Clone Information

BLAST Search Result

Clone Name	bags34i13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_511015.1\| PREDICTED: Pan troglodytes similar to chemokine...	44	0.15
2	gb\|AC018557.9\| Homo sapiens chromosome 16 clone RP11-63M22, comp...	44	0.15
3	gb\|AC010542.7\| Homo sapiens chromosome 16 clone RP11-403P17, com...	44	0.15
4	emb\|AL365400.19\| Human DNA sequence from clone RP11-471G13 on ch...	42	0.58
5	gb\|CP000359.1\| Deinococcus geothermalis DSM 11300, complete genome	40	2.3
6	emb\|AL035659.22\|HS979N1 Human DNA sequence from clone RP5-979N1 ...	40	2.3
7	emb\|Z86099.2\|HSV2HG52 Herpes simplex virus type 2 (strain HG52),...	40	2.3
8	gb\|CP000076.1\| Pseudomonas fluorescens Pf-5, complete genome	40	2.3
9	dbj\|AK023849.1\| Homo sapiens cDNA FLJ13787 fis, clone PLACE4000670	40	2.3
10	dbj\|AK086131.1\| Mus musculus 15 days embryo head cDNA, RIKEN ful...	40	2.3
11	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	2.3
12	gb\|AC139353.3\| Homo sapiens chromosome 19 clone LLNLR-257F11, co...	40	2.3
13	gb\|AC114732.5\| Homo sapiens BAC clone RP13-1012F16 from 2, compl...	40	2.3
14	dbj\|BA000028.3\| Oceanobacillus iheyensis HTE831 DNA, complete ge...	40	2.3
15	dbj\|AP005473.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	2.3
16	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	2.3
17	gb\|M63796.1\|HUMMMDA Human DNA from cosmid MMDA from chromosome 1...	40	2.3
18	ref\|XM_324411.1\| Neurospora crassa OR74A predicted protein (NCU0...	38	9.0
19	ref\|XM_951336.1\| Neurospora crassa OR74A hypothetical protein (N...	38	9.0
20	ref\|XM_656860.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	38	9.0
21	gb\|BC096518.1\| Xenopus tropicalis hypothetical protein LOC613058...	38	9.0
22	ref\|XM_800999.1\| Trypanosoma cruzi strain CL Brener hypothetical...	38	9.0
23	gb\|AY113672.1\| Linuparus trigonus 28S ribosomal RNA gene, partia...	38	9.0
24	gb\|CP000270.1\| Burkholderia xenovorans LB400 chromosome 1, compl...	38	9.0
25	emb\|AL138807.12\| Human DNA sequence from clone RP5-827A12 on chr...	38	9.0
26	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	38	9.0
27	emb\|BX950851.1\| Erwinia carotovora subsp. atroseptica SCRI1043, ...	38	9.0
28	gb\|AY701414.1\| Pavlova lutheri beta-ketoacyl-CoA synthase mRNA, ...	38	9.0
29	emb\|AL939112.1\|SCO939112 Streptomyces coelicolor A3(2) complete ...	38	9.0
30	emb\|AJ698388.1\| Euplotes vannus macronuclear ORF for hyptothetic...	38	9.0
31	ref\|XM_691991.1\| PREDICTED: Danio rerio similar to zinc finger p...	38	9.0
32	gb\|AF079317.1\| Sphingomonas aromaticivorans plasmid pNL1, comple...	38	9.0
33	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	38	9.0
34	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	38	9.0
35	emb\|BX842600.1\| Neurospora crassa DNA linkage group II BAC clone...	38	9.0
36	gb\|AC154769.2\| Mus musculus BAC clone RP24-447K12 from 17, compl...	38	9.0
37	dbj\|AP003847.3\| Oryza sativa (japonica cultivar-group) genomic D...	38	9.0
38	emb\|CR848269.1\| Xenopus tropicalis finished cDNA, clone TNeu044l04	38	9.0
39	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	38	9.0
40	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	38	9.0
41	gb\|U78289.1\|SFU78289 Streptomyces fradiae tylactone synthase, st...	38	9.0
42	gb\|DQ079802.1\| Nephropsis aculeata voucher KC2117 28S large subu...	38	9.0
43	dbj\|AB070942.1\| Streptomyces avermitilis polyketide-2 biosynthet...	38	9.0

>ref|XM_511015.1| PREDICTED: Pan troglodytes similar to chemokine-like factor
           superfamily 3 isoform a (LOC454146), mRNA
          Length = 1581

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 107 cttcatcgccctcctcccctcc 128
           ||||||||||||||||||||||
Sbjct: 528 cttcatcgccctcctcccctcc 549

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>gb|AC018557.9| Homo sapiens chromosome 16 clone RP11-63M22, complete sequence
          Length = 180709

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 107   cttcatcgccctcctcccctcc 128
             ||||||||||||||||||||||
Sbjct: 44104 cttcatcgccctcctcccctcc 44125

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>gb|AC010542.7| Homo sapiens chromosome 16 clone RP11-403P17, complete sequence
          Length = 188460

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 107    cttcatcgccctcctcccctcc 128
              ||||||||||||||||||||||
Sbjct: 127349 cttcatcgccctcctcccctcc 127370

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>emb|AL365400.19| Human DNA sequence from clone RP11-471G13 on chromosome Xq21.32-22.1
             Contains a novel pseudogene,  a heterogeneous nuclear
             ribonucleoprotein D-like (HNRPDL) pseudogene and a
             ribosomal protein S7 (RPS7) pseudogene, complete sequence
          Length = 176391

 Score = 42.1 bits (21), Expect = 0.58
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   ttcggatgatttcttcttgct 167
             |||||||||||||||||||||
Sbjct: 20450 ttcggatgatttcttcttgct 20470

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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ccgccacgccgaccggctgc 74
               ||||||||||||||||||||
Sbjct: 2334060 ccgccacgccgaccggctgc 2334079

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>emb|AL035659.22|HS979N1 Human DNA sequence from clone RP5-979N1 on chromosome 22q13.1-13.32,
             complete sequence
          Length = 102151

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ggctgcccccggcggctccc 88
             ||||||||||||||||||||
Sbjct: 36018 ggctgcccccggcggctccc 35999

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>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome
          Length = 154746

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    cccgcgttcgtctctcgcag 105
             ||||||||||||||||||||
Sbjct: 16572 cccgcgttcgtctctcgcag 16553

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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 48      agccgggccgccacgccgaccggc 71
               ||||||| ||||||||||||||||
Sbjct: 3435527 agccgggacgccacgccgaccggc 3435550



 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 47      cagccgggccgccacgccg 65
               |||||||||||||||||||
Sbjct: 2647063 cagccgggccgccacgccg 2647081

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>dbj|AK023849.1| Homo sapiens cDNA FLJ13787 fis, clone PLACE4000670
          Length = 5266

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  ggctgcccccggcggctccc 88
           ||||||||||||||||||||
Sbjct: 859 ggctgcccccggcggctccc 840

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>dbj|AK086131.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930007J09 product:unclassifiable, full
           insert sequence
          Length = 2467

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 98  tctcgcagccttcatcgccctcctcccc 125
           |||||| ||| |||||||||||||||||
Sbjct: 544 tctcgccgccgtcatcgccctcctcccc 571

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 112     tcgccctcctcccctccactggac 135
               ||||||||||||||||| ||||||
Sbjct: 2385971 tcgccctcctcccctcccctggac 2385994



 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 98      tctcgcagccttcatcgccctcctccc 124
               |||||| |||||| |||||||||||||
Sbjct: 3312810 tctcgccgccttcttcgccctcctccc 3312784

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>gb|AC139353.3| Homo sapiens chromosome 19 clone LLNLR-257F11, complete sequence
          Length = 38480

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    gcccccggcggctcccgcgt 92
             ||||||||||||||||||||
Sbjct: 11841 gcccccggcggctcccgcgt 11860

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>gb|AC114732.5| Homo sapiens BAC clone RP13-1012F16 from 2, complete sequence
          Length = 91526

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   cctcctcccctccactggac 135
             ||||||||||||||||||||
Sbjct: 29404 cctcctcccctccactggac 29385

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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      ttcgtctctcgcagccttca 111
               ||||||||||||||||||||
Sbjct: 1026071 ttcgtctctcgcagccttca 1026052

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>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0077B15
          Length = 139345

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 112   tcgccctcctcccctccactggac 135
             ||||||||||||||||| ||||||
Sbjct: 88979 tcgccctcctcccctcccctggac 89002

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      ccgccacgccgaccggctgc 74
               ||||||||||||||||||||
Sbjct: 1282897 ccgccacgccgaccggctgc 1282916

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>gb|M63796.1|HUMMMDA Human DNA from cosmid MMDA from chromosome 19q13.3 (obtained by
             automated sequence analysis)
          Length = 37314

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    gcccccggcggctcccgcgt 92
             ||||||||||||||||||||
Sbjct: 27569 gcccccggcggctcccgcgt 27550

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>ref|XM_324411.1| Neurospora crassa OR74A predicted protein (NCU05055.1) partial mRNA
          Length = 1215

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 110 catcgccctcctcccctcc 128
           |||||||||||||||||||
Sbjct: 819 catcgccctcctcccctcc 801

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>ref|XM_951336.1| Neurospora crassa OR74A hypothetical protein (NCU05055.1) partial
           mRNA
          Length = 1215

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 110 catcgccctcctcccctcc 128
           |||||||||||||||||||
Sbjct: 819 catcgccctcctcccctcc 801

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>ref|XM_656860.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4348.2), mRNA
          Length = 720

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 106 ccttcatcgccctcctcccctcc 128
           |||||| ||||||||||||||||
Sbjct: 83  ccttcaacgccctcctcccctcc 105

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>gb|BC096518.1| Xenopus tropicalis hypothetical protein LOC613058, mRNA (cDNA clone
           IMAGE:7016064), partial cds
          Length = 2279

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 105 gccttcatcgccctcctcc 123
           |||||||||||||||||||
Sbjct: 235 gccttcatcgccctcctcc 217

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>ref|XM_800999.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053507933.10) partial mRNA
          Length = 6972

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 47  cagccgggccgccacgccg 65
           |||||||||||||||||||
Sbjct: 803 cagccgggccgccacgccg 821

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>gb|AY113672.1| Linuparus trigonus 28S ribosomal RNA gene, partial sequence
          Length = 737

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  ccgaccggctgcccccggc 81
           |||||||||||||||||||
Sbjct: 82  ccgaccggctgcccccggc 100

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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 53      ggccgccacgccgaccggc 71
               |||||||||||||||||||
Sbjct: 4663179 ggccgccacgccgaccggc 4663197

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>emb|AL138807.12| Human DNA sequence from clone RP5-827A12 on chromosome 20 Contains part
             of the ATP9A (KIAA0611) gene for ATPase class II type 9A
             and a ribosomal protein L29 (RPL29) pseudogene, complete
             sequence
          Length = 67895

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 116   cctcctcccctccactgga 134
             |||||||||||||||||||
Sbjct: 24227 cctcctcccctccactgga 24209

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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 53      ggccgccacgccgaccggc 71
               |||||||||||||||||||
Sbjct: 3872360 ggccgccacgccgaccggc 3872342

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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 77      ccggcggctcccgcgttcg 95
               |||||||||||||||||||
Sbjct: 3345290 ccggcggctcccgcgttcg 3345272

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>gb|AY701414.1| Pavlova lutheri beta-ketoacyl-CoA synthase mRNA, complete cds
          Length = 2061

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 53  ggccgccacgccgaccggc 71
           |||||||||||||||||||
Sbjct: 948 ggccgccacgccgaccggc 966

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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 42     tccggcagccgggccgccacgcc 64
              ||||||||| |||||||||||||
Sbjct: 256826 tccggcagcagggccgccacgcc 256804

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>emb|AJ698388.1| Euplotes vannus macronuclear ORF for hyptothetical protein, clone
           96er(1).B7
          Length = 1354

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 151 gatgatttcttcttgcttc 169
           |||||||||||||||||||
Sbjct: 892 gatgatttcttcttgcttc 874

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>ref|XM_691991.1| PREDICTED: Danio rerio similar to zinc finger protein 462
            (LOC568649), partial mRNA
          Length = 6243

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 117  ctcctcccctccactggac 135
            |||||||||||||||||||
Sbjct: 1575 ctcctcccctccactggac 1557

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>gb|AF079317.1| Sphingomonas aromaticivorans plasmid pNL1, complete plasmid sequence
          Length = 184457

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     ccgccacgccgaccggctg 73
              |||||||||||||||||||
Sbjct: 169561 ccgccacgccgaccggctg 169543

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 61      cgccgaccggctgcccccg 79
               |||||||||||||||||||
Sbjct: 3156256 cgccgaccggctgcccccg 3156238



 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 49      gccgggccgccacgccgaccggc 71
               ||||||||||| |||||||||||
Sbjct: 1909004 gccgggccgccccgccgaccggc 1908982

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 37      acctctccggcagccgggccgcc 59
               |||||||||| ||||||||||||
Sbjct: 1759015 acctctccgggagccgggccgcc 1758993

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>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20
          Length = 74452

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 110   catcgccctcctcccctcc 128
             |||||||||||||||||||
Sbjct: 28634 catcgccctcctcccctcc 28652

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>gb|AC154769.2| Mus musculus BAC clone RP24-447K12 from 17, complete sequence
          Length = 157247

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 106   ccttcatcgccctcctcccctcc 128
             |||||||| ||||||||||||||
Sbjct: 48618 ccttcatctccctcctcccctcc 48596

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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1714_H10
          Length = 191580

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 98     tctcgcagccttcatcgccctcctccc 124
              |||||| |||||| |||||||||||||
Sbjct: 122503 tctcgccgccttcttcgccctcctccc 122477

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>emb|CR848269.1| Xenopus tropicalis finished cDNA, clone TNeu044l04
          Length = 1684

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 105 gccttcatcgccctcctcc 123
           |||||||||||||||||||
Sbjct: 160 gccttcatcgccctcctcc 142

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 46      gcagccgggccgccacgccgacc 68
               |||||||||| ||||||||||||
Sbjct: 3936296 gcagccgggcggccacgccgacc 3936318

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     gccgccacgccgaccggct 72
              |||||||||||||||||||
Sbjct: 196332 gccgccacgccgaccggct 196314

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>gb|U78289.1|SFU78289 Streptomyces fradiae tylactone synthase, starter module and modules
             1-7, (tylG) gene, complete cds
          Length = 43280

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    gcccccggcggctcccgcg 91
             |||||||||||||||||||
Sbjct: 37674 gcccccggcggctcccgcg 37692

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>gb|DQ079802.1| Nephropsis aculeata voucher KC2117 28S large subunit ribosomal RNA
           gene, partial sequence
          Length = 1920

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 63  ccgaccggctgcccccggc 81
           |||||||||||||||||||
Sbjct: 734 ccgaccggctgcccccggc 752

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>dbj|AB070942.1| Streptomyces avermitilis polyketide-2 biosynthetic gene cluster
          Length = 27522

 Score = 38.2 bits (19), Expect = 9.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 49    gccgggccgccacgccgaccggc 71
             ||||||||||| |||||||||||
Sbjct: 18804 gccgggccgccccgccgaccggc 18782


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,235,394
Number of Sequences: 3902068
Number of extensions: 1235394
Number of successful extensions: 108291
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107047
Number of HSP's gapped (non-prelim): 1244
length of query: 183
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 161
effective length of database: 17,147,199,772
effective search space: 2760699163292
effective search space used: 2760699163292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result