>TMEM1_HUMAN (P48553) Transmembrane protein 1 (Epilepsy holoprosencephaly|
           candidate 1 protein) (EHOC-1) (GT334 protein)
          Length = 1259

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 29/101 (28%), Positives = 41/101 (40%)
 Frame = +2

Query: 239 SLSSPEEFENRYMELTKGAADNYHRSWWKRHGVVLDGEIAAIYFKHGNYDLAAKSYEKVC 418
           +LSS E FE  Y++L+    + Y      R    +  ++A  Y +      A    +   
Sbjct: 447 ALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKFVGKDLAEFYMRKKAPQKAEIYLQGAL 506

Query: 419 ALYSAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLS 541
             Y AEGW   +      LAECQK L     YL +   L S
Sbjct: 507 KNYLAEGWALPITHTRKQLAECQKHLGQIENYLQTSSLLAS 547

>Y623_DROME (Q9VFB7) Hypothetical protein CG6623|
          Length = 1145

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 22/96 (22%), Positives = 38/96 (39%)
 Frame = +2

Query: 239 SLSSPEEFENRYMELTKGAADNYHRSWWKRHGVVLDGEIAAIYFKHGNYDLAAKSYEKVC 418
           +L S + F+  Y+EL + A   Y      R   ++  ++   Y        A   +  + 
Sbjct: 449 ALGSNQAFQKLYLELAELAISTYKHVTRLRSARLVGLDLGNFYCALNEPHKAVGFFTDLL 508

Query: 419 ALYSAEGWEELLADVLPDLAECQKILNDEAGYLASC 526
               AE W  L +  L +LA C + + D   Y  +C
Sbjct: 509 RELKAENWHMLSSQTLLELANCYRKMGDSLAYTKTC 544

>SYG_BIFLO (Q8G7W9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 490

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
 Frame = +2

Query: 98  NLMTRTMSGPATSETSLPVDRPMRLSEIHVAAEHALKQTISDPDFMTS------------ 241
           N+M RT  GP   E SL   RP     I V  ++ +  + S P F  +            
Sbjct: 141 NMMLRTHLGPVEDENSLHYLRPETAQGIFVDFKNVMTSSRSRPPFGIANMGKSFRNEITP 200

Query: 242 ---LSSPEEFENRYME--LTKGAADNYHRSW 319
              +    EFE   ME  +T G  + +H+ W
Sbjct: 201 GNFIFRTREFEQMEMEFFVTPGTDEEWHQYW 231

>MYO15_MOUSE (Q9QZZ4) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3511

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 448  LFPAFCRIESTHFFIGFCSQIIIPMLKIYSCNLSIKHNSMSF 323
            L  AF    S+ FFI  CS +++P      C L++ HN ++F
Sbjct: 3388 LLSAFPLFGSSFFFIQSCSNVLVPA----PCILAVNHNGLNF 3425

>SWS_DROME (Q9U969) Protein Swiss cheese|
          Length = 1425

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 89  SSSNLMTRTMSGPATSETSLPVDRPMRLSEIHVAAEHALKQTISDPD 229
           S  NLM   +SG  +S  S+ V RP      H   EH L     +PD
Sbjct: 357 SQMNLMQSAVSGTGSSGVSVTVTRPPSSPSRHSREEHTLSDPNPNPD 403

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
            (Protein BIPOSTO) (Auxin-responsive protein
            IAA21/IAA23/IAA25)
          Length = 1164

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = +2

Query: 11   VGNLAELYDSVDGSGFGPHSKVSPNK-----SSSNLMTRTMSGPATSETSLPVDRPMRL- 172
            VG   + Y  +   G  P S  SP+      SSS  + R+ SGPA       +D    L 
Sbjct: 824  VGGGVKAYSGITDGGDAPSSSTSPSTNNCQISSSGFLNRSQSGPAILIPDAAIDMSGNLV 883

Query: 173  SEIHVAAEHALKQTI 217
             +++  ++  LKQ +
Sbjct: 884  QDLYSKSDMRLKQEL 898

>BIOH_NITEU (Q82SL8) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 252

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 272 YMELTKGAADNYHRSWWKRHGVVLDGEIAAIY--FKHGNYDLAAKSYEKVCALYSAEGWE 445
           ++E T    D      W  H  V DG + ++   F+    DL      + CAL S +   
Sbjct: 5   HIETTGNGPDLVMLHGWAMHSGVWDGVVESLSQRFRLHQVDLPGHGASRDCALDSLDQMT 64

Query: 446 ELLADVLP 469
           E++AD LP
Sbjct: 65  EVIADRLP 72

>Y2476_VIBCH (Q9KP97) UPF0149 protein VC2476|
          Length = 191

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
 Frame = +2

Query: 200 ALKQTISDPDFMTSLSSPE-EFENRYMELTKGAADNYHRSWWKRHGVVLDGEIAAIYFKH 376
           A+   + D DF  SL  PE E E    EL    A+      W  H +   G ++    KH
Sbjct: 75  AMSAQLVDTDFELSLLLPEGEGEEALFELADAVAE------WINHFISGLG-LSGANLKH 127

Query: 377 GNYDLAAKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLSIE 547
                   S E   AL   E   +L  D   DLAE  ++L     ++ +CV +L  E
Sbjct: 128 A-------SVEAKEALEDLEEMSKLGIDEEDDLAEQAELLEQVIEHIKACVLVLHAE 177

>FA5_HUMAN (P12259) Coagulation factor V precursor (Activated protein C|
            cofactor) [Contains: Coagulation factor V heavy chain;
            Coagulation factor V light chain]
          Length = 2224

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 65   HSKVSPNKSSSNLMTRTMSGPATSETSLPVDRPMRLSEIHVAAEHALKQTISDPDFMTSL 244
            HS   P+  SS+     M     S  S P D    +S++  ++EH + QT+  PD     
Sbjct: 1139 HSTSDPSHRSSSPELSEMLEYDRSHKSFPTD----ISQMSPSSEHEVWQTVISPDLSQVT 1194

Query: 245  SSPE 256
             SPE
Sbjct: 1195 LSPE 1198

>T2E8_ECOLI (P50195) Type II restriction enzyme Eco47II (EC 3.1.21.4)|
           (Endonuclease Eco47II) (R.Eco47II)
          Length = 239

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +2

Query: 50  SGFGPHSKVSPNKSSSNLMTRTMSGPATSETSLPVDRPMRLSEIHVAAEHALKQTISDPD 229
           S F P +K S     SN   R + G +  E  L   RP  L E+H A  HA++  +S+  
Sbjct: 160 SPFTPSNKGSGTLCPSNPNIRIIDGASFYE--LVTGRPDALQELHSALPHAIEYILSERL 217

Query: 230 FMTSLSSPEE 259
                S P++
Sbjct: 218 GQQGFSIPDK 227

>OGT1_HUMAN (O15294) UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase 110 kDa subunit (EC
           2.4.1.-) (O-GlcNAc transferase p110 subunit)
          Length = 1046

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/83 (22%), Positives = 33/83 (39%)
 Frame = +2

Query: 176 EIHVAAEHALKQTISDPDFMTSLSSPEEFENRYMELTKGAADNYHRSWWKRHGVVLDGEI 355
           EI +A  H  K    DP+F+ +  +            +  A          +  V+ G +
Sbjct: 206 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 265

Query: 356 AAIYFKHGNYDLAAKSYEKVCAL 424
           A +Y++ G  DLA  +Y +   L
Sbjct: 266 ACVYYEQGLIDLAIDTYRRAIEL 288

>2NPD_WILMR (Q12723) 2-nitropropane dioxygenase (EC 1.13.11.32) (Nitroalkane|
           oxidase) (2-NPD)
          Length = 374

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
 Frame = +2

Query: 65  HSKVSPNKSSSNLMTRTMSGPATSETSLPVDRPMRLSEIHVAAEHALKQTISDPDFMTSL 244
           H K+  +  S  +MT  +SG      S P  R +          H      S PD+    
Sbjct: 276 HLKMFQSPKSDTMMTAAISGRNLRTISTPFLRDL----------HQSSPLASIPDYPLPY 325

Query: 245 SSPEEFENRYMELTKG-------AADNYHRSW 319
            S +   N   +  KG       A  NYH+SW
Sbjct: 326 DSFKSLANDAKQSGKGPQYSAFLAGSNYHKSW 357

>PPID_BOVIN (P26882) 40 kDa peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-40) (CYP-40)
           (Cyclophilin-related protein) (Estrogen receptor-binding
           cyclophilin)
          Length = 369

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
 Frame = +2

Query: 353 IAAIYFKHGNYDLAAKSYEKV--------CALYSAEG--WEELLADVLPDLAECQKILND 502
           I   +FK  N+++A K Y KV         A   A+G   + +    + ++  C+  ++D
Sbjct: 228 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 287

Query: 503 EAGYLASCVKLLSIESS 553
             G + SC++ L I+ S
Sbjct: 288 WQGAVDSCLEALEIDPS 304

>OGT1_RAT (P56558) UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase 110 kDa subunit (EC
           2.4.1.-) (O-GlcNAc transferase p110 subunit)
          Length = 1036

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/83 (22%), Positives = 33/83 (39%)
 Frame = +2

Query: 176 EIHVAAEHALKQTISDPDFMTSLSSPEEFENRYMELTKGAADNYHRSWWKRHGVVLDGEI 355
           EI +A  H  K    DP+F+ +  +            +  A          +  V+ G +
Sbjct: 196 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 255

Query: 356 AAIYFKHGNYDLAAKSYEKVCAL 424
           A +Y++ G  DLA  +Y +   L
Sbjct: 256 ACVYYEQGLIDLAIDTYRRAIEL 278

>IPYR_CAEEL (Q18680) Probable inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 407

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +2

Query: 47  GSGFGPHSKVSPNKSSSNLMTRTMSGP------ATSETSLPVDRPMRLSEIHVAAEHALK 208
           G      S ++   SSSN  T + S        ATS TS PV    ++S IH  +  +  
Sbjct: 2   GCAVSQESAIATVSSSSNTATTSTSSSNTSQKWATSRTSRPVTNVTQVSAIHTTSMDSGS 61

Query: 209 QTISDPDFMTSLSS 250
            T+  P    SL++
Sbjct: 62  STVQLPSPRGSLTT 75

>DDLB_PSEAE (Q9LCT6) D-alanine--D-alanine ligase B (EC 6.3.2.4)|
           (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B)
          Length = 319

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +2

Query: 92  SSNLMTRTMSGPATSETSL--PVDRPMRLSEIHVAAEHALKQTISDPDFMTSLSSPEEFE 265
           S  L+ + +SGP  +  +L   V   +RL   H   ++  K   SD  +       E  E
Sbjct: 184 SQVLVEQWISGPEFTVATLRGQVLPAIRLGTPHTFYDYDAKYLASDTRYQVPCGLDEAKE 243

Query: 266 NRYMELTKGAADNYHRSWWKRHGVVLDGE 352
               ELT  A D      W R  V+ D E
Sbjct: 244 RELKELTARACDALGIQGWGRADVMQDAE 272

>OGT1_CAEEL (O18158) UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase (EC 2.4.1.-) (O-GlcNAc)
           (OGT)
          Length = 1151

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = +2

Query: 176 EIHVAAEHALKQTISDPDFMTSLSSPEEFENRYMELTKGAADNYHRSWWKRHGVVLDGEI 355
           EI +A  H  K    DP+F+ +  +            +  +          +  V+ G +
Sbjct: 310 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVSAYLRALNLSGNHAVVHGNL 369

Query: 356 AAIYFKHGNYDLAAKSYEKVCAL 424
           A +Y++ G  DLA  +Y+K   L
Sbjct: 370 ACVYYEQGLIDLAIDTYKKAIDL 392

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 448  LFPAFCRIESTHFFIGFCSQIIIPMLKIYSCNLSIKHNSMSF 323
            L  A     S+ FFI  CS I +P      C L+I HN ++F
Sbjct: 3407 LLSALPMFGSSFFFIQSCSNIAVPA----PCILAINHNGLNF 3444

>SYFB_HUMAN (Q9NSD9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 589

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 350 EIAAIYFKHGNYDLAAKSYEKVCALY 427
           EI+ I  K  N D+ AK+Y  +CA+Y
Sbjct: 476 EISDIVIKDSNTDVGAKNYRHLCAVY 501


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,658,520
Number of Sequences: 219361
Number of extensions: 1638511
Number of successful extensions: 5155
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5154
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)