>TMED7_HUMAN (Q9Y3B3) Transmembrane emp24 domain-containing protein 7 precursor|
          Length = 224

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
 Frame = +3

Query: 183 WTRACVLVLCIMPFLHPAAAIRFVI--DREECFSHNVEYEGDTVHVSFVVIKADTPWHYS 356
           W    + +L ++P    A+ I F +  + ++CF  ++  +G    + F VI   T  HY 
Sbjct: 17  WGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIA-QGTKCTLEFQVI---TGGHYD 72

Query: 357 EDGVDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVG 530
              VD  ++D +G  +     K  D F F   K G ++FCF+N+  +  H+T+ FD  VG
Sbjct: 73  ---VDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVG 129

>TMED3_MOUSE (Q78IS1) Transmembrane emp24 domain-containing protein 3 precursor|
          Length = 221

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +3

Query: 264 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 443
           ++CF   VE +G    + + VI   T  HY    VD  V+D  G  +     K  D F +
Sbjct: 42  KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPRGNVIYRETKKQYDSFTY 94

Query: 444 IVQKRGVHRFCFTNK--SPYHETIDFDVHVG 530
             + +GV+RFCF+N+  +  H+T+ FD  VG
Sbjct: 95  KTEAKGVYRFCFSNEFSTFSHKTVYFDFQVG 125

>TMED3_RAT (Q6AY25) Transmembrane emp24 domain-containing protein 3 precursor|
          Length = 221

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +3

Query: 264 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 443
           ++CF   VE +G    + + VI   T  HY    VD  V+D  G  +     K  D F +
Sbjct: 42  KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPMGNIIYRETKKQYDSFTY 94

Query: 444 IVQKRGVHRFCFTNK--SPYHETIDFDVHVG 530
             + +GV+RFCF+N+  +  H+T+ FD  VG
Sbjct: 95  KTEVKGVYRFCFSNEFSTFSHKTVYFDFQVG 125

>TMED3_HUMAN (Q9Y3Q3) Transmembrane emp24 domain-containing protein 3 precursor|
           (Membrane protein p24B)
          Length = 217

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
 Frame = +3

Query: 264 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 443
           ++CF   VE +G    + + VI   T  HY    VD  V+D  G  +     K  D F +
Sbjct: 38  KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPQGNTIYRETKKQYDSFTY 90

Query: 444 IVQKRGVHRFCFTNK--SPYHETIDFDVHVG 530
             + +GV++FCF+N+  +  H+T+ FD  VG
Sbjct: 91  RAEVKGVYQFCFSNEFSTFSHKTVYFDFQVG 121

>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor|
          Length = 203

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
 Frame = +3

Query: 168 MEGLSWTRACVLVLCIMPFLHPAAAIRFVID--REECFSHNVEYEGDTVHVSFVVIKADT 341
           M  L+W  A +       F+ PAA+    +D   E+CF   +   G  + + F V     
Sbjct: 1   MNSLTWILAVL-------FVTPAASYFIHVDANEEQCFFDRLT-SGTKMGLMFEV----- 47

Query: 342 PWHYSEDG---VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK 488
               +E G   +D+ +   +  ++     ++S KF F     GV+ +CF NK
Sbjct: 48  ----AEGGFLDIDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNK 95

>SYFB_NITEU (Q82VV6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 788

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 168 MEGLSWTRACVLVLCIMPFLHPAAAIRFVIDRE 266
           +E L W R+    L + P LHP  + R +ID++
Sbjct: 618 IESLFWPRSVYFELALHPALHPGKSARILIDKK 650

>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor|
           (COPI-coated vesicle membrane protein p24) (Fragment)
          Length = 196

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +3

Query: 204 VLCIMPFLHPAAAIRFV-IDR--EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDL 374
           VL ++  L   A+  FV ID   EECF   V   G  + + F V +      + +  V++
Sbjct: 2   VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEI 56

Query: 375 VVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK 488
              D+ G    D   ++S K+ F     G ++FCF+N+
Sbjct: 57  TGPDNKGIYKGDR--ESSGKYTFAAHMDGTYKFCFSNR 92

>GLPB_HALSA (Q9HNS3) Probable anaerobic glycerol-3-phosphate dehydrogenase|
           subunit B (EC 1.1.99.5) (Anaerobic G-3-P dehydrogenase
           subunit B) (Anaerobic G3Pdhase B)
          Length = 427

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
 Frame = +3

Query: 285 VEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRG- 461
           +E  G  +     V+ ADT    +  GV+ V  + NGA++ +S D      E+++   G 
Sbjct: 272 LEAAGVRIETGNPVVDADT----TAGGVETVYVEKNGARIPNSAD------EYVLATGGL 321

Query: 462 VHRFCFTNKSPYHETIDFDVHVGH----YSYFDQHA 557
           V +   +++   +E I FD  + H    Y++FD  A
Sbjct: 322 VGKGIDSDRDAVYEPI-FDCRIAHSDDRYAWFDDDA 356

>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A) (RNP21.4)
          Length = 201

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +3

Query: 264 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 443
           EECF   V   G  + + F V +      + +  V++   D+ G    D   ++S K+ F
Sbjct: 30  EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82

Query: 444 IVQKRGVHRFCFTNK 488
                G ++FCF+N+
Sbjct: 83  AAHMDGTYKFCFSNR 97

>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A) (Sid 394)
          Length = 201

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +3

Query: 264 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 443
           EECF   V   G  + + F V +      + +  V++   D+ G    D   ++S K+ F
Sbjct: 30  EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82

Query: 444 IVQKRGVHRFCFTNK 488
                G ++FCF+N+
Sbjct: 83  AAHMDGTYKFCFSNR 97

>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor|
           (Membrane protein p24A)
          Length = 201

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +3

Query: 264 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 443
           EECF   V   G  + + F V +      + +  V++   D+ G    D   ++S K+ F
Sbjct: 30  EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82

Query: 444 IVQKRGVHRFCFTNK 488
                G ++FCF+N+
Sbjct: 83  AAHMDGTYKFCFSNR 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,968,541
Number of Sequences: 219361
Number of extensions: 1717626
Number of successful extensions: 4431
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4431
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)