>ZN687_HUMAN (Q8N1G0) Zinc finger protein 687|
          Length = 1237

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 47  QPGRHADRLPPAAPAFVSRSLHRPPP 124
           +PG H+D LPP+AP+        PPP
Sbjct: 169 EPGDHSDPLPPSAPSPTREGALTPPP 194

>SOCS7_MOUSE (Q8VHQ2) Suppressor of cytokine signaling 7 (SOCS-7)|
          Length = 579

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 19/48 (39%), Positives = 19/48 (39%)
 Frame = +2

Query: 26  SLPAPLRQPGRHADRLPPAAPAFVSRSLHRPPPLHWTGSGVRMISSCF 169
           S P P   P    D  P  AP   S SLH  PP H      R  SS F
Sbjct: 339 SFPLPPPPPPHAPDAFPRIAPIRASESLHSQPPQHLQCPLYRPDSSSF 386

>PROC_THET2 (P54893) Pyrroline-5-carboxylate reductase (EC 1.5.1.2) (P5CR) (P5C|
           reductase)
          Length = 261

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -3

Query: 124 GRRAMKAARDERGSRRGQPVGVAARLPERCREA----GIAHLVRA 2
           GR  +K A  ERG  R + VGV  R PER RE     G+  L RA
Sbjct: 12  GRSILKGAL-ERGFLRPEEVGVLGRTPERSRELAEPFGVRPLTRA 55

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = +2

Query: 32  PAPLRQPGRHADRL--PPAAPAFVS---RSLHRPPPLHW 133
           P P RQP         PP+ P F     R +H PPP HW
Sbjct: 514 PPPHRQPRPPTPTYGQPPSPPTFSPPPPRQIHSPPPPHW 552

>THYG_HUMAN (P01266) Thyroglobulin precursor|
          Length = 2768

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 71   LPPAAPAFVSRSLHRPPPLHWTGS 142
            +P AAP    R    P PL+WTGS
Sbjct: 2231 VPYAAPPLAERRFQAPEPLNWTGS 2254

>SOCS7_HUMAN (O14512) Suppressor of cytokine signaling 7 (SOCS-7) (Nck, Ash and|
           phospholipase C gamma-binding protein) (Nck-associated
           protein 4) (NAP-4) (Fragment)
          Length = 485

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = +2

Query: 26  SLPAPLRQPGRHADRLPPAAPAFVSRSLHRPPPLHWTGSGVRMISSCF 169
           S P P   P    D  P  AP   + SLH  PP H      R  SS F
Sbjct: 218 SFPLPPPPPPHAPDAFPRIAPIRAAESLHSQPPQHLQCPLYRPDSSSF 265

>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 11  QVRYASLPAPLRQPGRHADRLPPAAPAFVSRSLHRPPPLHWTGSGV 148
           QV  A+LP PL   G  A +LP   P      LH  PP   T +G+
Sbjct: 823 QVPGAALPNPLNMLGPQASQLP--CPPVTQSPLHPTPPPASTAAGM 866

>DNAA_STRRE (Q9ZH76) Chromosomal replication initiator protein dnaA|
          Length = 643

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 32  PAPLRQPGRHADRLPPAAPAFVSRSLHRPPPLHW 133
           P P + P    D+LP   PA+ S   HRP P  W
Sbjct: 138 PRPEQLPSARPDQLPTVRPAYPS-EYHRPEPGAW 170

>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 476

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 178 FDHEARRNHPNPRAGPVEGRRAMKAARDERGSRRGQPV 65
           F    R NHP  R G   G  A  AA  +   R GQP+
Sbjct: 76  FGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPI 113

>HIS4_PYRAE (Q8ZY14) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 229

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -3

Query: 130 VEGRRAMKAARDERGSR--RGQPVGVAARLPERCREAGIAHLV 8
           +EG RA+K  R +RG+   +G P+ +AAR     R+A + H+V
Sbjct: 8   IEGGRAVKRIRGQRGNYIFQGDPLELAARF----RKAPLVHVV 46

>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor|
          Length = 1385

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
 Frame = +3

Query: 3   ALTRCAM--PASRHLSGSRAA----------TPTGCPRRLPRSSLAAFIALLPS 128
           A++RCA   P +R L+G   A          +  G P   PR  +AA  ALLPS
Sbjct: 116 AISRCAAGSPLARLLTGPHGAASATGAGSHSSSAGAPTPTPRPDIAAAAALLPS 169

>GASR_MOUSE (P56481) Gastrin/cholecystokinin type B receptor (CCK-B receptor)|
           (CCK-BR) (Cholecystokinin-2 receptor) (CCK2-R)
          Length = 453

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 33  RHLSGSRAATPTGCPRRLPRSSLAAFIALLPSTGPARG 146
           RH++        GC  +LPRS L       P+TGP  G
Sbjct: 286 RHVTSLTGEDSDGCYVQLPRSRLEMTTLTTPTTGPGPG 323

>CT166_HUMAN (Q9H1L0) Protein C20orf166|
          Length = 117

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -3

Query: 145 PRAGPVEGRRAMKAARDERGSRRGQPVGVAARLPERCREAGIAHL 11
           P AGP    R  + AR E GS RGQ + V+  +    +E   AHL
Sbjct: 14  PAAGPAAVERTQQVARGEPGSARGQ-LQVSPEMSITHKEKENAHL 57

>KR1_BHV1S (Q08097) Serine/threonine-protein kinase (EC 2.7.11.1)|
          Length = 467

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = -3

Query: 121 RRAMKAARDERGSRRGQPVGVAARLPERCREAGIAHLVRA 2
           R A   A +  GSR GQ V  AA  P RC   G A L  A
Sbjct: 20  RFACCVAAEPSGSRLGQSVRGAAAAPARCAAEGSADLYLA 59

>SEC2_SCHPO (O13930) Rab guanine nucleotide exchange factor sec2 (GDP-GTP|
           exchange factor sec2)
          Length = 527

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +2

Query: 56  RHADRLPPAAPAFVSRS-----LHRPPPLHWTGSGVRMISSCFV 172
           R +   PP +P  +S S     +H P P H + S +  ++ CF+
Sbjct: 278 RSSSTSPPRSPLIISDSPSSSIIHNPHPTHPSASAMNYMNPCFL 321

>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 15  CAMPASRHLSGSRAATPTGCPRRLPRSSLAAFIALLPSTGPA 140
           C+  AS   S S A+TP+G P     +S AA  ALL  TG A
Sbjct: 299 CSSSASSCSSASAASTPSGAPTCC--ASAAAAAALLYGTGGA 338

>RL5_PYRAE (Q8ZSU7) 50S ribosomal protein L5P|
          Length = 179

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 121 RRAMKAARDERGSRRGQPVGVAARLPERCREAGIAHLVRA 2
           RRA K+ +D  G R+G+P+GVA  L    R+  +  L+RA
Sbjct: 54  RRAKKSIKDF-GIRKGEPIGVAVTLR---RDQAVNFLMRA 89

>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2|
          Length = 1516

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 151  PNPRAGPVEGRRAMKAARDERGSRRGQP 68
            P PR G VEG  A  A+ +  G  RG P
Sbjct: 1315 PPPREGVVEGAEACPASEEALGRERGWP 1342

>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 151  PNPRAGPVEGRRAMKAARDERGSRRGQP 68
            P PR G VEG  A  A  +  G  RG P
Sbjct: 1313 PPPREGVVEGAEACPAPEEALGQERGWP 1340

>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 27  ASRHLSGSRAATPTGCPRRLPRSSLAAFIALLPSTGPA 140
           ASR LS S+ + P G P   P +S     +  P  GPA
Sbjct: 788 ASRPLSASQPSLPHGAPAPSPAASARPASSSTPRLGPA 825


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,012,526
Number of Sequences: 219361
Number of extensions: 408334
Number of successful extensions: 1930
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)