgctggc 60
           |||||||||||||||||||||||
Sbjct: 97  ctcctcctcgccgtggcgctggc 119
to top
>dbj|AK099886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112B18, full
           insert sequence
          Length = 1230

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 38  ctcctcctcgccgtggcgctggc 60
           |||||||||||||||||||||||
Sbjct: 125 ctcctcctcgccgtggcgctggc 147
to top
>dbj|AK068642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157D18, full
           insert sequence
          Length = 1171

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 38  ctcctcctcgccgtggcgctggc 60
           |||||||||||||||||||||||
Sbjct: 98  ctcctcctcgccgtggcgctggc 120
to top
>tpe|BN000555.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx26 gene
          for class III peroxidase 26 precursor, exons 1-3
          Length = 1175

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 38 ctcctcctcgccgtggcgctggc 60
          |||||||||||||||||||||||
Sbjct: 46 ctcctcctcgccgtggcgctggc 68
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 286      ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 328
                |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 23382181 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 23382223
to top
>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 162261

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 286   ggagttccacctcgggtacgacggcggggcgtggtaccaggtg 328
             |||||||||| ||||   ||||||||| |||||||||||||||
Sbjct: 48169 ggagttccacgtcggccccgacggcggcgcgtggtaccaggtg 48127
to top
>emb|AL672236.18| Mouse DNA sequence from clone RP23-206L21 on chromosome 11 Contains a
              ribosomal protein S6 (Rps6) pseudogene, a novel gene, the
              gene for a novel immunoglobulin domain containing protein
              and two CpG islands, complete sequence
          Length = 219893

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 206    ctgctccgccagggcacccacgtttcgttc 235
              |||||| |||||||||||||||||| ||||
Sbjct: 120600 ctgctctgccagggcacccacgtttggttc 120629
to top
>gb|BT016251.1| Zea mays clone Contig84 mRNA sequence
          Length = 943

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 gtgacggtgcagaacctgtgc 139
           |||||||||||||||||||||
Sbjct: 187 gtgacggtgcagaacctgtgc 207
to top
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 153    ccctcggcatcgagccgctgg 173
              |||||||||||||||||||||
Sbjct: 189142 ccctcggcatcgagccgctgg 189122
to top
>gb|AC079277.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-65N7, complete
            sequence
          Length = 190328

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 169  gctggccaacagcaagctcct 189
            |||||||||||||||||||||
Sbjct: 1826 gctggccaacagcaagctcct 1806
to top
>gb|AC153909.5| Mus musculus 6 BAC RP23-190O15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226538

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 169    gctggccaacagcaagctcct 189
              |||||||||||||||||||||
Sbjct: 114179 gctggccaacagcaagctcct 114199
to top
>gb|AY104505.1| Zea mays PCO140706 mRNA sequence
          Length = 933

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 gtgacggtgcagaacctgtgc 139
           |||||||||||||||||||||
Sbjct: 185 gtgacggtgcagaacctgtgc 205
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 45      tcgccgtggcgctggcagcca 65
               |||||||||||||||||||||
Sbjct: 3851261 tcgccgtggcgctggcagcca 3851281
to top
>dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-94H14, complete
              sequence
          Length = 142000

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 18     tctccaagcccctggctgctctcct 42
              ||||||||||||||||| |||||||
Sbjct: 117436 tctccaagcccctggcttctctcct 117412
to top
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     gccgtggcgctggcagccac 66
              ||||||||||||||||||||
Sbjct: 129590 gccgtggcgctggcagccac 129571
to top
>gb|BC074603.1| Xenopus tropicalis keratinocyte associated protein 3, mRNA (cDNA
           clone MGC:69253 IMAGE:5308098), complete cds
          Length = 1131

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  ctcctcctcgccgtggcgct 57
           ||||||||||||||||||||
Sbjct: 373 ctcctcctcgccgtggcgct 392
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     ccccggccacctgctccgcc 215
               ||||||||||||||||||||
Sbjct: 4334310 ccccggccacctgctccgcc 4334329
to top
>gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062M03
              map near S6115, complete sequence
          Length = 138223

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ctcctcctcgccgtggcgct 57
              ||||||||||||||||||||
Sbjct: 129495 ctcctcctcgccgtggcgct 129514
to top
>gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0060D22
              map near S6115, complete sequence
          Length = 139929

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ctcctcctcgccgtggcgct 57
              ||||||||||||||||||||
Sbjct: 101349 ctcctcctcgccgtggcgct 101330
to top
>gb|AC123646.8| Mus musculus chromosome 19, clone RP23-104P24, complete sequence
          Length = 189534

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    tctccatcaccccgcacggc 379
              ||||||||||||||||||||
Sbjct: 143492 tctccatcaccccgcacggc 143473
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     gacctctccctcggcatcga 165
               ||||||||||||||||||||
Sbjct: 1380785 gacctctccctcggcatcga 1380766
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 264     aggtgcaggacgccgtggtg 283
               ||||||||||||||||||||
Sbjct: 2997521 aggtgcaggacgccgtggtg 2997540
to top
>emb|CR450748.10| Zebrafish DNA sequence from clone CH211-157P5, complete sequence
          Length = 191667

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   agctcctctacagccccggc 202
             ||||||||||||||||||||
Sbjct: 20856 agctcctctacagccccggc 20875
to top
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     cggcatcgagccgctggcca 176
               ||||||||||||||||||||
Sbjct: 2936786 cggcatcgagccgctggcca 2936805
to top
>ref|NM_001005626.1| Xenopus tropicalis keratinocyte associated protein 3 (krtcap3),
           mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  ctcctcctcgccgtggcgct 57
           ||||||||||||||||||||
Sbjct: 373 ctcctcctcgccgtggcgct 392
to top
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    cggccacctgctccgccagg 218
              ||||||||||||||||||||
Sbjct: 274044 cggccacctgctccgccagg 274025
to top
>gb|AC068898.8| Homo sapiens chromosome 10 clone RP11-534L6, complete sequence
          Length = 176188

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     ggcaggacccccagaactgt 103
              ||||||||||||||||||||
Sbjct: 142360 ggcaggacccccagaactgt 142341
to top
>gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, complete sequence
          Length = 85927

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cctggctgctctcctcctcg 47
             ||||||||||||||||||||
Sbjct: 72158 cctggctgctctcctcctcg 72177
to top
>gb|AC016017.14| Mus Musculus Strain C57BL6/J Chromosome 6 BAC Clone RP23-274F23,
            complete sequence
          Length = 184892

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   agcccctggctgctctcctc 43
            ||||||||||||||||||||
Sbjct: 2412 agcccctggctgctctcctc 2431
to top
>gb|AC035139.11| Homo sapiens chromosome 10 clone RP11-563N6, complete sequence
          Length = 210472

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   ggcaggacccccagaactgt 103
            ||||||||||||||||||||
Sbjct: 6243 ggcaggacccccagaactgt 6224
to top
>gb|AC022533.10| Homo sapiens chromosome 10 clone RP11-230D19, complete sequence
          Length = 174569

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     ggcaggacccccagaactgt 103
              ||||||||||||||||||||
Sbjct: 131314 ggcaggacccccagaactgt 131333
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 38       ctcctcctcgccgtggcgct 57
                ||||||||||||||||||||
Sbjct: 12274148 ctcctcctcgccgtggcgct 12274167
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 324    aggtgagcaccgaccagtcgcgca 347
              |||||| |||||||||||||||||
Sbjct: 412658 aggtgaccaccgaccagtcgcgca 412681
to top
>emb|BX649419.6| Zebrafish DNA sequence from clone CH211-106J5 in linkage group 22,
              complete sequence
          Length = 172908

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    agctcctctacagccccggc 202
              ||||||||||||||||||||
Sbjct: 102835 agctcctctacagccccggc 102854
to top
>emb|CR855774.2| Xenopus tropicalis finished cDNA, clone TGas102g13
          Length = 1106

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  ctcctcctcgccgtggcgct 57
           ||||||||||||||||||||
Sbjct: 354 ctcctcctcgccgtggcgct 373
to top
>gb|AC079438.30| Mus musculus strain C57BL/6J chromosome 6 clone rp23-176m22, complete
              sequence
          Length = 209643

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     agcccctggctgctctcctc 43
              ||||||||||||||||||||
Sbjct: 150680 agcccctggctgctctcctc 150661
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 38       ctcctcctcgccgtggcgct 57
                ||||||||||||||||||||
Sbjct: 12353455 ctcctcctcgccgtggcgct 12353474
to top
>gb|AC124756.4| Mus musculus BAC clone RP23-115J2 from 6, complete sequence
          Length = 213833

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    agcccctggctgctctcctc 43
             ||||||||||||||||||||
Sbjct: 42391 agcccctggctgctctcctc 42372


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,337,683
Number of Sequences: 3902068
Number of extensions: 2337683
Number of successful extensions: 53302
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52664
Number of HSP's gapped (non-prelim): 638
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top