ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags34h24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469509.1| Oryza sativa (japonica cultivar-group), mRNA 527 e-146
2gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome... 165 2e-37
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 165 2e-37
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
5gb|AC011361.4|AC011361 Homo sapiens chromosome 5 clone CTC-482N1... 44 0.47
6gb|AE006836.1| Sulfolobus solfataricus P2 section 195 of 272 of ... 42 1.9
7gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, com... 42 1.9
8gb|AC121306.12| Mus musculus chromosome 3, clone RP24-100C12, co... 42 1.9
9emb|Z12825.1|MIBVMSCS B.vulgaris CMS-associated mitochondrial DN... 42 1.9
10dbj|BA000024.1| Beta vulgaris subsp. vulgaris mitochondrial geno... 42 1.9
11gb|AC144383.2| Pan troglodytes BAC clone CH251-321N7 from X, com... 40 7.3
12gb|AY495613.1| Botryotinia fuckeliana polyketide synthase (PKS8)... 40 7.3
13gb|AC140265.2| Mus musculus BAC clone RP23-318B18 from chromosom... 40 7.3
14ref|XM_860207.1| PREDICTED: Canis familiaris similar to Centroso... 40 7.3
15ref|XM_539708.2| PREDICTED: Canis familiaris similar to Centroso... 40 7.3
16gb|AC129019.4| Mus musculus BAC clone RP24-541L1 from chromosome... 40 7.3
17gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome... 40 7.3
18gb|AC121859.2| Mus musculus BAC clone RP24-104F15 from 6, comple... 40 7.3
19gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete se... 40 7.3
20emb|BX321878.4| Human DNA sequence from clone XXyac-13CF11 on ch... 40 7.3
21emb|AL670455.3| Human DNA sequence from clone RP13-565O16 on chr... 40 7.3
22emb|X99000.1|CS39KBCIV S.cerevisiae 39kb DNA segment of chromoso... 40 7.3
23emb|BX251411.1| Tropheryma whipplei TW08/27, complete genome; se... 40 7.3
24emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 i... 40 7.3
25gb|AC104663.3| Homo sapiens BAC clone RP11-713M6 from 4, complet... 40 7.3
26gb|AC092812.2| Homo sapiens chromosome 1 clone RP11-536F12, comp... 40 7.3
27gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, compl... 40 7.3
28emb|BX664606.17| Zebrafish DNA sequence from clone CH211-171L17 ... 40 7.3
29emb|AL626778.12| Mouse DNA sequence from clone RP23-326E2 on chr... 40 7.3
30gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 7.3
31gb|AC008463.7| Homo sapiens chromosome 5 clone CTC-352P4, comple... 40 7.3
32gb|AC010329.3|AC010329 Homo sapiens chromosome 19 clone CTD-2626... 40 7.3
33gb|AC154453.2| Mus musculus BAC clone RP24-173C8 from 9, complet... 40 7.3
34gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome 40 7.3
35emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 40 7.3
36emb|Z74254.1|SCYDL206W S.cerevisiae chromosome IV reading frame ... 40 7.3
37dbj|AP001282.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.3
38gb|DQ331359.1| Synthetic construct Saccharomyces cerevisiae clon... 40 7.3
39dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.3
40emb|AL591381.17| Human DNA sequence from clone RP11-690C2 on chr... 40 7.3
41emb|AL732600.4| Human DNA sequence from clone RP11-184E11 on chr... 40 7.3 
>ref|XM_469509.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2064

 Score =  527 bits (266), Expect = e-146
 Identities = 462/526 (87%), Gaps = 1/526 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   aacaacagnatggaagaaaaagttagggagatggttgaaatgaaacagcgaagcttggca 68
           |||||||| ||||| |||||||| || ||||||||||||||||| ||| | || ||||||
Sbjct: 473 aacaacag-atggaggaaaaagtcagagagatggttgaaatgaagcagaggagtttggca 531

                                                                       
Query: 69  gaagatagtcagaaaactcttgaagtcctgaaagatagggaacggtcgttgcaagaccaa 128
           |||||||| |||||||||||||||| ||||||||| ||||| ||| | ||||| ||||| 
Sbjct: 532 gaagatagccagaaaactcttgaagccctgaaagacagggagcgggcattgcaggaccag 591

                                                                       
Query: 129 ctaaggcaagctacagaaagtgtcaagaatatgcagaagctacatgaatcggcacaaagc 188
           ||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||| 
Sbjct: 592 ctaagacaagccacagaaagtgtaaagaatatgcagaagctacatgaatcagcacaaagt 651

                                                                       
Query: 189 caattgtttgagcttcgtactcaatcagaggaggaccggacagcaaaggaagctgaagtg 248
           ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| 
Sbjct: 652 caattgtttgagcttcgtactcaatcagaggaggaccgggctgcaaaggaaactgaagtc 711

                                                                       
Query: 249 agccttctgatggatgaagttgaacgcgctcaatcacgattagttagccttgaaagagaa 308
           |  |||||| |||||||||||||||| || ||| |||| |||||||| ||||| ||||||
Sbjct: 712 aatcttctgttggatgaagttgaacgggcccaagcacgtttagttagtcttgagagagaa 771

                                                                       
Query: 309 aagggggatttacggtctcagttgcagacaacaaatgaagacacaagcaataacagtgat 368
           ||||| |||||||| ||||||||||| ||||||||||||||  ||| |||||  ||||| 
Sbjct: 772 aagggtgatttacgatctcagttgcaaacaacaaatgaagatgcaaccaatagtagtgac 831

                                                                       
Query: 369 tacatggacccaagtgatatacttgagagttctttgattgccaaggagaagattatatca 428
           ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||| || |||
Sbjct: 832 tacgtggactcaagtgatatacttgagagttccttgaatgccaaggagaagatcatctca 891

                                                                       
Query: 429 gagttgaatgcagaactgcgtaacgttgaaagtactttatcaagtgagaaagaaatgcat 488
           ||| ||||||||||||||||||   |||||| |||||||||   ||||| |||||  |||
Sbjct: 892 gagctgaatgcagaactgcgtagtattgaaaatactttatcttctgagagagaaacacat 951

                                                         
Query: 489 gtgaatgaactaaagaagttgactgctttactcagtgagaaggaaa 534
           || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 952 gttaatgaactgaaaaagttgactgctttgctcagtgagaaggaaa 997
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>gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0018H01
             map R1538, complete sequence
          Length = 142712

 Score =  165 bits (83), Expect = 2e-37
 Identities = 149/171 (87%)
 Strand = Plus / Minus

                                                                         
Query: 361   acagtgattacatggacccaagtgatatacttgagagttctttgattgccaaggagaaga 420
             ||||||| ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 32996 acagtgactacgtggactcaagtgatatacttgagagttccttgaatgccaaggagaaga 32937

                                                                         
Query: 421   ttatatcagagttgaatgcagaactgcgtaacgttgaaagtactttatcaagtgagaaag 480
             | || |||||| ||||||||||||||||||   |||||| |||||||||   ||||| ||
Sbjct: 32936 tcatctcagagctgaatgcagaactgcgtagtattgaaaatactttatcttctgagagag 32877

                                                                
Query: 481   aaatgcatgtgaatgaactaaagaagttgactgctttactcagtgagaagg 531
             |||  ||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 32876 aaacacatgttaatgaactgaaaaagttgactgctttgctcagtgagaagg 32826



 Score =  145 bits (73), Expect = 2e-31
 Identities = 103/113 (91%)
 Strand = Plus / Minus

                                                                         
Query: 104   tagggaacggtcgttgcaagaccaactaaggcaagctacagaaagtgtcaagaatatgca 163
             |||||| ||| | ||||| ||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 34038 tagggagcgggcattgcaggaccagctaagacaagccacagaaagtgtaaagaatatgca 33979

                                                                  
Query: 164   gaagctacatgaatcggcacaaagccaattgtttgagcttcgtactcaatcag 216
             ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 33978 gaagctacatgaatcagcacaaagtcaattgtttgagcttcgtactcaatcag 33926



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 77/86 (89%)
 Strand = Plus / Minus

                                                                         
Query: 18    atggaagaaaaagttagggagatggttgaaatgaaacagcgaagcttggcagaagatagt 77
             ||||| |||||||| || ||||||||||||||||| ||| | || |||||||||||||| 
Sbjct: 34240 atggaggaaaaagtcagagagatggttgaaatgaagcagaggagtttggcagaagatagc 34181

                                       
Query: 78    cagaaaactcttgaagtcctgaaaga 103
             |||||||||||||||| |||||||||
Sbjct: 34180 cagaaaactcttgaagccctgaaaga 34155



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 87/100 (87%)
 Strand = Plus / Minus

                                                                         
Query: 213   tcagaggaggaccggacagcaaaggaagctgaagtgagccttctgatggatgaagttgaa 272
             ||||||||||||||| | ||||||||| ||||||| |  |||||| ||||||||||||||
Sbjct: 33825 tcagaggaggaccgggctgcaaaggaaactgaagtcaatcttctgttggatgaagttgaa 33766

                                                     
Query: 273   cgcgctcaatcacgattagttagccttgaaagagaaaagg 312
             || || ||| |||| |||||||| ||||| ||||||||||
Sbjct: 33765 cgggcccaagcacgtttagttagtcttgagagagaaaagg 33726



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 310   agggggatttacggtctcagttgcagacaacaaatgaaga 349
             |||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 33258 agggtgatttacgatctcagttgcaaacaacaaatgaaga 33219
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  165 bits (83), Expect = 2e-37
 Identities = 149/171 (87%)
 Strand = Plus / Plus

                                                                            
Query: 361      acagtgattacatggacccaagtgatatacttgagagttctttgattgccaaggagaaga 420
                ||||||| ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 28380046 acagtgactacgtggactcaagtgatatacttgagagttccttgaatgccaaggagaaga 28380105

                                                                            
Query: 421      ttatatcagagttgaatgcagaactgcgtaacgttgaaagtactttatcaagtgagaaag 480
                | || |||||| ||||||||||||||||||   |||||| |||||||||   ||||| ||
Sbjct: 28380106 tcatctcagagctgaatgcagaactgcgtagtattgaaaatactttatcttctgagagag 28380165

                                                                   
Query: 481      aaatgcatgtgaatgaactaaagaagttgactgctttactcagtgagaagg 531
                |||  ||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 28380166 aaacacatgttaatgaactgaaaaagttgactgctttgctcagtgagaagg 28380216



 Score =  145 bits (73), Expect = 2e-31
 Identities = 103/113 (91%)
 Strand = Plus / Plus

                                                                            
Query: 104      tagggaacggtcgttgcaagaccaactaaggcaagctacagaaagtgtcaagaatatgca 163
                |||||| ||| | ||||| ||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 28379004 tagggagcgggcattgcaggaccagctaagacaagccacagaaagtgtaaagaatatgca 28379063

                                                                     
Query: 164      gaagctacatgaatcggcacaaagccaattgtttgagcttcgtactcaatcag 216
                ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 28379064 gaagctacatgaatcagcacaaagtcaattgtttgagcttcgtactcaatcag 28379116



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 18       atggaagaaaaagttagggagatggttgaaatgaaacagcgaagcttggcagaagatagt 77
                ||||| |||||||| || ||||||||||||||||| ||| | || |||||||||||||| 
Sbjct: 28378802 atggaggaaaaagtcagagagatggttgaaatgaagcagaggagtttggcagaagatagc 28378861

                                          
Query: 78       cagaaaactcttgaagtcctgaaaga 103
                |||||||||||||||| |||||||||
Sbjct: 28378862 cagaaaactcttgaagccctgaaaga 28378887



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                            
Query: 213      tcagaggaggaccggacagcaaaggaagctgaagtgagccttctgatggatgaagttgaa 272
                ||||||||||||||| | ||||||||| ||||||| |  |||||| ||||||||||||||
Sbjct: 28379217 tcagaggaggaccgggctgcaaaggaaactgaagtcaatcttctgttggatgaagttgaa 28379276

                                                        
Query: 273      cgcgctcaatcacgattagttagccttgaaagagaaaagg 312
                || || ||| |||| |||||||| ||||| ||||||||||
Sbjct: 28379277 cgggcccaagcacgtttagttagtcttgagagagaaaagg 28379316



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 310      agggggatttacggtctcagttgcagacaacaaatgaaga 349
                |||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 28379784 agggtgatttacgatctcagttgcaaacaacaaatgaaga 28379823
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  165 bits (83), Expect = 2e-37
 Identities = 149/171 (87%)
 Strand = Plus / Plus

                                                                            
Query: 361      acagtgattacatggacccaagtgatatacttgagagttctttgattgccaaggagaaga 420
                ||||||| ||| ||||| |||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 28471370 acagtgactacgtggactcaagtgatatacttgagagttccttgaatgccaaggagaaga 28471429

                                                                            
Query: 421      ttatatcagagttgaatgcagaactgcgtaacgttgaaagtactttatcaagtgagaaag 480
                | || |||||| ||||||||||||||||||   |||||| |||||||||   ||||| ||
Sbjct: 28471430 tcatctcagagctgaatgcagaactgcgtagtattgaaaatactttatcttctgagagag 28471489

                                                                   
Query: 481      aaatgcatgtgaatgaactaaagaagttgactgctttactcagtgagaagg 531
                |||  ||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 28471490 aaacacatgttaatgaactgaaaaagttgactgctttgctcagtgagaagg 28471540



 Score =  145 bits (73), Expect = 2e-31
 Identities = 103/113 (91%)
 Strand = Plus / Plus

                                                                            
Query: 104      tagggaacggtcgttgcaagaccaactaaggcaagctacagaaagtgtcaagaatatgca 163
                |||||| ||| | ||||| ||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 28470328 tagggagcgggcattgcaggaccagctaagacaagccacagaaagtgtaaagaatatgca 28470387

                                                                     
Query: 164      gaagctacatgaatcggcacaaagccaattgtttgagcttcgtactcaatcag 216
                ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 28470388 gaagctacatgaatcagcacaaagtcaattgtttgagcttcgtactcaatcag 28470440



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 77/86 (89%)
 Strand = Plus / Plus

                                                                            
Query: 18       atggaagaaaaagttagggagatggttgaaatgaaacagcgaagcttggcagaagatagt 77
                ||||| |||||||| || ||||||||||||||||| ||| | || |||||||||||||| 
Sbjct: 28470126 atggaggaaaaagtcagagagatggttgaaatgaagcagaggagtttggcagaagatagc 28470185

                                          
Query: 78       cagaaaactcttgaagtcctgaaaga 103
                |||||||||||||||| |||||||||
Sbjct: 28470186 cagaaaactcttgaagccctgaaaga 28470211



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                            
Query: 213      tcagaggaggaccggacagcaaaggaagctgaagtgagccttctgatggatgaagttgaa 272
                ||||||||||||||| | ||||||||| ||||||| |  |||||| ||||||||||||||
Sbjct: 28470541 tcagaggaggaccgggctgcaaaggaaactgaagtcaatcttctgttggatgaagttgaa 28470600

                                                        
Query: 273      cgcgctcaatcacgattagttagccttgaaagagaaaagg 312
                || || ||| |||| |||||||| ||||| ||||||||||
Sbjct: 28470601 cgggcccaagcacgtttagttagtcttgagagagaaaagg 28470640



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 310      agggggatttacggtctcagttgcagacaacaaatgaaga 349
                |||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 28471108 agggtgatttacgatctcagttgcaaacaacaaatgaaga 28471147
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>gb|AC011361.4|AC011361 Homo sapiens chromosome 5 clone CTC-482N19, complete sequence
          Length = 189893

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 468   tcaagtgagaaagaaatgcatg 489
             ||||||||||||||||||||||
Sbjct: 48990 tcaagtgagaaagaaatgcatg 48969
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>gb|AE006836.1| Sulfolobus solfataricus P2 section 195 of 272 of the complete genome
          Length = 10974

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 453   gttgaaagtactttatcaagt 473
             |||||||||||||||||||||
Sbjct: 10171 gttgaaagtactttatcaagt 10191
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>gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, complete sequence
          Length = 216977

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 300    gaaagagaaaagggggattta 320
              |||||||||||||||||||||
Sbjct: 116053 gaaagagaaaagggggattta 116033
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>gb|AC121306.12| Mus musculus chromosome 3, clone RP24-100C12, complete sequence
          Length = 195059

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 344   tgaagacacaagcaataacag 364
             |||||||||||||||||||||
Sbjct: 54602 tgaagacacaagcaataacag 54582
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>emb|Z12825.1|MIBVMSCS B.vulgaris CMS-associated mitochondrial DNA, 2178bp
          Length = 2178

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 251 ccttctgatggatgaagttga 271
           |||||||||||||||||||||
Sbjct: 975 ccttctgatggatgaagttga 955
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>dbj|BA000024.1| Beta vulgaris subsp. vulgaris mitochondrial genomic DNA, complete
              sequence
          Length = 501020

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    ccttctgatggatgaagttga 271
              |||||||||||||||||||||
Sbjct: 293036 ccttctgatggatgaagttga 293016



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    ccttctgatggatgaagttga 271
              |||||||||||||||||||||
Sbjct: 100520 ccttctgatggatgaagttga 100500
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>gb|AC144383.2| Pan troglodytes BAC clone CH251-321N7 from X, complete sequence
          Length = 149315

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   atttacggtctcagttgcag 335
             ||||||||||||||||||||
Sbjct: 70250 atttacggtctcagttgcag 70231
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>gb|AY495613.1| Botryotinia fuckeliana polyketide synthase (PKS8) gene, complete cds
          Length = 9225

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   aaagttagggagatggttga 46
            ||||||||||||||||||||
Sbjct: 7198 aaagttagggagatggttga 7217
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>gb|AC140265.2| Mus musculus BAC clone RP23-318B18 from chromosome 6, complete sequence
          Length = 178580

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    ggaagaaaaagttagggaga 39
             ||||||||||||||||||||
Sbjct: 67671 ggaagaaaaagttagggaga 67652
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>ref|XM_860207.1| PREDICTED: Canis familiaris similar to Centrosomal protein Cep290,
            transcript variant 2 (LOC482591), mRNA
          Length = 4691

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  agttagccttgaaagagaaa 309
            ||||||||||||||||||||
Sbjct: 2449 agttagccttgaaagagaaa 2468
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>ref|XM_539708.2| PREDICTED: Canis familiaris similar to Centrosomal protein Cep290,
            transcript variant 1 (LOC482591), mRNA
          Length = 7443

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  agttagccttgaaagagaaa 309
            ||||||||||||||||||||
Sbjct: 5201 agttagccttgaaagagaaa 5220
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>gb|AC129019.4| Mus musculus BAC clone RP24-541L1 from chromosome 13, complete sequence
          Length = 190792

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   ttatatcagagttgaatgca 440
             ||||||||||||||||||||
Sbjct: 78297 ttatatcagagttgaatgca 78278
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>gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome 6, complete sequence
          Length = 192062

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 407    tgccaaggagaagattatatcaga 430
              |||||||||||||| |||||||||
Sbjct: 189103 tgccaaggagaagactatatcaga 189080
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>gb|AC121859.2| Mus musculus BAC clone RP24-104F15 from 6, complete sequence
          Length = 205084

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 407    tgccaaggagaagattatatcaga 430
              |||||||||||||| |||||||||
Sbjct: 169613 tgccaaggagaagactatatcaga 169636
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>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence
          Length = 122694

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    ctgatggatgaagttgaacg 274
              ||||||||||||||||||||
Sbjct: 111371 ctgatggatgaagttgaacg 111352
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>emb|BX321878.4| Human DNA sequence from clone XXyac-13CF11 on chromosome 1, complete
             sequence
          Length = 60721

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 478   aagaaatgcatgtgaatgaactaa 501
             ||||||||||||||| ||||||||
Sbjct: 14823 aagaaatgcatgtgactgaactaa 14800
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>emb|AL670455.3| Human DNA sequence from clone RP13-565O16 on chromosome X Contains the
             gene for a novel protein (FLJ20527), a novel pseudogene
             and the 5' end of a novel pseudogene, complete sequence
          Length = 55411

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   atttacggtctcagttgcag 335
             ||||||||||||||||||||
Sbjct: 32493 atttacggtctcagttgcag 32474
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>emb|X99000.1|CS39KBCIV S.cerevisiae 39kb DNA segment of chromosome IV
          Length = 39090

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   aagattatatcagagttgaa 436
             ||||||||||||||||||||
Sbjct: 24603 aagattatatcagagttgaa 24584
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>emb|BX251411.1| Tropheryma whipplei TW08/27, complete genome; segment 2/3
          Length = 299050

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 464    tttatcaagtgagaaagaaa 483
              ||||||||||||||||||||
Sbjct: 144267 tttatcaagtgagaaagaaa 144248
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>emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 in linkage group 8,
              complete sequence
          Length = 206751

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     aaaactcttgaagtcctgaaagat 104
              |||||||||||| |||||||||||
Sbjct: 186345 aaaactcttgaactcctgaaagat 186368
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>gb|AC104663.3| Homo sapiens BAC clone RP11-713M6 from 4, complete sequence
          Length = 137625

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    agaaagaaatgcatgtgaat 494
              ||||||||||||||||||||
Sbjct: 102120 agaaagaaatgcatgtgaat 102139
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>gb|AC092812.2| Homo sapiens chromosome 1 clone RP11-536F12, complete sequence
          Length = 160903

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 477  aaagaaatgcatgtgaatga 496
            ||||||||||||||||||||
Sbjct: 8807 aaagaaatgcatgtgaatga 8826
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>gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, complete sequence
          Length = 164550

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 477    aaagaaatgcatgtgaatga 496
              ||||||||||||||||||||
Sbjct: 136684 aaagaaatgcatgtgaatga 136703
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>emb|BX664606.17| Zebrafish DNA sequence from clone CH211-171L17 in linkage group 22,
             complete sequence
          Length = 181178

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    aaaactcttgaagtcctgaaagat 104
             |||||||||||| |||||||||||
Sbjct: 78959 aaaactcttgaactcctgaaagat 78936
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>emb|AL626778.12| Mouse DNA sequence from clone RP23-326E2 on chromosome 4, complete
             sequence
          Length = 186208

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 407   tgccaaggagaagattatatcaga 430
             |||||||||||||| |||||||||
Sbjct: 40636 tgccaaggagaagactatatcaga 40613
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    aagaatatgcagaagctaca 172
              ||||||||||||||||||||
Sbjct: 244226 aagaatatgcagaagctaca 244207
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>gb|AC008463.7| Homo sapiens chromosome 5 clone CTC-352P4, complete sequence
          Length = 76121

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  agtgagaaggaaactgtgat 541
            ||||||||||||||||||||
Sbjct: 7919 agtgagaaggaaactgtgat 7900
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>gb|AC010329.3|AC010329 Homo sapiens chromosome 19 clone CTD-2626G11, complete sequence
          Length = 187607

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 522    agtgagaaggaaactgtgat 541
              ||||||||||||||||||||
Sbjct: 153245 agtgagaaggaaactgtgat 153226
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>gb|AC154453.2| Mus musculus BAC clone RP24-173C8 from 9, complete sequence
          Length = 208235

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   aaagagaaaagggggattta 320
             ||||||||||||||||||||
Sbjct: 81620 aaagagaaaagggggattta 81601
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>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome
          Length = 927303

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    tttatcaagtgagaaagaaa 483
              ||||||||||||||||||||
Sbjct: 425043 tttatcaagtgagaaagaaa 425062
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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    ttgattgccaaggagaagat 421
              ||||||||||||||||||||
Sbjct: 644945 ttgattgccaaggagaagat 644964
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>emb|Z74254.1|SCYDL206W S.cerevisiae chromosome IV reading frame ORF YDL206w
          Length = 2897

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  aagattatatcagagttgaa 436
            ||||||||||||||||||||
Sbjct: 2086 aagattatatcagagttgaa 2067
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>dbj|AP001282.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-819M15, complete
            sequence
          Length = 165258

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 403  tgattgccaaggagaagatt 422
            ||||||||||||||||||||
Sbjct: 1333 tgattgccaaggagaagatt 1352
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>gb|DQ331359.1| Synthetic construct Saccharomyces cerevisiae clone FLH202657.01X
            YDL206W gene, complete sequence
          Length = 2289

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  aagattatatcagagttgaa 436
            ||||||||||||||||||||
Sbjct: 1775 aagattatatcagagttgaa 1756
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>dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP13-259F12, complete
              sequence
          Length = 167444

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    tgattgccaaggagaagatt 422
              ||||||||||||||||||||
Sbjct: 145792 tgattgccaaggagaagatt 145811
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>emb|AL591381.17| Human DNA sequence from clone RP11-690C2 on chromosome Xq26.1-26.3,
             complete sequence
          Length = 114815

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   atttacggtctcagttgcag 335
             ||||||||||||||||||||
Sbjct: 40368 atttacggtctcagttgcag 40387
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>emb|AL732600.4| Human DNA sequence from clone RP11-184E11 on chromosome 1, complete
             sequence
          Length = 25994

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 478   aagaaatgcatgtgaatgaactaa 501
             ||||||||||||||| ||||||||
Sbjct: 14827 aagaaatgcatgtgactgaactaa 14804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,396,356
Number of Sequences: 3902068
Number of extensions: 5396356
Number of successful extensions: 105971
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105767
Number of HSP's gapped (non-prelim): 204
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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