ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags33p22 |
|---|---|
| Clone Library Name | barley_pub |
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 140 bits (352), Expect = 3e-33 Identities = 68/174 (39%), Positives = 109/174 (62%), Gaps = 5/174 (2%) Frame = +1 Query: 22 RPSLPQPPA*GSGEMKQQDGAS-----AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVI 186 +PS PP + K++ + + KMFIGGL+ T+ +EYFGKYG + D I Sbjct: 131 QPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI 190 Query: 187 MKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIF 366 MK+ T + RGFGF+++ P+ VD V++ H++DGK ++ KR IP+ + KT KIF Sbjct: 191 MKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD----EQDKTGKIF 246 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 VGG+ +R EF++FFS++G +++ +++ D T +SRGFGF+ +D+ VD + Sbjct: 247 VGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 300 Score = 64.7 bits (156), Expect = 2e-10 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GG+ F+E+F ++G I+DA +M ++ T + RGFGF+TY VDRV ++ Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303 Query: 274 NHV-IDGKQVEIKRTIPK 324 + +++EIKR P+ Sbjct: 304 KFIDFKDRKIEIKRAEPR 321
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 138 bits (347), Expect = 1e-32 Identities = 70/164 (42%), Positives = 106/164 (64%), Gaps = 1/164 (0%) Frame = +1 Query: 40 PPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRG 219 P GS Q D KMFIGGLS QTS + ++YF K+GEI + ++M++ T++ RG Sbjct: 7 PGTSGSANDSQHD---PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63 Query: 220 FGFITYSDPAIVDRVI-EDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRD 396 FGF+T++DPA VD+V+ + +H +D K ++ K P+ A P +TKKIFVGGL Sbjct: 64 FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 ++ K +F +FGKV + ++ D +TNR RGFGF+ F+ E V+++ Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 167 Score = 69.7 bits (169), Expect = 5e-12 Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T + K+YF ++G++ DA++M ++ T + RGFGF+T+ + +V++V E Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170 Query: 274 N-HVIDGKQVEIKRTIPK 324 + H I+ K VE K+ PK Sbjct: 171 HFHEINNKMVECKKAQPK 188
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 137 bits (346), Expect = 1e-32 Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Frame = +1 Query: 52 GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFI 231 GS Q D KMFIGGLS QTS + ++YF K+GEI + ++M++ T++ RGFGF+ Sbjct: 11 GSANDSQHD---PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67 Query: 232 TYSDPAIVDRVI-EDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFK 408 T++DPA VD+V+ + +H +D K ++ K P+ A P +TKKIFVGGL ++ K Sbjct: 68 TFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVK 127 Query: 409 DFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 +F +FGKV + ++ D +TNR RGFGF+ F+ E V+++ Sbjct: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKV 167 Score = 69.7 bits (169), Expect = 5e-12 Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T + K+YF ++G++ DA++M ++ T + RGFGF+T+ + +V++V E Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170 Query: 274 N-HVIDGKQVEIKRTIPK 324 + H I+ K VE K+ PK Sbjct: 171 HFHEINNKMVECKKAQPK 188
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 132 bits (333), Expect = 5e-31 Identities = 63/146 (43%), Positives = 99/146 (67%), Gaps = 1/146 (0%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVI-E 270 KMFIGGLS QT+ +EYFG++GE+ + ++M++ T++ RGFGF+T+ D A VD+V+ + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 H +D K ++ K P+ A P +TKKIFVGGL ++ K +F +FGKV + + Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140 Query: 451 ICDHSTNRSRGFGFIVFDAEKTVDEL 528 + D +TNR RGFGF+ F++E V+++ Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKV 166 Score = 69.7 bits (169), Expect = 5e-12 Identities = 33/78 (42%), Positives = 54/78 (69%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T++ K+YF ++G++ DA++M ++ T + RGFGF+T+ IV++V E Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 274 N-HVIDGKQVEIKRTIPK 324 + H I+ K VE K+ PK Sbjct: 170 HFHEINNKMVECKKAQPK 187 Score = 49.3 bits (116), Expect = 7e-06 Identities = 25/70 (35%), Positives = 40/70 (57%) Frame = +1 Query: 319 PKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIV 498 P A+P K+F+GGL + +++F +FG+V E ++ D T RSRGFGF+ Sbjct: 8 PGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67 Query: 499 FDAEKTVDEL 528 F + VD++ Sbjct: 68 FMDQAGVDKV 77
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 132 bits (332), Expect = 6e-31 Identities = 63/146 (43%), Positives = 99/146 (67%), Gaps = 1/146 (0%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVI-E 270 KMFIGGLS QT+ +EYFG++GE+ + ++M++ T++ RGFGF+T+ D A VD+V+ + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 H +D K ++ K P+ A P +TKKIFVGGL ++ K +F +FGKV + + Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAML 140 Query: 451 ICDHSTNRSRGFGFIVFDAEKTVDEL 528 + D +TNR RGFGF+ F++E V+++ Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKV 166 Score = 68.9 bits (167), Expect = 8e-12 Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T++ K YF ++G++ DA++M ++ T + RGFGF+T+ IV++V E Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 274 N-HVIDGKQVEIKRTIPK 324 + H I+ K VE K+ PK Sbjct: 170 HFHEINNKMVECKKAQPK 187 Score = 49.3 bits (116), Expect = 7e-06 Identities = 25/70 (35%), Positives = 40/70 (57%) Frame = +1 Query: 319 PKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIV 498 P A+P K+F+GGL + +++F +FG+V E ++ D T RSRGFGF+ Sbjct: 8 PGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67 Query: 499 FDAEKTVDEL 528 F + VD++ Sbjct: 68 FMDQAGVDKV 77
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 132 bits (332), Expect = 6e-31 Identities = 63/146 (43%), Positives = 99/146 (67%), Gaps = 1/146 (0%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVI-E 270 KMFIGGLS QT+ +EYFG++GE+ + ++M++ T++ RGFGF+T+ D A VD+V+ + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 H +D K ++ K P+ A P +TKKIFVGGL ++ K +F +FGKV + + Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAML 140 Query: 451 ICDHSTNRSRGFGFIVFDAEKTVDEL 528 + D +TNR RGFGF+ F++E V+++ Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKV 166 Score = 68.9 bits (167), Expect = 8e-12 Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T++ K YF ++G++ DA++M ++ T + RGFGF+T+ IV++V E Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169 Query: 274 N-HVIDGKQVEIKRTIPK 324 + H I+ K VE K+ PK Sbjct: 170 HFHEINNKMVECKKAQPK 187 Score = 49.3 bits (116), Expect = 7e-06 Identities = 25/70 (35%), Positives = 40/70 (57%) Frame = +1 Query: 319 PKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIV 498 P A+P K+F+GGL + +++F +FG+V E ++ D T RSRGFGF+ Sbjct: 8 PGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67 Query: 499 FDAEKTVDEL 528 F + VD++ Sbjct: 68 FMDQAGVDKV 77
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 129 bits (324), Expect = 5e-30 Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 16/170 (9%) Frame = +1 Query: 64 MKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 M Q G K+F+GGL T+ T + YF +YGE+VD VIMK++ T + RGFGF+ + D Sbjct: 1 MNNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60 Query: 244 PAIVDRVIEDN-HVIDGKQVEIKRTIPKGAAP---------------LKDFKTKKIFVGG 375 P V V+ H +DG+ ++ K P+G P ++ ++ KIFVGG Sbjct: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGG 120 Query: 376 LPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +P + E K++F++FG V E +I D R RGFGFI F+ E++VD+ Sbjct: 121 IPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170 Score = 70.9 bits (172), Expect = 2e-12 Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 1/105 (0%) Frame = +1 Query: 13 RPLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMK 192 R ++P +P + + + + + K+F+GG+ KEYF ++G + + V++ Sbjct: 88 RGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIY 147 Query: 193 ERHTQKPRGFGFITYSDPAIVDRVIEDN-HVIDGKQVEIKRTIPK 324 + Q+PRGFGFIT+ D VD+ + + H I GK+VE+KR P+ Sbjct: 148 DAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 192
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 125 bits (315), Expect = 6e-29 Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 15/169 (8%) Frame = +1 Query: 64 MKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 M K+F+GGL T+ T + YF +YGE+VD VIMK++ T + RGFGF+ + D Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60 Query: 244 PAIVDRVIEDN-HVIDGKQVEIKRTIPKGAAPLK--------------DFKTKKIFVGGL 378 P V V+ H +DG+ ++ K P+G P + + K+ KIFVGG+ Sbjct: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120 Query: 379 PTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 P + E +++F KFG V E +I D R RGFGFI F+ E++VD+ Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169 Score = 72.0 bits (175), Expect = 9e-13 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 5/109 (4%) Frame = +1 Query: 13 RPLRPSLPQP----PA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDA 180 +P P QP P G + + D + + K+F+GG+ +EYF K+G + + Sbjct: 83 KPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEV 142 Query: 181 VIMKERHTQKPRGFGFITYSDPAIVDRVIEDN-HVIDGKQVEIKRTIPK 324 V++ + Q+PRGFGFIT+ D VD+ + + H I GK+VE+KR P+ Sbjct: 143 VMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 125 bits (313), Expect = 9e-29 Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 15/159 (9%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGL T+ T + YF +YGE+VD VIMK++ T + RGFGF+ + DP V V+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 274 N-HVIDGKQVEIKRTIPKGAAPLK--------------DFKTKKIFVGGLPTALRDDEFK 408 H +DG+ ++ K P+G P + K+ KIFVGG+P + E + Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELR 130 Query: 409 DFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 ++F KFG V E +I D R RGFGFI F+ E++VD+ Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169 Score = 72.0 bits (175), Expect = 9e-13 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 5/109 (4%) Frame = +1 Query: 13 RPLRPSLPQP----PA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDA 180 +P P QP P G + + D + + K+F+GG+ +EYF K+G + + Sbjct: 83 KPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEV 142 Query: 181 VIMKERHTQKPRGFGFITYSDPAIVDRVIEDN-HVIDGKQVEIKRTIPK 324 V++ + Q+PRGFGFIT+ D VD+ + + H I GK+VE+KR P+ Sbjct: 143 VMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 120 bits (302), Expect = 2e-27 Identities = 54/146 (36%), Positives = 94/146 (64%), Gaps = 1/146 (0%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS +T+ YF ++G+I+D V+MK + + RGFGF+T++DP V+ V+++ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 274 N-HVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 H +DG+ ++ K P+ K K+F+GGLP+ + + + + FF+++GKV E I Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127 Query: 451 ICDHSTNRSRGFGFIVFDAEKTVDEL 528 + D +SRGFGF+ F+ E +V+ + Sbjct: 128 MYDQEKKKSRGFGFLSFEEESSVEHV 153 Score = 67.0 bits (162), Expect = 3e-11 Identities = 33/105 (31%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Frame = +1 Query: 13 RPLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMK 192 +P P Q P G G K+F+GGL + + +F +YG++ + VIM Sbjct: 80 KPCNPRTLQKPKKGGGY----------KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMY 129 Query: 193 ERHTQKPRGFGFITYSDPAIVDRVIEDNHV-IDGKQVEIKRTIPK 324 ++ +K RGFGF+++ + + V+ V + ++ ++GKQVEIK+ P+ Sbjct: 130 DQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPR 174
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 120 bits (300), Expect = 3e-27 Identities = 59/147 (40%), Positives = 95/147 (64%), Gaps = 3/147 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGL+ T+ K ++G++G++VD V+M++ T++ RGFGFITY+ +VDR E+ Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 274 N-HVIDGKQVEIKRTIPKGAAPLKD--FKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H+IDGK VE KR +P+ ++ KK+FVGGL ++ +++F +FG VV Sbjct: 93 RPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSV 152 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDE 525 +++ D +T + RGF F+ FD VD+ Sbjct: 153 KLLTDKTTGKRRGFAFVEFDDYDAVDK 179 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 1/98 (1%) Frame = +1 Query: 28 SLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQ 207 +LP+P ++ S K+F+GGL +EYF ++G +V ++ ++ T Sbjct: 107 ALPRPE-----RESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTG 161 Query: 208 KPRGFGFITYSDPAIVDR-VIEDNHVIDGKQVEIKRTI 318 K RGF F+ + D VD+ +++ H I V++K++I Sbjct: 162 KRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKSI 199 Score = 51.2 bits (121), Expect = 2e-06 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 +K+F+GGL ++ K F+ ++GKVV+ ++ D +T RSRGFGFI + VD Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVD 87
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 119 bits (298), Expect = 5e-27 Identities = 60/148 (40%), Positives = 92/148 (62%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGL +T+ + K++F ++GEIVD V+MK+ T++ RGFGFITYS +VD Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 274 N-HVIDGKQVEIKRTIPKG--AAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR +P+ P KK+FVGG+ + +++ +D+F ++G VV Sbjct: 78 RPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSA 137 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 I+ D T + RGF F+ FD VD++ Sbjct: 138 AIVVDKETRKKRGFAFVEFDDYDPVDKI 165 Score = 79.0 bits (193), Expect = 8e-15 Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 1/91 (1%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 + + GA+ K+F+GG+ + ++YF +YG +V A I+ ++ T+K RGF F+ + D Sbjct: 100 RPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDY 159 Query: 247 AIVDRV-IEDNHVIDGKQVEIKRTIPKGAAP 336 VD++ + NH I GK +++K+ +PKG AP Sbjct: 160 DPVDKICLSRNHQIRGKHIDVKKALPKGDAP 190 Score = 51.6 bits (122), Expect = 1e-06 Identities = 22/57 (38%), Positives = 35/57 (61%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +K+F+GGL D+ K F ++G++V+ ++ D T RSRGFGFI + VD+ Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDD 73
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 118 bits (295), Expect = 1e-26 Identities = 58/166 (34%), Positives = 101/166 (60%), Gaps = 11/166 (6%) Frame = +1 Query: 61 EMKQQDGASAA--------KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPR 216 E+K ++G+ A K+F+GGL+ T+ +E++ ++GEI D ++M++ T++ R Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSR 64 Query: 217 GFGFITYSDPAIVDRVIEDN-HVIDGKQVEIKRTIPKGAAPLKD--FKTKKIFVGGLPTA 387 GFGF+T+S VD ++ H+IDGK V+ KR +P+ + TK+++V G+ Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVRED 124 Query: 388 LRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +D ++F+K+G V + EII D +T + RGFGF+ FD +VD+ Sbjct: 125 HTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQ 170 Score = 65.1 bits (157), Expect = 1e-10 Identities = 32/75 (42%), Positives = 47/75 (62%) Frame = +1 Query: 298 VEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRS 477 VEIK G A L+ +KIFVGGL + DD ++F+S+FG++ + ++ D +T RS Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63 Query: 478 RGFGFIVFDAEKTVD 522 RGFGF+ F + VD Sbjct: 64 RGFGFVTFSGKTEVD 78 Score = 64.7 bits (156), Expect = 2e-10 Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 + + S ++++ G+ + EYF KYG + + I+ ++ TQKPRGFGF+T+ D Sbjct: 106 RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDH 165 Query: 247 AIVDR-VIEDNHVIDGKQVEIKRTIPK 324 VD+ V++ +H+++G + ++++ + K Sbjct: 166 DSVDQCVLQKSHMVNGHRCDVRKGLSK 192
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 116 bits (290), Expect = 4e-26 Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGL +T+ K +F K+G IVD V+MK+ T++ RGFGFITYS +++D + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 274 N-HVIDGKQVEIKRTIPKG--AAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H IDG+ VE KR +P+ +P KK+FVG L + +D+F FG +V+ Sbjct: 92 RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDI 151 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 I+ D T + RGF F+ FD VD++ Sbjct: 152 NIVIDKETGKKRGFAFVEFDDYDPVDKV 179 Score = 65.9 bits (159), Expect = 7e-11 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 1/83 (1%) Frame = +1 Query: 79 GASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD 258 GA+ K+F+G L + ++YF +G IVD I+ ++ T K RGF F+ + D VD Sbjct: 118 GATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVD 177 Query: 259 RVI-EDNHVIDGKQVEIKRTIPK 324 +V+ + H ++GK V++K+ +PK Sbjct: 178 KVVLQKQHQLNGKMVDVKKALPK 200 Score = 52.8 bits (125), Expect = 6e-07 Identities = 23/57 (40%), Positives = 34/57 (59%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +K+F+GGL D+ K F K+G +V+ ++ D T RSRGFGFI + +DE Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDE 87
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 115 bits (288), Expect = 7e-26 Identities = 57/159 (35%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Frame = +1 Query: 61 EMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 E K+++ K+FIGGLS +T+ + + Y+ ++G++ D V+M++ +++ RGFGF+T+S Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70 Query: 241 DPAIVDRVIEDN-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKD 411 A VD + H IDG+ VE KR + + P KK+FVGG+ + +D Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 130 Query: 412 FFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 +F ++GK+ EII D + + RGFGF+ FD VD++ Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T ++YF +YG+I I+ +R + K RGFGF+T+ D VD+ V++ Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+G E+++ + + Sbjct: 173 KYHTINGHNAEVRKALSR 190 Score = 48.9 bits (115), Expect = 9e-06 Identities = 20/70 (28%), Positives = 42/70 (60%) Frame = +1 Query: 313 TIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGF 492 T+P + + +K+F+GGL ++ ++++ ++GK+ + ++ D ++ RSRGFGF Sbjct: 7 TVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 66 Query: 493 IVFDAEKTVD 522 + F + VD Sbjct: 67 VTFSSMAEVD 76
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 115 bits (288), Expect = 7e-26 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 9/177 (5%) Frame = +1 Query: 25 PSLPQPPA*GSGEMKQQDG------ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVI 186 P PQP + + ++G K+FIGGLS +T+ + +E+F K+G + D V+ Sbjct: 7 PGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66 Query: 187 MKERHTQKPRGFGFITYSDPAIVDRVI-EDNHVIDGKQVEIKRTIPK--GAAPLKDFKTK 357 M++ T++ RGFGF+TYS VD + H +DG+ VE KR + + P K Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 KIFVGG+ + +D+F K+GK+ E++ D + + RGF F+ FD TVD++ Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Score = 65.9 bits (159), Expect = 7e-11 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T ++YF KYG+I +M++R + K RGF F+T+ D VD+ V++ Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+G E+K+ + K Sbjct: 187 KYHTINGHNCEVKKALSK 204
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 115 bits (288), Expect = 7e-26 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 9/177 (5%) Frame = +1 Query: 25 PSLPQPPA*GSGEMKQQDG------ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVI 186 P PQP + + ++G K+FIGGLS +T+ + +E+F K+G + D V+ Sbjct: 7 PGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66 Query: 187 MKERHTQKPRGFGFITYSDPAIVDRVI-EDNHVIDGKQVEIKRTIPK--GAAPLKDFKTK 357 M++ T++ RGFGF+TYS VD + H +DG+ VE KR + + P K Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 KIFVGG+ + +D+F K+GK+ E++ D + + RGF F+ FD TVD++ Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Score = 65.9 bits (159), Expect = 7e-11 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T ++YF KYG+I +M++R + K RGF F+T+ D VD+ V++ Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+G E+K+ + K Sbjct: 187 KYHTINGHNCEVKKALSK 204
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 115 bits (288), Expect = 7e-26 Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 9/177 (5%) Frame = +1 Query: 25 PSLPQPPA*GSGEMKQQDG------ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVI 186 P PQP + + ++G K+FIGGLS +T+ + +E+F K+G + D V+ Sbjct: 7 PGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66 Query: 187 MKERHTQKPRGFGFITYSDPAIVDRVI-EDNHVIDGKQVEIKRTIPK--GAAPLKDFKTK 357 M++ T++ RGFGF+TYS VD + H +DG+ VE KR + + P K Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 KIFVGG+ + +D+F K+GK+ E++ D + + RGF F+ FD TVD++ Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKI 183 Score = 65.9 bits (159), Expect = 7e-11 Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T ++YF KYG+I +M++R + K RGF F+T+ D VD+ V++ Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+G E+K+ + K Sbjct: 187 KYHTINGHNCEVKKALSK 204
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 114 bits (285), Expect = 2e-25 Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGL +T+ K +F K+G IVD V+MK+ T++ RGFGFITYS ++D Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 274 N-HVIDGKQVEIKRTIPKGA--APLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H IDG+ VE KR +P+ +P KK+FVGGL ++ +++F FG++V Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSV 144 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 I+ D T + RGF FI FD VD++ Sbjct: 145 NIVSDKDTGKKRGFAFIEFDDYDPVDKI 172 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = +1 Query: 79 GASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD 258 GA+ K+F+GGL +EYF +G+IV I+ ++ T K RGF FI + D VD Sbjct: 111 GATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVD 170 Query: 259 RVI-EDNHVIDGKQVEIKRTIPK 324 ++I + H I K +++K+ I K Sbjct: 171 KIILQKTHSIKNKTLDVKKAIAK 193 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/56 (41%), Positives = 33/56 (58%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 +K+F+GGL DD K F K+G +V+ ++ D T RSRGFGFI + +D Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMID 79
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 113 bits (282), Expect = 4e-25 Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 1/169 (0%) Frame = +1 Query: 25 PSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHT 204 PS Q A G ++ A KMF+GGLS TS K+YF K+GE+VD I + +T Sbjct: 53 PSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT 112 Query: 205 QKPRGFGFITYSDPAIVDRVIED-NHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLP 381 + RGFGFI + D + V++V++ H +DG+ ++ PK A +K KKIFVGGL Sbjct: 113 GRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLN 167 Query: 382 TALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 +++ +++F +FG++ E+ D N+ RGF FI F E V ++ Sbjct: 168 PEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKV 216 Score = 55.5 bits (132), Expect = 9e-08 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGL+ + + +EYFG++GEI + + K RGF FIT+ + V +V+E Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 274 N-HVIDGKQVEIKRTIPK 324 H + G + EIK PK Sbjct: 220 KFHTVSGSKCEIKVAQPK 237
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 112 bits (281), Expect = 5e-25 Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 2/149 (1%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVI 267 A KMF+GGLS TS K+YF K+GE+VD I + +T + RGFGFI + D A V++V+ Sbjct: 67 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 126 Query: 268 ED-NHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGL-PTALRDDEFKDFFSKFGKVVE 441 + H +DG+ ++ PK A +K KKIFVGGL P + +++ +++F +FG++ Sbjct: 127 DQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEA 181 Query: 442 HEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 E+ D N+ RGF FI F E+ V ++ Sbjct: 182 IELPMDPKLNKRRGFVFITFKEEEPVKKV 210 Score = 52.4 bits (124), Expect = 8e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Frame = +1 Query: 94 KMFIGGLSRQT-SMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 K+F+GGL+ ++ + +EYFG++GEI + + K RGF FIT+ + V +V+E Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 271 DN-HVIDGKQVEIKRTIPK 324 H + G + EIK PK Sbjct: 213 KKFHTVSGSKCEIKVAQPK 231
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 112 bits (281), Expect = 5e-25 Identities = 55/148 (37%), Positives = 90/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + + Y+ ++G++ D V+M++ +++ RGFGF+T+S A VD + Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H IDG+ VE KR + + P KK+FVGG+ + +D+F ++GK+ Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EII D + + RGFGF+ FD VD++ Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKI 157 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T ++YF +YG+I I+ +R + K RGFGF+T+ D VD+ V++ Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+G E+++ + + Sbjct: 161 KYHTINGHNAEVRKALSR 178 Score = 48.1 bits (113), Expect = 1e-05 Identities = 18/56 (32%), Positives = 37/56 (66%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 +K+F+GGL ++ ++++ ++GK+ + ++ D ++ RSRGFGF+ F + VD Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 112 bits (280), Expect = 6e-25 Identities = 56/148 (37%), Positives = 90/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + +E+F ++G++ D V+M++ T++ RGFGF+TYS VD + Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR + + A P KKIFVGG+ + +D+F +GK+ Sbjct: 88 RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETI 147 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 E++ D + + RGF F+ FD TVD++ Sbjct: 148 EVMEDRQSGKKRGFAFVTFDDHDTVDKI 175 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T ++YF YG+I +M++R + K RGF F+T+ D VD+ V++ Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+ E+K+ + K Sbjct: 179 KYHTINLHNCEVKKALSK 196 Score = 53.9 bits (128), Expect = 3e-07 Identities = 23/67 (34%), Positives = 40/67 (59%) Frame = +1 Query: 322 KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 +G P + + +K+F+GGL DD ++ F ++GK+ + ++ D T RSRGFGF+ + Sbjct: 16 QGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75 Query: 502 DAEKTVD 522 + VD Sbjct: 76 SCVEEVD 82
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 110 bits (274), Expect = 3e-24 Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + + +F ++G + D V+M++ +T++ RGFGF+TY+ VD + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR + + P KKIFVGG+ + +D+F ++GK+ Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 133 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EI+ D + + RGF F+ FD +VD++ Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHNSVDKI 161 Score = 62.8 bits (151), Expect = 6e-10 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Frame = +1 Query: 55 SGEMKQQDGA--SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGF 228 S E Q+ GA + K+F+GG+ T ++YF +YG+I IM +R + K RGF F Sbjct: 90 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149 Query: 229 ITYSDPAIVDR-VIEDNHVIDGKQVEIKRTIPK 324 +T+ D VD+ VI+ H ++G E+++ + K Sbjct: 150 VTFDDHNSVDKIVIQKYHTVNGHNCEVRKALSK 182 Score = 49.3 bits (116), Expect = 7e-06 Identities = 21/67 (31%), Positives = 39/67 (58%) Frame = +1 Query: 322 KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K +P + + +K+F+GGL D+ + F ++G + + ++ D +T RSRGFGF+ + Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 502 DAEKTVD 522 + VD Sbjct: 62 ATVEKVD 68
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 110 bits (274), Expect = 3e-24 Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + +E+F ++G++ D V+M++ T++ RGFGF+TYS VD + Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR + + A P KKIFVGG+ + +D+ +GK+ Sbjct: 88 RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETI 147 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 E++ D + + RGF F+ FD TVD++ Sbjct: 148 EVMEDRQSGKKRGFAFVTFDDHDTVDKI 175 Score = 60.1 bits (144), Expect = 4e-09 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T ++Y YG+I +M++R + K RGF F+T+ D VD+ V++ Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+G E+K+ + K Sbjct: 179 KYHTINGHNCEVKKALSK 196 Score = 53.5 bits (127), Expect = 3e-07 Identities = 23/67 (34%), Positives = 40/67 (59%) Frame = +1 Query: 322 KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 +G P + + +K+F+GGL DD ++ F ++GK+ + ++ D T RSRGFGF+ + Sbjct: 16 QGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75 Query: 502 DAEKTVD 522 + VD Sbjct: 76 SCVEEVD 82
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 109 bits (273), Expect = 4e-24 Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + + +F ++G + D V+M++ +T++ RGFGF+TY+ VD + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR + + P KKIFVGG+ + +D+F ++GK+ Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 133 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EI+ D + + RGF F+ FD +VD++ Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Score = 62.8 bits (151), Expect = 6e-10 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Frame = +1 Query: 55 SGEMKQQDGA--SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGF 228 S E Q+ GA + K+F+GG+ T ++YF +YG+I IM +R + K RGF F Sbjct: 90 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149 Query: 229 ITYSDPAIVDR-VIEDNHVIDGKQVEIKRTIPK 324 +T+ D VD+ VI+ H ++G E+++ + K Sbjct: 150 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 182 Score = 49.3 bits (116), Expect = 7e-06 Identities = 21/67 (31%), Positives = 39/67 (58%) Frame = +1 Query: 322 KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K +P + + +K+F+GGL D+ + F ++G + + ++ D +T RSRGFGF+ + Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 502 DAEKTVD 522 + VD Sbjct: 62 ATVEEVD 68
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 109 bits (273), Expect = 4e-24 Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + + +F ++G + D V+M++ +T++ RGFGF+TY+ VD + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR + + P KKIFVGG+ + +D+F ++GK+ Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 133 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EI+ D + + RGF F+ FD +VD++ Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Score = 62.0 bits (149), Expect = 1e-09 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Frame = +1 Query: 55 SGEMKQQDGA--SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGF 228 S E Q+ GA + K+F+GG+ T ++YF +YG+I IM +R + K RGF F Sbjct: 90 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149 Query: 229 ITYSDPAIVDR-VIEDNHVIDGKQVEIKRTIPK 324 +T+ D VD+ VI+ H ++G E+++ + K Sbjct: 150 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCK 182 Score = 49.3 bits (116), Expect = 7e-06 Identities = 21/67 (31%), Positives = 39/67 (58%) Frame = +1 Query: 322 KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K +P + + +K+F+GGL D+ + F ++G + + ++ D +T RSRGFGF+ + Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 502 DAEKTVD 522 + VD Sbjct: 62 ATVEEVD 68
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 109 bits (273), Expect = 4e-24 Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + + +F ++G + D V+M++ +T++ RGFGF+TY+ VD + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR + + P KKIFVGG+ + +D+F ++GK+ Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 133 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EI+ D + + RGF F+ FD +VD++ Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Score = 62.8 bits (151), Expect = 6e-10 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Frame = +1 Query: 55 SGEMKQQDGA--SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGF 228 S E Q+ GA + K+F+GG+ T ++YF +YG+I IM +R + K RGF F Sbjct: 90 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149 Query: 229 ITYSDPAIVDR-VIEDNHVIDGKQVEIKRTIPK 324 +T+ D VD+ VI+ H ++G E+++ + K Sbjct: 150 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 182 Score = 49.3 bits (116), Expect = 7e-06 Identities = 21/67 (31%), Positives = 39/67 (58%) Frame = +1 Query: 322 KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K +P + + +K+F+GGL D+ + F ++G + + ++ D +T RSRGFGF+ + Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 502 DAEKTVD 522 + VD Sbjct: 62 ATVEEVD 68
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 109 bits (273), Expect = 4e-24 Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + + +F ++G + D V+M++ +T++ RGFGF+TY+ VD + Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR + + P KKIFVGG+ + +D+F ++GK+ Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 133 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EI+ D + + RGF F+ FD +VD++ Sbjct: 134 EIMTDRGSGKKRGFAFVTFDDHDSVDKI 161 Score = 62.8 bits (151), Expect = 6e-10 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 3/93 (3%) Frame = +1 Query: 55 SGEMKQQDGA--SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGF 228 S E Q+ GA + K+F+GG+ T ++YF +YG+I IM +R + K RGF F Sbjct: 90 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 149 Query: 229 ITYSDPAIVDR-VIEDNHVIDGKQVEIKRTIPK 324 +T+ D VD+ VI+ H ++G E+++ + K Sbjct: 150 VTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 182 Score = 49.3 bits (116), Expect = 7e-06 Identities = 21/67 (31%), Positives = 39/67 (58%) Frame = +1 Query: 322 KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K +P + + +K+F+GGL D+ + F ++G + + ++ D +T RSRGFGF+ + Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 502 DAEKTVD 522 + VD Sbjct: 62 ATVEEVD 68
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 109 bits (272), Expect = 5e-24 Identities = 52/148 (35%), Positives = 91/148 (61%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + +E+F ++G + D V+M++ ++++ RGFGF+TY VD + Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H +DG+ VE KR + + + P KKIFVGG+ +D +++F ++GK+ Sbjct: 75 RPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVI 134 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EI+ D + + RGF F+ F+ +VD++ Sbjct: 135 EIMTDRGSGKKRGFAFVTFEDHDSVDKI 162 Score = 58.5 bits (140), Expect = 1e-08 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Frame = +1 Query: 55 SGEMKQQDGA--SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGF 228 S E + GA + K+F+GG+ T +EYF +YG+I IM +R + K RGF F Sbjct: 91 SREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAF 150 Query: 229 ITYSDPAIVDR-VIEDNHVIDGKQVEIKRTIPK 324 +T+ D VD+ VI+ H ++ ++++ + K Sbjct: 151 VTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSK 183 Score = 48.5 bits (114), Expect = 1e-05 Identities = 21/67 (31%), Positives = 40/67 (59%) Frame = +1 Query: 322 KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K AP + + +K+F+GGL D+ ++ F ++G + + ++ D ++ RSRGFGF+ + Sbjct: 3 KSEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTY 62 Query: 502 DAEKTVD 522 + VD Sbjct: 63 LSTDEVD 69
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 108 bits (269), Expect = 1e-23 Identities = 52/148 (35%), Positives = 90/148 (60%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + + ++ ++G++ D V+M++ +++ RGFGF+T+S VD + Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H IDG+ VE KR + + A P KK+FVGG+ + +++F ++GK+ Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIEST 129 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EII D + + RGFGF+ F+ VD++ Sbjct: 130 EIITDKQSGKKRGFGFVTFNDHDPVDKI 157 Score = 63.9 bits (154), Expect = 3e-10 Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T +EYF +YG+I I+ ++ + K RGFGF+T++D VD+ V++ Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+G E+++ + K Sbjct: 161 KYHTINGHNAEVRKALSK 178 Score = 47.8 bits (112), Expect = 2e-05 Identities = 18/56 (32%), Positives = 36/56 (64%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 +K+F+GGL ++ ++F+ ++G++ + ++ D ++ RSRGFGF+ F VD Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVD 64
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 107 bits (267), Expect = 2e-23 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 6/164 (3%) Frame = +1 Query: 55 SGEMKQQDGASAA-----KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRG 219 +G Q AS K+F+GGLS +T+ +++FGKYGEI + + T + RG Sbjct: 39 NGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRG 98 Query: 220 FGFITYSDPAIVDRV-IEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRD 396 F FI +++ +D+V D H+I+ K+V+ K+ + KIFVGGL T + D Sbjct: 99 FAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG---------KIFVGGLTTEISD 149 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 +E K +F +FG +VE E+ D ++ +GF FI FD+E+ V +L Sbjct: 150 EEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDL 193 Score = 57.8 bits (138), Expect = 2e-08 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITY-SDPAIVD 258 A K+F+GGL+ + S K YFG++G IV+ + ++ + +GF FIT+ S+ + D Sbjct: 133 ARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTD 192 Query: 259 RVIEDNHVIDGKQVEIKRTIPK 324 + I GK+V++KR PK Sbjct: 193 LLKTPKQKIAGKEVDVKRATPK 214
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 107 bits (267), Expect = 2e-23 Identities = 53/148 (35%), Positives = 88/148 (59%), Gaps = 3/148 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGLS +T+ + + Y+ ++G + D V+M++ +++ RGFGF+T+S VD + Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 274 N-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 H IDG+ VE KR + + A P KK+FVGG+ + +++F ++GK+ Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSI 129 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDEL 528 EII D + + RGF F+ FD VD++ Sbjct: 130 EIITDKQSGKKRGFAFVTFDDHDPVDKI 157 Score = 60.5 bits (145), Expect = 3e-09 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR-VIE 270 K+F+GG+ T +EYF +YG+I I+ ++ + K RGF F+T+ D VD+ V++ Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160 Query: 271 DNHVIDGKQVEIKRTIPK 324 H I+G E+++ + K Sbjct: 161 KYHTINGHNAEVRKALSK 178 Score = 45.8 bits (107), Expect = 7e-05 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 +K+F+GGL ++ ++++ ++G + + ++ D ++ RSRGFGF+ F VD Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVD 64
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 105 bits (263), Expect = 6e-23 Identities = 57/147 (38%), Positives = 89/147 (60%), Gaps = 2/147 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 KMFIGGLS T+ K+YF K+GE+VD + + T + RGFGF+ + + VD+V++ Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 274 -NHVIDGKQVEIKRTIPKGAAPLKDFK-TKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H ++GK ++ PK A +K + KKIFVGGL +++ +++F FG+V E Sbjct: 158 KEHKLNGKVID-----PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 212 Query: 448 IICDHSTNRSRGFGFIVFDAEKTVDEL 528 + D+ TN+ RGF FI F E+ V ++ Sbjct: 213 LPMDNKTNKRRGFCFITFKEEEPVKKI 239 Score = 52.8 bits (125), Expect = 6e-07 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T +EYFG +GE+ + + T K RGF FIT+ + V +++E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Query: 274 N-HVIDGKQVEIKRTIPK 324 H + + EIK + K Sbjct: 243 KYHNVGLSKCEIKVAMSK 260
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 105 bits (263), Expect = 6e-23 Identities = 57/147 (38%), Positives = 89/147 (60%), Gaps = 2/147 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 KMFIGGLS T+ K+YF K+GE+VD + + T + RGFGF+ + + VD+V++ Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 274 -NHVIDGKQVEIKRTIPKGAAPLKDFK-TKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H ++GK ++ PK A +K + KKIFVGGL +++ +++F FG+V E Sbjct: 158 KEHKLNGKVID-----PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 212 Query: 448 IICDHSTNRSRGFGFIVFDAEKTVDEL 528 + D+ TN+ RGF FI F E+ V ++ Sbjct: 213 LPMDNKTNKRRGFCFITFKEEEPVKKI 239 Score = 52.8 bits (125), Expect = 6e-07 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T +EYFG +GE+ + + T K RGF FIT+ + V +++E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Query: 274 N-HVIDGKQVEIKRTIPK 324 H + + EIK + K Sbjct: 243 KYHNVGLSKCEIKVAMSK 260
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 105 bits (261), Expect = 1e-22 Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 3/153 (1%) Frame = +1 Query: 76 DGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIV 255 + + K+FIGGL+ QTS + +F +G + D V++ T++ R FGF+TYS+ Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61 Query: 256 DRVIEDN-HVIDGKQVEIKRTIPK--GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKF 426 D + + H +DG VE+KR + + A P K KK+FVGGL + + + + FS+F Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121 Query: 427 GKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 G V + EII D + + RGFGF+ F D+ Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 154 Score = 58.9 bits (141), Expect = 8e-09 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 A K+F+GGL + G E+F ++G + A I+ ++ + K RGFGF+ + + D+ Sbjct: 95 AKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK 154 Query: 262 V-IEDNHVIDGKQVEIKRTIPK 324 + H I G +VE+K+ +PK Sbjct: 155 AAVVKFHPIQGHRVEVKKAVPK 176
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 104 bits (260), Expect = 1e-22 Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 2/147 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 KMFIGGLS T+ K+YF K+G++VD + + T + RGFGF+ + + VD+V++ Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155 Query: 274 -NHVIDGKQVEIKRTIPKGAAPLKDFK-TKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H ++GK ++ PK A +K + KKIFVGGL +++ +++F FG+V E Sbjct: 156 KEHKLNGKVID-----PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 210 Query: 448 IICDHSTNRSRGFGFIVFDAEKTVDEL 528 + D+ TN+ RGF FI F E+ V ++ Sbjct: 211 LPMDNKTNKRRGFCFITFKEEEPVKKI 237 Score = 52.8 bits (125), Expect = 6e-07 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T +EYFG +GE+ + + T K RGF FIT+ + V +++E Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240 Query: 274 N-HVIDGKQVEIKRTIPK 324 H + + EIK + K Sbjct: 241 KYHNVGLSKCEIKVAMSK 258
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 90.5 bits (223), Expect = 3e-18 Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 AK+F+G L F G + A ++ R T + RGFGF+T S ++ +E Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114 Query: 271 --DNHVIDGKQVEIKRTIPKGA---APLKDFKTK-KIFVGGLPTALRDDEFKDFFSKFGK 432 + + +DG+Q+ + + P+G+ AP DF+ +++VG LP + + FS+ GK Sbjct: 115 LLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGK 174 Query: 433 VVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 VV ++ D T RSRGFGF+ +E V++ Sbjct: 175 VVSARVVSDRETGRSRGFGFVTMSSESEVND 205 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Frame = +1 Query: 76 DGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIV 255 D + ++++G L ++ F ++G++V A ++ +R T + RGFGF+T S + V Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEV 203 Query: 256 DRVIE--DNHVIDGKQVEI 306 + I D +DG+ V + Sbjct: 204 NDAIAALDGQTLDGRAVRV 222
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 88.2 bits (217), Expect = 1e-17 Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 7/164 (4%) Frame = +1 Query: 55 SGEMKQ-QDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFI 231 +GE ++ Q+ + AK+F+G L + F + G + A ++ R T + RGFGF+ Sbjct: 84 AGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFV 143 Query: 232 TYSDPAIVDRVIE--DNHVIDGKQVEIKRTIPKGAAPLKDFKT----KKIFVGGLPTALR 393 T S D+ +E + ++G+ + + + P+G+ P + +T +I+VG +P + Sbjct: 144 TMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDID 203 Query: 394 DDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 D + FS+ GKVV ++ D + RSRGFGF+ +E + E Sbjct: 204 DARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSE 247 Score = 43.1 bits (100), Expect = 5e-04 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 ++++G + ++ F ++G++V A ++ +R + + RGFGF+T S A + I Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251 Query: 271 -DNHVIDGKQVEI 306 D +DG+ + + Sbjct: 252 LDGQTLDGRTIRV 264
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 86.3 bits (212), Expect = 5e-17 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 1/174 (0%) Frame = +1 Query: 7 GKRPLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVI 186 G P P+LP P G+ S + + L + + FK FG G+I + Sbjct: 14 GGGPAGPALPNGPLLGTNGATDD---SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70 Query: 187 MKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLK-DFKTKKI 363 ++++ T + G+GF+ YSDP D+ I + ++G +++ K A P + + Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANL 127 Query: 364 FVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +V GLP + E + FS++G+++ I+ D +T SRG GFI FD +E Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEE 181 Score = 34.3 bits (77), Expect = 0.22 Identities = 13/49 (26%), Positives = 28/49 (57%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ LS + + FG +G + + ++++ T K +GFGF+T ++ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334 Score = 33.5 bits (75), Expect = 0.37 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 85.1 bits (209), Expect = 1e-16 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 1/174 (0%) Frame = +1 Query: 7 GKRPLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVI 186 G P P+LP P G+ S + + L + + FK FG G+I + Sbjct: 14 GGGPAGPALPNGPLLGTNGATDD---SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKL 70 Query: 187 MKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLK-DFKTKKI 363 ++++ T + G+GF+ YSDP D+ I + ++G +++ K A P + + Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANL 127 Query: 364 FVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +V GLP + E + FS++G+++ I+ D T SRG GFI FD +E Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181 Score = 34.3 bits (77), Expect = 0.22 Identities = 13/49 (26%), Positives = 28/49 (57%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ LS + + FG +G + + ++++ T K +GFGF+T ++ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334 Score = 33.5 bits (75), Expect = 0.37 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 82.4 bits (202), Expect = 7e-16 Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 6/152 (3%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 AK+F+G L+ + F + G + A ++ R T + RGFGF+T S + +E Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209 Query: 271 --DNHVIDGKQVEIKRTIPKGAAPLKDFKTK----KIFVGGLPTALRDDEFKDFFSKFGK 432 + + ++G+ + + + P+G+ P + + +++VG LP + + + FS+ GK Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGK 269 Query: 433 VVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 VVE ++ D T RSRGFGF+ VDEL Sbjct: 270 VVEARVVYDRETGRSRGFGFVTM---SDVDEL 298 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/72 (33%), Positives = 44/72 (61%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVI 267 A ++++G L G ++ F ++G++V+A ++ +R T + RGFGF+T SD VD + Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD---VDELN 299 Query: 268 EDNHVIDGKQVE 303 E +DG+ +E Sbjct: 300 EAISALDGQNLE 311
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 82.0 bits (201), Expect = 9e-16 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 6/161 (3%) Frame = +1 Query: 61 EMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 E + Q+ AK+F+G L F + G + A ++ R T + RGFGF+T S Sbjct: 126 EEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMS 185 Query: 241 DPAIVDRVIE--DNHVIDGKQVEIKRTIPKGAAPLKDFKT----KKIFVGGLPTALRDDE 402 ++ +E + + ++G+ + + + +G P + +T +I+VG +P + D Sbjct: 186 TVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDAR 245 Query: 403 FKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 + FS+ GKVV ++ D T RSRGFGF+ +E + + Sbjct: 246 LEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 286
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 75.9 bits (185), Expect = 7e-14 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 1/148 (0%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S + + L + + F+ FG GEI +++++ T + G+GF+ Y DP ++ Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLK-DFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVE 441 I + ++G +++ K A P + ++V GLP + E + FS++G+++ Sbjct: 104 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160 Query: 442 HEIICDHSTNRSRGFGFIVFDAEKTVDE 525 I+ D T SRG GFI FD +E Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEE 188 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Frame = +1 Query: 331 APLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF--- 501 A D KT I V LP + +EF+ F G++ +++ D T +S G+GF+ + Sbjct: 39 ATTDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97 Query: 502 -DAEKTVDEL 528 DAEK ++ L Sbjct: 98 KDAEKAINTL 107 Score = 33.9 bits (76), Expect = 0.29 Identities = 13/49 (26%), Positives = 29/49 (59%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ LS + + FG +G + + ++++ +T K +GFGF+T ++ Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 347 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 343
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 75.9 bits (185), Expect = 7e-14 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 1/148 (0%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S + + L + + F+ FG GEI +++++ T + G+GF+ Y DP ++ Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLK-DFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVE 441 I + ++G +++ K A P + ++V GLP + E + FS++G+++ Sbjct: 109 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165 Query: 442 HEIICDHSTNRSRGFGFIVFDAEKTVDE 525 I+ D T SRG GFI FD +E Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEE 193 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Frame = +1 Query: 331 APLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF--- 501 A D KT I V LP + +EF+ F G++ +++ D T +S G+GF+ + Sbjct: 44 AATDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102 Query: 502 -DAEKTVDEL 528 DAEK ++ L Sbjct: 103 KDAEKAINTL 112 Score = 33.9 bits (76), Expect = 0.29 Identities = 13/49 (26%), Positives = 29/49 (59%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ LS + + FG +G + + ++++ +T K +GFGF+T ++ Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 352 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 348
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 75.9 bits (185), Expect = 7e-14 Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 1/148 (0%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S + + L + + F+ FG GEI +++++ T + G+GF+ Y DP ++ Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLK-DFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVE 441 I + ++G +++ K A P + ++V GLP + E + FS++G+++ Sbjct: 97 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153 Query: 442 HEIICDHSTNRSRGFGFIVFDAEKTVDE 525 I+ D T SRG GFI FD +E Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEE 181 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Frame = +1 Query: 331 APLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF--- 501 A D KT I V LP + +EF+ F G++ +++ D T +S G+GF+ + Sbjct: 32 AATDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90 Query: 502 -DAEKTVDEL 528 DAEK ++ L Sbjct: 91 KDAEKAINTL 100 Score = 33.9 bits (76), Expect = 0.29 Identities = 13/49 (26%), Positives = 29/49 (59%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ LS + + FG +G + + ++++ +T K +GFGF+T ++ Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 340 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 336
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 74.7 bits (182), Expect = 1e-13 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S + + L + + K FG GEI +++++ T + G+GF+ Y DP ++ Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLK-DFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVE 441 I + ++G +++ K A P + ++V GLP + E + FS++G+++ Sbjct: 97 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153 Query: 442 HEIICDHSTNRSRGFGFIVFDAEKTVDE 525 I+ D T SRG GFI FD +E Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEE 181 Score = 33.1 bits (74), Expect = 0.49 Identities = 12/49 (24%), Positives = 28/49 (57%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ L+ + FG +G + + ++++ +T K +GFGF+T ++ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326 Score = 32.7 bits (73), Expect = 0.64 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 74.7 bits (182), Expect = 1e-13 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S + + L + + K FG GEI +++++ T + G+GF+ Y DP ++ Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLK-DFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVE 441 I + ++G +++ K A P + ++V GLP + E + FS++G+++ Sbjct: 97 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153 Query: 442 HEIICDHSTNRSRGFGFIVFDAEKTVDE 525 I+ D T SRG GFI FD +E Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEE 181 Score = 33.1 bits (74), Expect = 0.49 Identities = 12/49 (24%), Positives = 28/49 (57%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ L+ + FG +G + + ++++ +T K +GFGF+T ++ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326 Score = 32.7 bits (73), Expect = 0.64 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 74.7 bits (182), Expect = 1e-13 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S + + L + + K FG GEI +++++ T + G+GF+ Y DP ++ Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLK-DFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVE 441 I + ++G +++ K A P + ++V GLP + E + FS++G+++ Sbjct: 97 I---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153 Query: 442 HEIICDHSTNRSRGFGFIVFDAEKTVDE 525 I+ D T SRG GFI FD +E Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEE 181 Score = 33.1 bits (74), Expect = 0.49 Identities = 12/49 (24%), Positives = 28/49 (57%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ L+ + FG +G + + ++++ +T K +GFGF+T ++ Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 327 Score = 32.7 bits (73), Expect = 0.64 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 323
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 72.8 bits (177), Expect = 6e-13 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 1/139 (0%) Frame = +1 Query: 112 LSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDG 291 L + + K FG GEI +++++ T + G+GF+ Y DP ++ I + ++G Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNG 102 Query: 292 KQVEIKRTIPKGAAPLK-DFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHST 468 +++ K A P + ++V GLP + E + FS++G+++ I+ D T Sbjct: 103 LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT 162 Query: 469 NRSRGFGFIVFDAEKTVDE 525 SRG GFI FD +E Sbjct: 163 GISRGVGFIRFDKRIEAEE 181 Score = 35.4 bits (80), Expect = 0.098 Identities = 19/67 (28%), Positives = 34/67 (50%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++ GL + + ++ F +YG I+ + I+ ++ T RG GFI + D+ IE Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF------DKRIE 178 Query: 271 DNHVIDG 291 I G Sbjct: 179 AEEAIKG 185 Score = 33.1 bits (74), Expect = 0.49 Identities = 12/49 (24%), Positives = 28/49 (57%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +F+ L+ + FG +G + + ++++ +T K +GFGF+T ++ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326 Score = 32.7 bits (73), Expect = 0.64 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IFV L + F FG V ++I D +TN+ +GFGF+ Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 72.8 bits (177), Expect = 6e-13 Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Frame = +1 Query: 61 EMKQQDGASAAK----------MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQK 210 +M + D +SA K + + GL +T+ KEYF +GE++ + K+ T Sbjct: 84 KMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH 143 Query: 211 PRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTAL 390 +GFGF+ +++ +V+ H+IDG+ + K K + + +++K+FVG + Sbjct: 144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQD-EPLRSRKVFVGRCTEDM 202 Query: 391 RDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 +DE ++FFS++G V++ I R F F+ F ++ L Sbjct: 203 TEDELREFFSQYGDVMDVFI-----PKPFRAFAFVTFADDQIAQSL 243 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/90 (25%), Positives = 44/90 (48%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 + + Q + + K+F+G + + +E+F +YG+++D I K R F F+T Sbjct: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVT 233 Query: 235 YSDPAIVDRVIEDNHVIDGKQVEIKRTIPK 324 ++D I + ++ +I G V I PK Sbjct: 234 FADDQIAQSLCGEDLIIKGISVHISNAEPK 263
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 72.0 bits (175), Expect = 9e-13 Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 13/168 (7%) Frame = +1 Query: 58 GEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITY 237 G ++++ + K+F+G L E F + G + ++ ++ T + RGFGF+T Sbjct: 76 GVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTM 135 Query: 238 SDPAIVDRVIE--DNHVIDGKQVEIKRTIPKGAAPLKDFK-----------TKKIFVGGL 378 S V+ + + + +DG+ + + P F+ + +++VG L Sbjct: 136 SSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNL 195 Query: 379 PTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 + D + FS+ GKVV+ +++ D + RSRGFGF+ + + + V+ Sbjct: 196 AWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 243 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/88 (27%), Positives = 46/88 (52%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S+ ++++G L+ + F + G++VDA ++ +R + + RGFGF+TYS V+ Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 245 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLKDF 348 IE +D I+ + + P + F Sbjct: 246 IESLDGVDLNGRAIRVSPAEARPPRRQF 273
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 71.6 bits (174), Expect = 1e-12 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Frame = +1 Query: 61 EMKQQDGASAAK----------MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQK 210 +M + D +SA K + + GL +T+ K+YF +GE++ + K+ T Sbjct: 84 KMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGH 143 Query: 211 PRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTAL 390 +GFGF+ +++ +V+ H+IDG+ + K K +P + +++K+FVG + Sbjct: 144 SKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSK-QSPDEPLRSRKVFVGRCTEDM 202 Query: 391 RDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 +E + FF ++G+VV+ I R F F+ F +K L Sbjct: 203 TAEELQQFFCQYGEVVDVFI-----PKPFRAFAFVTFADDKVAQSL 243
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 69.3 bits (168), Expect = 6e-12 Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 19/174 (10%) Frame = +1 Query: 58 GEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITY 237 G ++++ + K+F+G L E F + G + ++ ++ T + RGFGF+T Sbjct: 76 GVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTM 135 Query: 238 SDPAIVDRVIE--DNHVIDGKQVEIKRTIPKGAAPLKDFK-----------------TKK 360 S V+ + + + +DG+ + + P F+ + + Sbjct: 136 SSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNR 195 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 ++VG L + D + FS+ GKVV+ +++ D + RSRGFGF+ + + + V+ Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 249 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/88 (27%), Positives = 46/88 (52%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S+ ++++G L+ + F + G++VDA ++ +R + + RGFGF+TYS V+ Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 251 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLKDF 348 IE +D I+ + + P + F Sbjct: 252 IESLDGVDLNGRAIRVSPAEARPPRRQF 279
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 69.3 bits (168), Expect = 6e-12 Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Frame = +1 Query: 76 DGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIV 255 DG A ++++G + R + + ++G I A +M ++++ + R FGF+T Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDA 138 Query: 256 DRVIE--DNHVIDGKQVEIKRT--------IPKGAAPLKDFKTK--KIFVGGLPTALRDD 399 + VIE ++ I G+++++ T I A F K+++G L + ++ Sbjct: 139 NAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNE 198 Query: 400 EFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 KDFFS+ GKV+ ++ T++S GFGF+ F +E+ V+ Sbjct: 199 LLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVE 239 Score = 49.3 bits (116), Expect = 7e-06 Identities = 21/78 (26%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S K++IG L++ + K++F + G+++ A + + T K GFGF+++S V+ Sbjct: 182 SPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAA 241 Query: 265 IE--DNHVIDGKQVEIKR 312 I+ +N V++G+++ + + Sbjct: 242 IQALNNSVLEGQKIRVNK 259
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 69.3 bits (168), Expect = 6e-12 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 25/176 (14%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 K+Q ++ K+F+G L + F G + ++ ++ T + RGFGF+T S Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142 Query: 247 AIVDRVIE--DNHVIDGKQVEI-------KRTIPKGAAPLKDFKTK-------------- 357 + V+ + + + +DG+ + + KR P F + Sbjct: 143 SEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGS 202 Query: 358 --KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTV 519 +++VG L + D + FS+ GKVVE +I D + RS+GFGF+ +D+ + V Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S ++++G LS + F + G++V+A ++ +R + + +GFGF+TY V Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261 Query: 265 IE--DNHVIDGKQVEI 306 I+ D +DG+Q+ + Sbjct: 262 IKSLDGADLDGRQIRV 277 Score = 42.4 bits (98), Expect = 8e-04 Identities = 21/55 (38%), Positives = 28/55 (50%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 K+FVG LP + + F G V E+I D T RSRGFGF+ + V+ Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVE 146
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 68.9 bits (167), Expect = 8e-12 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Frame = +1 Query: 34 PQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKP 213 P+P A S + + K+F+GGL T+ + ++YF +G+I +AV++ +R T K Sbjct: 13 PRPSAAPSAMHGSRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 72 Query: 214 RGFGFITYSDPAIVDRVIED-NHVIDGKQVEI 306 RG+GF+T +D A DR +D N +IDG++ + Sbjct: 73 RGYGFVTMADRAAADRACKDPNPIIDGRKANV 104 Score = 50.4 bits (119), Expect = 3e-06 Identities = 24/61 (39%), Positives = 31/61 (50%) Frame = +1 Query: 340 KDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTV 519 KD KIFVGGLP D + +F FG + E +I D T +SRG+GF+ Sbjct: 27 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 86 Query: 520 D 522 D Sbjct: 87 D 87
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 68.2 bits (165), Expect = 1e-11 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 1/144 (0%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 + + L + + + F GE+ A +++++ G+GF+ Y +R I Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI--- 78 Query: 277 HVIDGKQVEIKRTIPKGAAPLKD-FKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 + ++G +++ K A P + K +++ GLP + + +D FS+FG+++ ++ Sbjct: 79 NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138 Query: 454 CDHSTNRSRGFGFIVFDAEKTVDE 525 D +T SRG FI FD +E Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEE 162 Score = 37.0 bits (84), Expect = 0.034 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 SG + +S +FI L + G + FG +G + + ++++ +T K +GFGF+T Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291 Query: 235 YSD 243 ++ Sbjct: 292 MTN 294 Score = 31.6 bits (70), Expect = 1.4 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IF+ L + F FG V ++I D +TN+ +GFGF+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 290
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 67.4 bits (163), Expect = 2e-11 Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGL+ +T+ + FGKYG IV+ ++MK+R T K RGF F+T+ PA V D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 274 --NHVIDGKQVEIKR 312 +DGK +++++ Sbjct: 69 MNGKSLDGKAIKVEQ 83 Score = 49.7 bits (117), Expect = 5e-06 Identities = 20/50 (40%), Positives = 33/50 (66%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDA 507 K+F+GGL T + + F K+G++VE ++ D TN+SRGF F+ F++ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFES 58
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 67.4 bits (163), Expect = 2e-11 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 1/144 (0%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 + + L + + + F GE+ A +++++ G+GF+ Y +R I Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS-- 79 Query: 277 HVIDGKQVEIKRTIPKGAAPLKD-FKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 ++G +++ K A P + K +++ GLP + + +D FS+FG+++ ++ Sbjct: 80 -TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138 Query: 454 CDHSTNRSRGFGFIVFDAEKTVDE 525 D +T SRG FI FD +E Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEE 162 Score = 37.0 bits (84), Expect = 0.034 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 SG + +S +FI L + G + FG +G + + ++++ +T K +GFGF+T Sbjct: 232 SGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291 Query: 235 YSD 243 ++ Sbjct: 292 MTN 294 Score = 31.6 bits (70), Expect = 1.4 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 IF+ L + F FG V ++I D +TN+ +GFGF+ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 290
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 66.2 bits (160), Expect = 5e-11 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGL+ +T+ + FGKYG IV+ ++MK+R T K RGF F+T+ PA D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 274 --NHVIDGKQVEIKR 312 +DGK +++++ Sbjct: 69 MNGKSLDGKAIKVEQ 83 Score = 49.7 bits (117), Expect = 5e-06 Identities = 20/50 (40%), Positives = 33/50 (66%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDA 507 K+F+GGL T + + F K+G++VE ++ D TN+SRGF F+ F++ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 58
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 65.5 bits (158), Expect = 9e-11 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 16/159 (10%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 +++ L+ T+ K FG+YG+I AV+MK+ K +GFGF+ + + R +E Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275 Query: 271 DNHVIDGKQVEIKRTIPKGAAP----------LKD----FKTKKIFVGGLPTALRDDEFK 408 + H D K+ + R K LK+ F++ ++V L ++ D++ K Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335 Query: 409 DFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 + FS FG V +++ D S+G GF+ F + E Sbjct: 336 EIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATE 373 Score = 58.2 bits (139), Expect = 1e-08 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 8/157 (5%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 + A +FI L + F +G IV + + Q +G+GF+ Y++ + Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQS-KGYGFVQYANEESAQK 179 Query: 262 VIE--DNHVIDGKQVEIKRTIPKGAAPLKDFKTK--KIFVGGLPTALRDDEFKDFFSKFG 429 IE + +++ KQV + + + KTK ++V L + DD+ K+ F ++G Sbjct: 180 AIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYG 239 Query: 430 KVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 K+ ++ D +S+GFGF+ F DA + V+ L Sbjct: 240 KITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 275 Score = 56.2 bits (134), Expect = 5e-08 Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 4/166 (2%) Frame = +1 Query: 43 PA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGF 222 PA G Q G ++ +++G L + + FG+ G +V + ++ T++ G+ Sbjct: 22 PATSGGATATQFGNTS--LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGY 79 Query: 223 GFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDE 402 G++ +++P R I++ + I I+ ++ IF+ L ++ Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKA 139 Query: 403 FKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 D FS FG +V ++ D S+ +S+G+GF+ + A+K +++L Sbjct: 140 LHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 65.1 bits (157), Expect = 1e-10 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGL+ +T+ + FGKYG IV+ ++MK+R T K RGF F+T PA D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 274 --NHVIDGKQVEIKR 312 +DGK +++++ Sbjct: 69 MNGKSLDGKAIKVEQ 83 Score = 47.4 bits (111), Expect = 3e-05 Identities = 19/50 (38%), Positives = 32/50 (64%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDA 507 K+F+GGL T + + F K+G++VE ++ D TN+SRGF F+ ++ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLES 58
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 65.1 bits (157), Expect = 1e-10 Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Frame = +1 Query: 73 QDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAI 252 Q + K+F+GGL T+ + ++YF +G+I +AV++ +R T K RG+GF+T +D A Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64 Query: 253 VDRVIED-NHVIDGKQVEI 306 +R +D N +IDG++ + Sbjct: 65 AERACKDPNPIIDGRKANV 83 Score = 50.1 bits (118), Expect = 4e-06 Identities = 23/52 (44%), Positives = 30/52 (57%) Frame = +1 Query: 340 KDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 KD KIFVGGLP D + +F FG + E +I D T +SRG+GF+ Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 57
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 63.9 bits (154), Expect = 3e-10 Identities = 41/169 (24%), Positives = 81/169 (47%), Gaps = 20/169 (11%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 A+ ++I L + + F + FG++GEI ++K+++ KPRGFGF+ Y++ + Sbjct: 258 ANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQK 316 Query: 262 VIED--NHVIDGKQVEIKRTIPK--------------GAAPLKDFKTKKIFVGGLPTALR 393 +++ + GK++ + R K + ++ +F+ L + Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVD 376 Query: 394 DDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 D+ K FS FG + +I+ D +S+GFGF+ + +A K V E+ Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/148 (19%), Positives = 73/148 (49%), Gaps = 2/148 (1%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 ++A +++G L + E F G + + ++ T++ G+ ++ + + ++ Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137 Query: 265 IEDNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVV 438 +++ + +I G+ I + + L+ T +F+ L A+ + D FS FGK++ Sbjct: 138 LDELNYTLIKGRPCRIMWS--QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 195 Query: 439 EHEIICDHSTNRSRGFGFIVFDAEKTVD 522 ++ D N ++G+GF+ FD+ ++ + Sbjct: 196 SCKVAVDELGN-AKGYGFVHFDSVESAN 222 Score = 50.1 bits (118), Expect = 4e-06 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 12/156 (7%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 +FI L + F +G+I+ + + +G+GF+ + + IE Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHV 228 Query: 271 ------DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGK 432 D V G V + K A +F +++ L T + + EF D F +FG+ Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTN--VYIKNLDTEITEQEFSDLFGQFGE 286 Query: 433 VVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 + ++ D + ++ RGFGF+ + A+K VDEL Sbjct: 287 ITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVDEL 321
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 63.5 bits (153), Expect = 3e-10 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Frame = +1 Query: 76 DGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIV 255 D +S K+F+G + R + + YF ++G +++ ++K++ T + +G F+ Y+ Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174 Query: 256 DRVIEDNHVIDGKQVEIKRTIPKGAAPLK----DFKTK-------KIFVGGLPTALRDDE 402 DR I H Q+ T+P G P++ D + + K+FVG L + E Sbjct: 175 DRAIRALH----NQI----TLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKE 226 Query: 403 FKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKT 516 ++ F +FG V + ++ D +SRG GF+ + +++T Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 63.5 bits (153), Expect = 3e-10 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 17/173 (9%) Frame = +1 Query: 61 EMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 + K ++ A +F+G LS K+ F G ++ A ++ ER T + RG+G++ + Sbjct: 158 KQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 217 Query: 241 DPAIVDRVIED--NHVIDGKQVEIKRTIPKGAAPLKDFKTKK-----------IFVGGLP 381 + + ++ I++ IDG+ + + K A + + KK +F+G L Sbjct: 218 NKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAG--NNDRAKKFGDTPSEPSDTLFLGNLS 275 Query: 382 TALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 D + F+K G+VV I T + +GFG++ F DA+K +D L Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Frame = +1 Query: 13 RPLRPSLPQPPA*GSGEMKQQDGASAAK----MFIGGLSRQTSMGTFKEYFGKYGEIVDA 180 RP+ + G+ + ++ G + ++ +F+G LS E F K+GE+V Sbjct: 237 RPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSV 296 Query: 181 VIMKERHTQKPRGFGFITYSDPAIVDRVIE--DNHVIDGKQVEIKRTIPK 324 I T++P+GFG++ +S+ + ++ ID + V + + P+ Sbjct: 297 RIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPR 346
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 62.8 bits (151), Expect = 6e-10 Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 6/152 (3%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + E F G I+ + ++ T++ G+ ++ + PA +R ++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI GK V I + + L+ IF+ L ++ + D FS FG ++ Sbjct: 71 TMNFDVIKGKPVRIMWS--QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 +++CD N S+G+GF+ F+ AE+ +D++ Sbjct: 129 KVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 20/149 (13%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNHVID----------- 288 KE+FG+YG + +M + H K RGFGF+++ + ++D + D Sbjct: 208 KEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266 Query: 289 ----GKQVEIKRTIPKGAAP-LKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 +Q E+KR + + ++ ++V L + D+ + F+ FG + +++ Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVM 326 Query: 454 CDHSTNRSRGFGFIVF----DAEKTVDEL 528 + RS+GFGF+ F +A K V E+ Sbjct: 327 ME--GGRSKGFGFVCFSSPEEATKAVTEM 353
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 62.8 bits (151), Expect = 6e-10 Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + + E F G I+ + ++ T++ G+ ++ + PA +R ++ Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI G+ V I + + L+ IF+ L ++ + D FS FG ++ Sbjct: 71 TMNFDVIKGRPVRIMWS--QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 +++CD N S+G+GF+ F+ AE+ +D++ Sbjct: 129 KVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Score = 47.8 bits (112), Expect = 2e-05 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 20/149 (13%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNHVID----------- 288 KE FGKYG + +M + K +GFGF+++ + +++ + D Sbjct: 208 KEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA 266 Query: 289 ----GKQVEIKRTIPKGAAP-LKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 +Q E+KR + + ++ ++V L + D+ + F FG + +++ Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM 326 Query: 454 CDHSTNRSRGFGFIVF----DAEKTVDEL 528 + RS+GFGF+ F +A K V E+ Sbjct: 327 ME--GGRSKGFGFVCFSSPEEATKAVTEM 353
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 62.4 bits (150), Expect = 8e-10 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 36/180 (20%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 K+F+G L F + G + ++ ++ T + RGFGF+T S V+ + Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 271 -DNHVIDGKQVEIKRTIPKGAAPLKDFKTK------------------------------ 357 + + IDG+ + + G AP K + Sbjct: 148 FNGYEIDGRAIRVNA----GPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSV 203 Query: 358 ----KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +++VG L + D K+ FS+ G VV+ +++ D + RSRGFGF+ + + K V++ Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263 Score = 49.3 bits (116), Expect = 7e-06 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S+ ++++G LS KE F + G +VDA ++ +R + + RGFGF+TYS V+ Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDA 264 Query: 265 IED-NHV-IDGKQVEI 306 I+ N V +DG+ + + Sbjct: 265 IDSLNGVDLDGRSIRV 280
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 62.4 bits (150), Expect = 8e-10 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVI 267 K+F+GGLS T+ + ++ F KYG+I + V++K+R TQ+ RGFGF+T+ D A + Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 268 EDNHVIDGKQVEI 306 + +DG+Q+ + Sbjct: 67 MNGKSVDGRQIRV 79 Score = 50.1 bits (118), Expect = 4e-06 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 K+FVGGL + + FSK+G++ E ++ D T RSRGFGF+ F+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 55
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.4 bits (150), Expect = 8e-10 Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVI 267 K+F+GGLS T+ + ++ F KYG+I + V++K+R TQ+ RGFGF+T+ D A + Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 268 EDNHVIDGKQVEI 306 + +DG+Q+ + Sbjct: 67 MNGKSVDGRQIRV 79 Score = 50.1 bits (118), Expect = 4e-06 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 K+FVGGL + + FSK+G++ E ++ D T RSRGFGF+ F+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 55
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.0 bits (149), Expect = 1e-09 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVI 267 K+F+GGLS T+ ++ F KYG+I + V++K+R TQ+ RGFGF+T+ D A + Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 268 EDNHVIDGKQVEI 306 + +DG+Q+ + Sbjct: 67 MNGKSVDGRQIRV 79 Score = 49.7 bits (117), Expect = 5e-06 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 K+FVGGL + + FSK+G++ E ++ D T RSRGFGF+ F+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 55
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.0 bits (149), Expect = 1e-09 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVI 267 K+F+GGLS T+ ++ F KYG+I + V++K+R TQ+ RGFGF+T+ D A + Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 268 EDNHVIDGKQVEI 306 + +DG+Q+ + Sbjct: 67 MNGKSVDGRQIRV 79 Score = 49.7 bits (117), Expect = 5e-06 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 K+FVGGL + + FSK+G++ E ++ D T RSRGFGF+ F+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 55
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.0 bits (149), Expect = 1e-09 Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVI 267 K+F+GGLS T+ ++ F KYG+I + V++K+R TQ+ RGFGF+T+ D A + Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 268 EDNHVIDGKQVEI 306 + +DG+Q+ + Sbjct: 67 MNGKSVDGRQIRV 79 Score = 49.7 bits (117), Expect = 5e-06 Identities = 21/49 (42%), Positives = 31/49 (63%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 K+FVGGL + + FSK+G++ E ++ D T RSRGFGF+ F+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 55
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 62.0 bits (149), Expect = 1e-09 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 18/172 (10%) Frame = +1 Query: 61 EMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 E + + ++++G L + E F + G + + I+ +R T + RGF F+T Sbjct: 104 ERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMG 163 Query: 241 DPAIVDRVIEDNHVIDGKQV---EIKRTIPK----GAAPLKDFKTK-----------KIF 366 V+ E + DG QV +K P+ G + K + K++ Sbjct: 164 S---VEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLY 220 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 V L AL +D F+ + ++I D S+ RSRGFGFI F + + ++ Sbjct: 221 VANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMN 272 Score = 43.5 bits (101), Expect = 4e-04 Identities = 18/56 (32%), Positives = 32/56 (57%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +++VG LP ++ + + F++ G V EI+ D T+RSRGF F+ + + E Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKE 170 Score = 35.4 bits (80), Expect = 0.098 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Frame = +1 Query: 7 GKRPLRPSLPQPPA*GSGEMK--------QQDGASAAKMFIGGLSRQTSMGTFKEYFGKY 162 G R ++ + P+ P G E+ Q S K+++ LS + ++ F Sbjct: 181 GGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQ 240 Query: 163 GEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPL 339 + A ++ +R + + RGFGFIT+S ++ ++ + ++ + ++ + AP+ Sbjct: 241 PGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPV 299
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.6 bits (148), Expect = 1e-09 Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + E F G I+ + ++ T++ G+ ++ + PA +R ++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI GK V I + + L+ IF+ L ++ + D FS FG ++ Sbjct: 71 TMNFDVIKGKPVRIMWS--QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVD 522 +++CD N S+G+GF+ F+ ++ + Sbjct: 129 KVVCDE--NGSKGYGFVHFETQEAAE 152 Score = 51.6 bits (122), Expect = 1e-06 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEIKRT 315 KE FGK+G + +M + + K +GFGF+++ + +++ + ++GKQ+ + R Sbjct: 208 KELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Query: 316 ---IPKGAAPLKDFKTKK-----------IFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 + + + F+ K ++V L + D+ + FS FG + +++ Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326 Query: 454 CDHSTNRSRGFGFIVF----DAEKTVDEL 528 + RS+GFGF+ F +A K V E+ Sbjct: 327 MEGG--RSKGFGFVCFSSPEEATKAVTEM 353
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.6 bits (148), Expect = 1e-09 Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + E F G I+ + ++ T++ G+ ++ + PA +R ++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI GK V I + + L+ IF+ L ++ + D FS FG ++ Sbjct: 71 TMNFDVIKGKPVRIMWS--QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVD 522 +++CD N S+G+GF+ F+ ++ + Sbjct: 129 KVVCDE--NGSKGYGFVHFETQEAAE 152 Score = 51.6 bits (122), Expect = 1e-06 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEIKRT 315 KE FGK+G + +M + + K +GFGF+++ + +++ + ++GKQ+ + R Sbjct: 208 KELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Query: 316 ---IPKGAAPLKDFKTKK-----------IFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 + + + F+ K ++V L + D+ + FS FG + +++ Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326 Query: 454 CDHSTNRSRGFGFIVF----DAEKTVDEL 528 + RS+GFGF+ F +A K V E+ Sbjct: 327 MEGG--RSKGFGFVCFSSPEEATKAVTEM 353
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.6 bits (148), Expect = 1e-09 Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + E F G I+ + ++ T++ G+ ++ + PA +R ++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI GK V I + + L+ IF+ L ++ + D FS FG ++ Sbjct: 71 TMNFDVIKGKPVRIMWS--QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVD 522 +++CD N S+G+GF+ F+ ++ + Sbjct: 129 KVVCDE--NGSKGYGFVHFETQEAAE 152 Score = 59.3 bits (142), Expect = 6e-09 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 12/161 (7%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 + +FI L + + F +G I+ ++ + + K G+GF+ + +R Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAER 153 Query: 262 VIE--------DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFF 417 IE D V G+ K + A K+F +++ + D+ KD F Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLF 211 Query: 418 SKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 KFG + +++ D S +S+GFGF+ F DA+K VDE+ Sbjct: 212 GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251 Score = 50.4 bits (119), Expect = 3e-06 Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEIKRT 315 K+ FGK+G + +M + + K +GFGF+++ + +++ + ++GKQ+ + R Sbjct: 208 KDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Query: 316 ---IPKGAAPLKDFKTKK-----------IFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 + + + F+ K ++V L + D+ + FS FG + +++ Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326 Query: 454 CDHSTNRSRGFGFIVF----DAEKTVDEL 528 + RS+GFGF+ F +A K V E+ Sbjct: 327 MEGG--RSKGFGFVCFSSPEEATKAVTEM 353
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.6 bits (148), Expect = 1e-09 Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + E F G I+ + ++ T++ G+ ++ + PA +R ++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI GK V I + + L+ IF+ L ++ + D FS FG ++ Sbjct: 71 TMNFDVIKGKPVRIMWS--QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVD 522 +++CD N S+G+GF+ F+ ++ + Sbjct: 129 KVVCDE--NGSKGYGFVHFETQEAAE 152 Score = 59.3 bits (142), Expect = 6e-09 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 12/161 (7%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 + +FI L + + F +G I+ ++ + + K G+GF+ + +R Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAER 153 Query: 262 VIE--------DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFF 417 IE D V G+ K + A K+F +++ + D+ KD F Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN--VYIKNFGEDMDDERLKDLF 211 Query: 418 SKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 KFG + +++ D S +S+GFGF+ F DA+K VDE+ Sbjct: 212 GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251 Score = 50.4 bits (119), Expect = 3e-06 Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 20/149 (13%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEIKRT 315 K+ FGK+G + +M + + K +GFGF+++ + +++ + ++GKQ+ + R Sbjct: 208 KDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Query: 316 ---IPKGAAPLKDFKTKK-----------IFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 + + + F+ K ++V L + D+ + FS FG + +++ Sbjct: 267 QKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326 Query: 454 CDHSTNRSRGFGFIVF----DAEKTVDEL 528 + RS+GFGF+ F +A K V E+ Sbjct: 327 MEGG--RSKGFGFVCFSSPEEATKAVTEM 353
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 60.5 bits (145), Expect = 3e-09 Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP--AIVDRVI 267 K+F+GGL+ T +++F +G I + V++K+R TQ+ RGFGFIT+++P A V Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 268 EDNHVIDGKQVEI 306 + +DG+Q+ + Sbjct: 67 MNGESLDGRQIRV 79 Score = 48.9 bits (115), Expect = 9e-06 Identities = 23/48 (47%), Positives = 29/48 (60%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K+FVGGL + +D FS FG + E ++ D T RSRGFGFI F Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITF 54
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 60.5 bits (145), Expect = 3e-09 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 36/180 (20%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 K+F+G L F + G + ++ ++ + + RGFGF+T S V+ + Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 271 -DNHVIDGKQVEIKRTIPKGAAPLKDFKTK------------------------------ 357 + + IDG+ + + G AP K + Sbjct: 149 FNGYEIDGRAIRVNA----GPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSV 204 Query: 358 ----KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +++VG L + D K+ FS+ G VV+ +++ D + RSRGFGF+ + + K V++ Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264 Score = 49.3 bits (116), Expect = 7e-06 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S+ ++++G LS KE F + G +VDA ++ +R + + RGFGF+TYS V+ Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 265 Query: 265 IEDNHVI--DGKQVEI 306 I+ + I DG+ + + Sbjct: 266 IDSLNGIDLDGRSIRV 281
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 60.5 bits (145), Expect = 3e-09 Identities = 32/147 (21%), Positives = 72/147 (48%), Gaps = 2/147 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + E F G ++ + ++ T++ G+ ++ + PA +R ++ Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI GK + I + + L+ +F+ L ++ + D FS FG ++ Sbjct: 71 TMNFDVIKGKPIRIMWS--QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVDE 525 +++CD N S+G+ F+ F+ ++ D+ Sbjct: 129 KVVCDE--NGSKGYAFVHFETQEAADK 153 Score = 54.3 bits (129), Expect = 2e-07 Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 23/179 (12%) Frame = +1 Query: 61 EMKQQDGASAAK---MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFI 231 E + + GA A + ++I + + KE F ++G+ + +M++ + K +GFGF+ Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFV 236 Query: 232 TYSDPAIVDRVIED--NHVIDGK-------------QVEIKRTIPK-GAAPLKDFKTKKI 363 +Y ++ +E+ I GK Q E+KR + + ++ + Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL 296 Query: 364 FVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 ++ L + D++ + FS FG + +++ + RS+GFGF+ F +A K V E+ Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 59.7 bits (143), Expect = 5e-09 Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 K+F+GGL+ T +++F +G I + V++K+R TQ+ RGFGFIT+++P + Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 271 -DNHVIDGKQVEI 306 + +DG+Q+ + Sbjct: 67 MNGESLDGRQIRV 79 Score = 48.9 bits (115), Expect = 9e-06 Identities = 23/48 (47%), Positives = 29/48 (60%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K+FVGGL + +D FS FG + E ++ D T RSRGFGFI F Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITF 54
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 59.3 bits (142), Expect = 6e-09 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 2/160 (1%) Frame = +1 Query: 52 GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFI 231 G G+ G + + + L + + F G I IMK+ T G+ F+ Sbjct: 72 GGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFV 131 Query: 232 TYSDPAIVDRVIEDNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEF 405 ++ I+ + + K++++ P G + K ++V LP + DDE Sbjct: 132 DFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGG----ESIKDTNLYVTNLPRTITDDEL 187 Query: 406 KDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 + F K+G +V+ I+ D T + RG F+ F+ + E Sbjct: 188 EKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQE 227
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 58.9 bits (141), Expect = 8e-09 Identities = 38/163 (23%), Positives = 80/163 (49%), Gaps = 18/163 (11%) Frame = +1 Query: 67 KQQDGA--SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 + + GA S +++ L ++ + K+ FGKYG+I AV+MK++ + R FGF+ + Sbjct: 215 RSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFV 273 Query: 241 DPAIVDRVIEDNHVI---------------DGKQVEIKRTI-PKGAAPLKDFKTKKIFVG 372 P +E + I ++ E++R + + + + +++ Sbjct: 274 SPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLK 333 Query: 373 GLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 L ++ D++ K+ FS++G V +++ +S SRGFGF+ + Sbjct: 334 NLDDSVNDEKLKEMFSEYGNVTSCKVMM-NSQGLSRGFGFVAY 375 Score = 42.4 bits (98), Expect = 8e-04 Identities = 24/142 (16%), Positives = 64/142 (45%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 + +++G L + + F + + + + ++ T + G+ ++ +++P R +E Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 + + I+ + + +F+ L ++ + + FS FG ++ ++ Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 163 Query: 451 ICDHSTNRSRGFGFIVFDAEKT 516 D RS+G+GF+ F+ E+T Sbjct: 164 AMD-VVGRSKGYGFVQFEKEET 184 Score = 33.1 bits (74), Expect = 0.49 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 + +++ L + KE F +YG + +M RGFGF+ YS+P Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS-RGFGFVAYSNP 378
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 58.9 bits (141), Expect = 8e-09 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 15/181 (8%) Frame = +1 Query: 4 EGKRPLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAV 183 E KR P+ + PA QD +F+G LS + F +YG IV A Sbjct: 236 EKKRKAEPASEERPA--KITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGAR 293 Query: 184 IMKERHTQKPRGFGFITYSDPAIVDRVIEDNHV--IDGKQVEIKRTIPKGAAPLKDFKTK 357 ++ + + + +G+G++ + P + N IDG+ V + + P+ A P + + Sbjct: 294 VIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQR 353 Query: 358 -------------KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIV 498 +FVG L +D+ F G + + D + R +GFG++ Sbjct: 354 AGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413 Query: 499 F 501 F Sbjct: 414 F 414 Score = 42.4 bits (98), Expect = 8e-04 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Frame = +1 Query: 22 RPSLPQPPA*G-SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKER 198 RP+ PQP A +G Q + +F+G LS + FG G+I + + Sbjct: 342 RPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401 Query: 199 HTQKPRGFGFITYSDPAIVDRVIEDN-HVIDGKQVEIKRTIPK 324 + + +GFG++T+SD + +E N H I G+ + + P+ Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444 Score = 35.8 bits (81), Expect = 0.075 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = +1 Query: 349 KTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 +T +FVG L + D F ++G +V +I D + RS+G+G++ F+ Sbjct: 261 ETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 58.9 bits (141), Expect = 8e-09 Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 18/165 (10%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIV---- 255 A +F L+ + +E+F G++ D ++ +R++++ RG ++ + D + V Sbjct: 152 ARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI 211 Query: 256 ----DRVIEDNHVIDGKQVEIKRT------IPKGAAPLKDFKTKKIFVGGLPTALRDDEF 405 RV+ ++ Q E R + KG+A +++VG L + +D Sbjct: 212 GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAG-----PMRLYVGSLHFNITEDML 266 Query: 406 KDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 + F FG++ +++ D T RS+G+GFI F A+K +++L Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Score = 39.3 bits (90), Expect = 0.007 Identities = 17/67 (25%), Positives = 33/67 (49%) Frame = +1 Query: 70 QQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPA 249 Q+ A ++++G L + + F +G I +M + T + +G+GFIT+SD Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302 Query: 250 IVDRVIE 270 + +E Sbjct: 303 CAKKALE 309
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 58.9 bits (141), Expect = 8e-09 Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 2/150 (1%) Frame = +1 Query: 79 GASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD 258 G A +++G L + E F G I+ + ++ T++ G+ +I + PA + Sbjct: 7 GYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAE 66 Query: 259 RVIEDNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGK 432 R ++ + VI G+ + I + + L+ +F+ L ++ + D FS FG Sbjct: 67 RALDTMNFEVIKGRPIRIMWS--QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGN 124 Query: 433 VVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 ++ +++CD + SRG+GF+ F+ ++ + Sbjct: 125 ILSCKVVCDE--HGSRGYGFVHFETQEAAN 152 Score = 50.4 bits (119), Expect = 3e-06 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 13/162 (8%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 + +FI L + F +G I+ ++ + H RG+GF+ + +R Sbjct: 96 SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETQEAANR 153 Query: 262 VIE--DNHVIDGKQVEI-------KRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDF 414 I+ + +++ ++V + +R + GA K + +++ + D ++ Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGA---KVMEFTNVYIKNFGEDMDDKRLREI 210 Query: 415 FSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 FS FG + +++ D T RSRGFGF+ + +A+K V E+ Sbjct: 211 FSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251 Score = 29.3 bits (64), Expect = 7.1 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIK 309 ++ F YG I A +M E K GFGF+ +S P + + + ++G+ V K Sbjct: 311 RKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTE---MNGRIVSTK 361
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 58.5 bits (140), Expect = 1e-08 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 2/94 (2%) Frame = +1 Query: 253 VDRVIEDN-HVIDGKQVEIKRTIPKGAAPLKDFK-TKKIFVGGLPTALRDDEFKDFFSKF 426 VD+V++ H ++GK ++ PK A +K + KKIFVGGL +++ +++F F Sbjct: 3 VDKVMDQKEHKLNGKVID-----PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 57 Query: 427 GKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 G+V E+ D+ TN+ RGF FI F E+ V ++ Sbjct: 58 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 91 Score = 52.8 bits (125), Expect = 6e-07 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+GGLS T +EYFG +GE+ + + T K RGF FIT+ + V +++E Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 94 Query: 274 N-HVIDGKQVEIKRTIPK 324 H + + EIK + K Sbjct: 95 KYHNVGLSKCEIKVAMSK 112
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 58.5 bits (140), Expect = 1e-08 Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVI 267 K+FIGGL+ +T+ ++ F KYG I + V++K+R T++ RGFGF+T+ D A + Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 268 EDNHVIDGKQVEI 306 + +DG+Q+ + Sbjct: 66 MNGKSVDGRQIRV 78 Score = 49.3 bits (116), Expect = 7e-06 Identities = 20/49 (40%), Positives = 32/49 (65%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 K+F+GGL +D + F+K+G++ E ++ D T RSRGFGF+ F+ Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFE 54
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 58.2 bits (139), Expect = 1e-08 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 2/75 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIGGL+R+T+ K FGK+G I + +++K+R T K RGF FIT+ +PA +D Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 274 --NHVIDGKQVEIKR 312 + GK +++++ Sbjct: 68 MNGKSLHGKAIKVEQ 82 Score = 38.1 bits (87), Expect = 0.015 Identities = 20/49 (40%), Positives = 28/49 (57%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 K+F+GGL + K F K G + E +I D T++SRGF FI F+ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFE 56
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 57.8 bits (138), Expect = 2e-08 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 1/159 (0%) Frame = +1 Query: 52 GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFI 231 GS ++ AS + + L + + F G I IM++ T G+ F+ Sbjct: 112 GSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFV 171 Query: 232 TYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPL-KDFKTKKIFVGGLPTALRDDEFK 408 ++ R I+ V++G V KR A P + K ++V LP + DD+ Sbjct: 172 DFTSEMDSQRAIK---VLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLD 228 Query: 409 DFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 F K+G +V+ I+ D T R RG F+ ++ + E Sbjct: 229 TIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 267
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 57.8 bits (138), Expect = 2e-08 Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 18/165 (10%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIV---- 255 A +F L+ + +E+F G++ D ++ +R++++ +G ++ + D + V Sbjct: 152 ARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI 211 Query: 256 ----DRVIEDNHVIDGKQVEIKRT------IPKGAAPLKDFKTKKIFVGGLPTALRDDEF 405 RV+ ++ Q E R + KG+A +++VG L + +D Sbjct: 212 GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAG-----PMRLYVGSLHFNITEDML 266 Query: 406 KDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 + F FG++ +++ D T RS+G+GFI F A+K +++L Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Score = 39.3 bits (90), Expect = 0.007 Identities = 17/67 (25%), Positives = 33/67 (49%) Frame = +1 Query: 70 QQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPA 249 Q+ A ++++G L + + F +G I +M + T + +G+GFIT+SD Sbjct: 243 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 302 Query: 250 IVDRVIE 270 + +E Sbjct: 303 CAKKALE 309
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 57.4 bits (137), Expect = 2e-08 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVI 267 + K+FIGGLS T + ++ F +G++VDA ++ +R T + RGFGF+ ++D I Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 268 E--DNHVIDGKQVEIKRTIPKGAAP 336 D ++G+ + + + +AP Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118 Score = 53.5 bits (127), Expect = 3e-07 Identities = 24/51 (47%), Positives = 33/51 (64%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAE 510 K+F+GGL D +D F+ FG VV+ ++I D T RSRGFGF+ F+ E Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 57.4 bits (137), Expect = 2e-08 Identities = 27/56 (48%), Positives = 38/56 (67%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 + FVGGL A D E + FS+FG+V++ +II D T RSRGFGF+ F EK++ + Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKD 62 Score = 53.5 bits (127), Expect = 3e-07 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 + F+GGL+ T + F ++GE++D+ I+ +R T + RGFGF+T+ D + I++ Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 274 --NHVIDGKQVEIKRTIPKG 327 +DG+ + + +G Sbjct: 67 MNGKELDGRTITVNEAQSRG 86
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 57.0 bits (136), Expect = 3e-08 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 20/184 (10%) Frame = +1 Query: 25 PSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHT 204 PS + S + Q + +F+G LS Q + K F +G I DA ++K+ T Sbjct: 84 PSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMAT 143 Query: 205 QKPRGFGFITYSDPAIVDRVIED--NHVIDGKQVEIKRTIPKGAAPLKDFKTK------- 357 K +G+GF+++ + + I+ + G+Q+ K AP +++ Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 203 Query: 358 -----------KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 ++ GG+ + L + + FS FG+++E + D +G+ F+ F+ Sbjct: 204 EVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFN 257 Query: 505 AEKT 516 + ++ Sbjct: 258 SHES 261 Score = 47.0 bits (110), Expect = 3e-05 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 15/159 (9%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +++G LSR + + F + G + ++ + P F A + Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68 Query: 277 HVIDGKQVEIK-RTIP----KGAAPLKDFKTKK------IFVGGLPTALRDDEFKDFFSK 423 I GK+V++ T P K + T++ +FVG L + ++ K F+ Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAP 128 Query: 424 FGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 FG++ + ++ D +T +S+G+GF+ F DAE + ++ Sbjct: 129 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 57.0 bits (136), Expect = 3e-08 Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 2/146 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A ++IG L + E F G I+ + ++ T++ G+ +I + PA +R ++ Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI G+ + I + + L+ +F+ L ++ + D FS FG ++ Sbjct: 71 TMNFEVIKGRPIRIMWS--QRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVD 522 +++CD SRG+GF+ F+ ++ + Sbjct: 129 KVVCDE--YGSRGYGFVHFETQEAAN 152 Score = 48.9 bits (115), Expect = 9e-06 Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 13/162 (8%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 + +FI L + F +G+I+ ++ + + RG+GF+ + +R Sbjct: 96 SGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQEAANR 153 Query: 262 VIE--DNHVIDGKQVEI-------KRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDF 414 I+ + +++ ++V + +R + GA K + +++ + D K+ Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGA---KVMEFTNVYIKNFGEDMDDKRLKEI 210 Query: 415 FSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 FS FG + +++ D+S RSRGFGF+ + +A+K V E+ Sbjct: 211 FSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEM 251
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 56.6 bits (135), Expect = 4e-08 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 + E++ +D A+ +F+ + KE F +YG ++++ + K +GFGF+ Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVR 245 Query: 235 YSDPAIVDRVIEDNH--VIDGKQVEIKRT---IPKGAAPLKDFKTKK-----------IF 366 Y + + D H IDGK + + R I + A + F+ + I+ Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 305 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 + L + D++ K+ FS FG + +++ + + +GFG + F +A K VDE+ Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Score = 47.0 bits (110), Expect = 3e-05 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + + F G + I ++ T+ P G+G++ + PA + + Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + +I+GK + + P L+ IF+ L ++ + FS FG ++ Sbjct: 78 TMNFDLINGKPFRLMWSQPDDR--LRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135 Query: 445 EIICDHSTNRSRGFGFIVFDA 507 +++CD N S+G+ ++ FD+ Sbjct: 136 KVVCD--DNGSKGYAYVHFDS 154
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 56.6 bits (135), Expect = 4e-08 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 + E++ +D A+ +F+ + KE F +YG ++++ + K +GFGF+ Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVR 245 Query: 235 YSDPAIVDRVIEDNH--VIDGKQVEIKRT---IPKGAAPLKDFKTKK-----------IF 366 Y + + D H IDGK + + R I + A + F+ + I+ Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 305 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 + L + D++ K+ FS FG + +++ + + +GFG + F +A K VDE+ Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Score = 47.0 bits (110), Expect = 3e-05 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + + F G + I ++ T+ P G+G++ + PA + + Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + +I+GK + + P L+ IF+ L ++ + FS FG ++ Sbjct: 78 TMNFDLINGKPFRLMWSQPDDR--LRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135 Query: 445 EIICDHSTNRSRGFGFIVFDA 507 +++CD N S+G+ ++ FD+ Sbjct: 136 KVVCD--DNGSKGYAYVHFDS 154
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 56.6 bits (135), Expect = 4e-08 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 + E++ +D A+ +F+ + KE F +YG ++++ + K +GFGF+ Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVR 245 Query: 235 YSDPAIVDRVIEDNH--VIDGKQVEIKRT---IPKGAAPLKDFKTKK-----------IF 366 Y + + D H IDGK + + R I + A + F+ + I+ Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 305 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 + L + D++ K+ FS FG + +++ + + +GFG + F +A K VDE+ Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Score = 47.0 bits (110), Expect = 3e-05 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + + F G + I ++ T+ P G+G++ + PA + + Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + +I+GK + + P L+ IF+ L ++ + FS FG ++ Sbjct: 78 TMNFDLINGKPFRLMWSQPDDR--LRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135 Query: 445 EIICDHSTNRSRGFGFIVFDA 507 +++CD N S+G+ ++ FD+ Sbjct: 136 KVVCD--DNGSKGYAYVHFDS 154
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 56.6 bits (135), Expect = 4e-08 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 + E++ +D A+ +F+ + KE F +YG ++++ + K +GFGF+ Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVR 245 Query: 235 YSDPAIVDRVIEDNH--VIDGKQVEIKRT---IPKGAAPLKDFKTKK-----------IF 366 Y + + D H IDGK + + R I + A + F+ + I+ Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 305 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 + L + D++ K+ FS FG + +++ + + +GFG + F +A K VDE+ Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Score = 47.0 bits (110), Expect = 3e-05 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + + F G + I ++ T+ P G+G++ + PA + + Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + +I+GK + + P L+ IF+ L ++ + FS FG ++ Sbjct: 78 TMNFDLINGKPFRLMWSQPDDR--LRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135 Query: 445 EIICDHSTNRSRGFGFIVFDA 507 +++CD N S+G+ ++ FD+ Sbjct: 136 KVVCD--DNGSKGYAYVHFDS 154
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 56.6 bits (135), Expect = 4e-08 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 + E++ +D A+ +F+ + KE F +YG ++++ + K +GFGF+ Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVR 245 Query: 235 YSDPAIVDRVIEDNH--VIDGKQVEIKRT---IPKGAAPLKDFKTKK-----------IF 366 Y + + D H IDGK + + R I + A + F+ + I+ Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 305 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 + L + D++ K+ FS FG + +++ + + +GFG + F +A K VDE+ Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Score = 47.0 bits (110), Expect = 3e-05 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + + F G + I ++ T+ P G+G++ + PA + + Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + +I+GK + + P L+ IF+ L ++ + FS FG ++ Sbjct: 78 TMNFDLINGKPFRLMWSQPDDR--LRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135 Query: 445 EIICDHSTNRSRGFGFIVFDA 507 +++CD N S+G+ ++ FD+ Sbjct: 136 KVVCD--DNGSKGYAYVHFDS 154
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 56.6 bits (135), Expect = 4e-08 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 20/178 (11%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 + E++ +D A+ +F+ + KE F +YG ++++ + K +GFGF+ Sbjct: 187 AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVR 245 Query: 235 YSDPAIVDRVIEDNH--VIDGKQVEIKRT---IPKGAAPLKDFKTKK-----------IF 366 Y + + D H IDGK + + R I + A + F+ + I+ Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIY 305 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 + L + D++ K+ FS FG + +++ + + +GFG + F +A K VDE+ Sbjct: 306 IKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Score = 47.0 bits (110), Expect = 3e-05 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + + F G + I ++ T+ P G+G++ + PA + + Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + +I+GK + + P L+ IF+ L ++ + FS FG ++ Sbjct: 78 TMNFDLINGKPFRLMWSQPDDR--LRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135 Query: 445 EIICDHSTNRSRGFGFIVFDA 507 +++CD N S+G+ ++ FD+ Sbjct: 136 KVVCD--DNGSKGYAYVHFDS 154
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 56.2 bits (134), Expect = 5e-08 Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 2/150 (1%) Frame = +1 Query: 79 GASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD 258 G A ++IG L + E F G I+ + ++ T++ + +I + PA + Sbjct: 7 GYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAE 66 Query: 259 RVIEDNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGK 432 R ++ + VI G+ + I + + L+ +F+ L ++ + D FS FG Sbjct: 67 RALDTMNFEVIKGRPIRIMWS--QRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGN 124 Query: 433 VVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 ++ +++CD + SRG+GF+ F+ + + Sbjct: 125 ILSCKVVCDE--HGSRGYGFVHFETHEAAN 152 Score = 40.8 bits (94), Expect = 0.002 Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 23/152 (15%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQV------- 300 +E F +G + +M + + + RGFGF+ Y + + + + ++GK+V Sbjct: 208 REIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSE---MNGKEVNGRMIYV 263 Query: 301 -----------EIKRTIPK-GAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 E+KR + + ++ ++V L + DD + F +G + Sbjct: 264 GRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSA 323 Query: 445 EIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 +++ + S+GFGF+ F +A K V E+ Sbjct: 324 KVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 55.8 bits (133), Expect = 7e-08 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++GGL + S E F + G +V+ + K+R T + +G+GF+ + D I+ Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72 Query: 271 DNHVID--GKQVEIKRTIPKGAAPLKDFKT-KKIFVGGLPTALRDDEFKDFFSKFGKVVE 441 ++I GK + + K +A K+ IF+G L + + D FS FG +++ Sbjct: 73 IMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128 Query: 442 -HEIICDHSTNRSRGFGFIVF 501 +I+ D T S+G+ FI F Sbjct: 129 TPKIMRDPDTGNSKGYAFINF 149 Score = 33.5 bits (75), Expect = 0.37 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 ++VGGL + + + F + G VV + D T + +G+GF+ F +E+ D Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 55.8 bits (133), Expect = 7e-08 Identities = 37/170 (21%), Positives = 79/170 (46%), Gaps = 20/170 (11%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 +++D ++ +F+G LS + + K F +G+I DA ++K+ T K +G+GF+++ + Sbjct: 106 QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165 Query: 247 AIVDRVI--EDNHVIDGKQVEIKRTIPKGAAP--LKDFKTKK----------------IF 366 + I + G+Q+ K AP ++ TK+ ++ Sbjct: 166 LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVY 225 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKT 516 GG+ + L D + FS FG+++E + + +G+ F+ F ++ Sbjct: 226 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHES 269 Score = 49.7 bits (117), Expect = 5e-06 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 21/170 (12%) Frame = +1 Query: 73 QDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKE----RHTQKPRGFGFI--T 234 +D +++G LSR + + F + G ++ E R GF + T Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62 Query: 235 YSDPAIVDRVIE-----------DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLP 381 +DP E + I GK+V++ + +FVG L Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLS 122 Query: 382 TALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTV 519 + ++ K F+ FGK+ + ++ D +T +S+G+GF+ F DAE + Sbjct: 123 PEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 55.8 bits (133), Expect = 7e-08 Identities = 25/54 (46%), Positives = 35/54 (64%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTV 519 + FVGGL A D+ + FS+FG + + +II D T RSRGFGF+ F EK++ Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSM 60 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 + F+GGL+ T+ + ++ F ++G+I D+ I+ +R T + RGFGF+T+ D + IE Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 271 -DNHVIDGKQVEIKRTIPKGA 330 + +DG+ + + +G+ Sbjct: 67 MNGQELDGRNITVNEAQSRGS 87
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 55.8 bits (133), Expect = 7e-08 Identities = 35/162 (21%), Positives = 79/162 (48%), Gaps = 9/162 (5%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 +QQ A ++++G +S + T + F +G I + + TQK +GF F+ Y P Sbjct: 122 RQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIP 181 Query: 247 AIVDRVIE--DNHVIDGKQVEIKR--TIPKGAAPLKDFKTK-----KIFVGGLPTALRDD 399 +E + ++ G+ +++ R +P+ + + + + +I+V + L ++ Sbjct: 182 EGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEE 241 Query: 400 EFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 + K F FG ++ ++ S + +G+GFI + ++ +DE Sbjct: 242 DIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDE 283
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 55.8 bits (133), Expect = 7e-08 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 5/154 (3%) Frame = +1 Query: 73 QDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGF-GFITYSDPA 249 +D +++G LSR + + F + G ++ E + P F F + D A Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62 Query: 250 IVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFG 429 + ++ GK+V++ + +FVG L + ++ K F+ FG Sbjct: 63 AALAAMNGRKIL-GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFG 121 Query: 430 KVVEHEIICDHSTNRSRGFGFIVF----DAEKTV 519 K+ + ++ D +T +S+G+GF+ F DAE + Sbjct: 122 KISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155 Score = 55.5 bits (132), Expect = 9e-08 Identities = 37/170 (21%), Positives = 79/170 (46%), Gaps = 20/170 (11%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 +++D ++ +F+G LS + + K F +G+I DA ++K+ T K +G+GF+++ + Sbjct: 89 QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 148 Query: 247 AIVDRVI--EDNHVIDGKQVEIKRTIPKGAAP--LKDFKTKK----------------IF 366 + I + G+Q+ K AP ++ TK+ ++ Sbjct: 149 LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVY 208 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKT 516 GG+ + L D + FS FG+++E + + +G+ F+ F ++ Sbjct: 209 CGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHES 252
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 55.5 bits (132), Expect = 9e-08 Identities = 25/54 (46%), Positives = 36/54 (66%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTV 519 + FVGGL A D++ + FS+FG V++ +II D + RSRGFGF+ F EK + Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60 Score = 51.6 bits (122), Expect = 1e-06 Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 + F+GGL+ T+ + F ++G+++D+ I+ +R + + RGFGF+T+ D + IE+ Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 274 --NHVIDGKQVEIKRTIPKGA 330 +DG+ + + +G+ Sbjct: 67 MNGKELDGRVITVNEAQSRGS 87
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 55.5 bits (132), Expect = 9e-08 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 1/159 (0%) Frame = +1 Query: 52 GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFI 231 G G+ + +G + + + L + + F G I IMK+ T G+ F+ Sbjct: 92 GGGDTQAVNGTN---LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFV 148 Query: 232 TYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPL-KDFKTKKIFVGGLPTALRDDEFK 408 ++ I+ ++G V KR A P + K ++V LP + DDE + Sbjct: 149 DFASEIDAQNAIK---TVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELE 205 Query: 409 DFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 F K+G +V+ I+ D T R RG F+ F+ + E Sbjct: 206 KIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQE 244
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 + F+GGL+ T + F +YGE++D+ I+ +R T + RGFGF+T+ D + IE Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 271 -DNHVIDGKQVEIKRTIPKGA 330 + +DG+ + + +G+ Sbjct: 69 MNGQDLDGRSITVNEAQSRGS 89 Score = 53.5 bits (127), Expect = 3e-07 Identities = 25/56 (44%), Positives = 37/56 (66%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 + FVGGL A D + FS++G+V++ +II D T RSRGFGF+ F EK++ + Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 + F+GGL+ T + + F ++GE+VD+ I+ +R T + RGFGF+T+ D + IE Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 271 -DNHVIDGKQVEIKRTIPKGA 330 + +DG+ + + +G+ Sbjct: 69 MNGQDLDGRSITVNEAQSRGS 89 Score = 53.5 bits (127), Expect = 3e-07 Identities = 25/56 (44%), Positives = 37/56 (66%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 + FVGGL A + + FS+FG++V+ +II D T RSRGFGF+ F EK++ + Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 55.1 bits (131), Expect = 1e-07 Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 20/160 (12%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED- 273 +F+G LS + + K F +G I DA ++K+ T K +G+GF+++ + + I+ Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 274 -NHVIDGKQVEIKRTIPKGAAPLKDFKTKK------------------IFVGGLPTALRD 396 + G+Q+ K AP +++ ++ GG+ + L + Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKT 516 + FS FG+++E + D +G+ F+ F + ++ Sbjct: 228 QLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHES 261 Score = 47.0 bits (110), Expect = 3e-05 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 15/159 (9%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +++G LSR + + F + G + ++ + P F A + Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68 Query: 277 HVIDGKQVEIK-RTIP----KGAAPLKDFKTKK------IFVGGLPTALRDDEFKDFFSK 423 I GK+V++ T P K + T++ +FVG L + ++ K F+ Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP 128 Query: 424 FGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 FG++ + ++ D +T +S+G+GF+ F DAE + ++ Sbjct: 129 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 + F+GGL+ T + F +YG+++D+ I+ +R T + RGFGF+T+ D + IE Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 271 -DNHVIDGKQVEIKRTIPKGA 330 + +DG+ + + +G+ Sbjct: 69 MNGQDLDGRSITVNEAQSRGS 89 Score = 52.0 bits (123), Expect = 1e-06 Identities = 24/56 (42%), Positives = 35/56 (62%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 + FVGGL A D + F+++G V++ +II D T RSRGFGF+ F EK + + Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 54.7 bits (130), Expect = 2e-07 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 4/148 (2%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++GGL + S E + G +V + K+R T +GFGF+ + D I+ Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72 Query: 271 DNHVID--GKQVEIKRTIPKGAAPLKDFKT-KKIFVGGLPTALRDDEFKDFFSKFGKVVE 441 ++I GK +++ K +A K+ IFVG L + + D FS FG +++ Sbjct: 73 ILNMIKLYGKPIKVN----KASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQ 128 Query: 442 -HEIICDHSTNRSRGFGFIVFDAEKTVD 522 +I+ D + S+GF FI F + + D Sbjct: 129 VPKIMRDVDSGTSKGFAFINFASFEASD 156
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 2/160 (1%) Frame = +1 Query: 52 GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFI 231 G G G++ + + L + + F G I IM++ T G+ F+ Sbjct: 97 GGGRDGHGGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFV 156 Query: 232 TYSDPAIVDRVIEDNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEF 405 ++ R I+ + + K++++ P G + K ++V LP + DD+ Sbjct: 157 DFAAETDSQRAIKSLNGITVRNKRLKVSYARPGG----ESIKDTNLYVTNLPRTITDDQL 212 Query: 406 KDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 F K+G +V+ I+ D T + RG F+ F+ + E Sbjct: 213 DTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQE 252
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 2/80 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 + F+GGL+ TS + + F YGEI+D+ ++ +R T + RGFGF+T+S + IE Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 271 -DNHVIDGKQVEIKRTIPKG 327 + +DG+ + + + +G Sbjct: 69 MNGKELDGRNITVNQAQSRG 88 Score = 52.4 bits (124), Expect = 8e-07 Identities = 20/54 (37%), Positives = 37/54 (68%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTV 519 + FVGGL A ++ ++ F+ +G++++ ++I D T RSRGFGF+ F +E ++ Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSM 62
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 54.7 bits (130), Expect = 2e-07 Identities = 22/54 (40%), Positives = 37/54 (68%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTV 519 + FVGGL A ++ + F+ FG+V++ ++I D T RSRGFGF+ F +E+++ Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSM 62 Score = 53.9 bits (128), Expect = 3e-07 Identities = 23/80 (28%), Positives = 48/80 (60%), Gaps = 2/80 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 + F+GGL+ T+ T ++ F +G+++D+ ++ +R T + RGFGF+T+S + IE Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 271 -DNHVIDGKQVEIKRTIPKG 327 + +DG+ + + + +G Sbjct: 69 MNGKELDGRNITVNQAQSRG 88
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 7/166 (4%) Frame = +1 Query: 16 PLRPSLPQPPA*GSGEMKQQ-------DGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIV 174 P P P P+ S D S ++I GL T+ + YG+IV Sbjct: 30 PAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIV 89 Query: 175 DAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKT 354 + ++ T K +G+GF+ + PA + + +G Q ++ A ++ Sbjct: 90 STKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKA-NGVQAQM--------AKQQEQDP 140 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGF 492 +++ LP ++ + E ++ FG+V+ ++ D S+ SRG GF Sbjct: 141 TNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGF 185 Score = 42.4 bits (98), Expect = 8e-04 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 +++ GLP D + +GK+V + I D +TN+ +G+GF+ FD A+K V L Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL 123
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 54.7 bits (130), Expect = 2e-07 Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 7/166 (4%) Frame = +1 Query: 16 PLRPSLPQPPA*GSGEMKQQ-------DGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIV 174 P P P P+ S D S ++I GL T+ + YG+IV Sbjct: 30 PAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIV 89 Query: 175 DAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKT 354 + ++ T K +G+GF+ + PA + + G Q ++ A ++ Sbjct: 90 STKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKA-SGVQAQM--------AKQQEQDP 140 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGF 492 +++ LP ++ + E ++ FG+V+ I+ D S+ SRG GF Sbjct: 141 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGF 185 Score = 42.4 bits (98), Expect = 8e-04 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 +++ GLP D + +GK+V + I D +TN+ +G+GF+ FD A+K V L Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/136 (21%), Positives = 72/136 (52%), Gaps = 8/136 (5%) Frame = +1 Query: 112 LSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH---- 279 +S+ TS +E+F +G+I D +++++HT++ +G F+ ++ + R +E+ H Sbjct: 32 ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91 Query: 280 -VIDGKQVEIKRTIPKGAAPLKDFKTK---KIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 D K +++ + + +D + + +IFV +P + +++ ++ F +G + Sbjct: 92 GPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCS 150 Query: 448 IICDHSTNRSRGFGFI 495 +I + T S+G G++ Sbjct: 151 VIKNKVTGESKGLGYV 166 Score = 30.8 bits (68), Expect = 2.4 Identities = 16/73 (21%), Positives = 36/73 (49%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 SG + + ++F+ + + + +E F YG+I ++K + T + +G G++ Sbjct: 109 SGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVR 167 Query: 235 YSDPAIVDRVIED 273 Y P+ + IE+ Sbjct: 168 YLKPSQAAQAIEN 180
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 54.3 bits (129), Expect = 2e-07 Identities = 37/157 (23%), Positives = 68/157 (43%) Frame = +1 Query: 22 RPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERH 201 R S P G G D S ++I GL T+ + YG+IV + ++ Sbjct: 35 RNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKT 94 Query: 202 TQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLP 381 T K +G+GF+ + P+ + + G Q ++ A ++ +++ LP Sbjct: 95 TNKCKGYGFVDFDSPSSAQKAVTALKA-SGVQAQM--------AKQQEQDPTNLYISNLP 145 Query: 382 TALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGF 492 ++ + E + FG+V+ I+ D ++ SRG GF Sbjct: 146 LSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGF 181 Score = 39.7 bits (91), Expect = 0.005 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +++ GL D + +GK+V + I D +TN+ +G+GF+ FD+ + + Sbjct: 60 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQK 114
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 53.9 bits (128), Expect = 3e-07 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 1/155 (0%) Frame = +1 Query: 64 MKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 M +S + + L + + F G I IM++ T G+ F+ ++ Sbjct: 118 MMHDQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTS 177 Query: 244 PAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPL-KDFKTKKIFVGGLPTALRDDEFKDFFS 420 R I+ V++G V KR A P + K ++V LP + DD+ F Sbjct: 178 EMDSQRAIK---VLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFG 234 Query: 421 KFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K+G +V+ I+ D T R RG F+ ++ + E Sbjct: 235 KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 269
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 53.9 bits (128), Expect = 3e-07 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 12/161 (7%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 + +F+ L + + + +G I+ ++ + + K G+GF+ + +R Sbjct: 96 SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAER 153 Query: 262 VIE--DNHVIDGKQVEI------KRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFF 417 I+ + +++G++V + K + A K+F +++ + D+ KD F Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN--VYIKNFGEDMDDERLKDLF 211 Query: 418 SKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 KFG + +++ D S +S+GFGF+ F DA+K VDE+ Sbjct: 212 GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251 Score = 53.1 bits (126), Expect = 5e-07 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 20/149 (13%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQV----- 300 K+ FGK+G + +M + + K +GFGF+++ + +++ + ++GKQ+ Sbjct: 208 KDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Query: 301 --------EIKRTIPKGAAP-LKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEII 453 E+KRT + + ++ ++V L + D+ + FS FG + +++ Sbjct: 267 QKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM 326 Query: 454 CDHSTNRSRGFGFIVF----DAEKTVDEL 528 + RS+GFGF+ F +A K V E+ Sbjct: 327 MEGG--RSKGFGFVCFSSPEEATKAVTEM 353 Score = 47.8 bits (112), Expect = 2e-05 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 2/146 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + E F G I+ I ++ T + ++ + + ++ Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70 Query: 271 DNH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + VI GK V I + + L+ IFV L ++ + D S FG ++ Sbjct: 71 TMNFDVIKGKPVRIMWS--QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSC 128 Query: 445 EIICDHSTNRSRGFGFIVFDAEKTVD 522 ++CD N S+G+GF+ F+ + + Sbjct: 129 NVVCDE--NGSKGYGFVHFETHEAAE 152
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 53.9 bits (128), Expect = 3e-07 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 1/150 (0%) Frame = +1 Query: 79 GASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD 258 GA K+FIG L +T + F KYG +V+ ++K +GF+ Sbjct: 3 GAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGR 54 Query: 259 RVIEDNHVIDGKQVEIKRTIPKGA-APLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKV 435 I++ + + IK K AP + T KIFVG L R E ++ F K+G V Sbjct: 55 DAIQNLNGYTLNEFAIKVEAAKSRRAP--NTPTTKIFVGNLTDKTRAPEVRELFQKYGTV 112 Query: 436 VEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 VE +I+ R +GF+ D V + Sbjct: 113 VECDIV--------RNYGFVHLDCVGDVQD 134 Score = 35.0 bits (79), Expect = 0.13 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 + + ++ K+F+G L+ +T +E F KYG +V+ I+ R +GF+ Sbjct: 74 AAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVH 125 Query: 235 YSDPAIVDRVIED--NHVIDGK----QVEIKRTIPK 324 V I++ V+DG+ QV R PK Sbjct: 126 LDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPK 161
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 53.5 bits (127), Expect = 3e-07 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 22/157 (14%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +F+G L +E F + G + ++ E+ ++ RGFG++T+S V R +++ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 277 HVIDGKQVEI--------KRTIPKG-----AAPLKDFKTKK---------IFVGGLPTAL 390 +G ++ + +T KG P K+ K KK + + L Sbjct: 65 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKC 124 Query: 391 RDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 +D+ K F++FG V+E I + RGFGF+ F Sbjct: 125 SEDDLKTVFAQFGAVLEVN-IPRKPDGKMRGFGFVQF 160 Score = 40.4 bits (93), Expect = 0.003 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 +FVG LP + R ++ ++ FS+ G V + ++ + + RGFG++ F D ++ + E+ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 53.5 bits (127), Expect = 3e-07 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Frame = +1 Query: 253 VDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFK-TKKIFVGGLPTALRDDEFKDFFSKFG 429 VD+V+ ++ K ++ PK A +K + KKIFVGGL +++ +++F FG Sbjct: 142 VDKVMIKKNINSWKVID-----PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFG 196 Query: 430 KVVEHEIICDHSTNRSRGFGFIVFDAEK 513 +V E+ D+ TN+ RGF FI F+ E+ Sbjct: 197 EVESIELPMDNKTNKRRGFCFITFNQEE 224 Score = 46.6 bits (109), Expect = 4e-05 Identities = 21/49 (42%), Positives = 30/49 (61%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 K+F+GGLS T +EYFG +GE+ + + T K RGF FIT++ Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFN 221
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 52.4 bits (124), Expect = 8e-07 Identities = 36/172 (20%), Positives = 83/172 (48%), Gaps = 20/172 (11%) Frame = +1 Query: 70 QQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPA 249 ++ A +++ ++ +T+ F+E F K+G IV A + K+ K +GFGF+ Y Sbjct: 211 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHE 269 Query: 250 IVDRVIE--DNHVIDGKQVEIKRTIPKG--------------AAPLKDFKTKKIFVGGLP 381 + +E ++ ++G+++ + R K + ++ +FV L Sbjct: 270 DAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLD 329 Query: 382 TALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 ++ D++ ++ F+ +G + +++ + +S+GFGF+ F +A K + E Sbjct: 330 DSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITE 380 Score = 49.3 bits (116), Expect = 7e-06 Identities = 34/157 (21%), Positives = 67/157 (42%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 +G Q S+A +++G L S + F G + + ++ T+ G+ ++ Sbjct: 25 TGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVN 84 Query: 235 YSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDF 414 ++D + IE + K + + L+ + IF+ L + + D Sbjct: 85 FNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDT 144 Query: 415 FSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 FS FG ++ +I D + +S+GFGF+ F+ E E Sbjct: 145 FSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKE 180 Score = 35.0 bits (79), Expect = 0.13 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVI--E 270 +F+ L +E F YG I A +M+ + K +GFGF+ +S P + I + Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENG-KSKGFGFVCFSTPEEATKAITEK 381 Query: 271 DNHVIDGKQVEI 306 + ++ GK + + Sbjct: 382 NQQIVAGKPLYV 393
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/153 (20%), Positives = 70/153 (45%), Gaps = 6/153 (3%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 + +FI L R + F +G I+ + + +G+GF+ + + Sbjct: 87 SGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHFETEEAANT 145 Query: 262 VIE--DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIF----VGGLPTALRDDEFKDFFSK 423 I+ + +++GK+V + + IP+ + + K+F V D++ K+FF Sbjct: 146 SIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEP 205 Query: 424 FGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 +GK+ ++++ +S+GFGF+ F+ + + Sbjct: 206 YGKITSYKVM-SKEDGKSKGFGFVAFETTEAAE 237 Score = 51.6 bits (122), Expect = 1e-06 Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 17/139 (12%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE---DNHVIDGKQVEIKR 312 KE+F YG+I +M + K +GFGF+ + + ++ + +GK + + R Sbjct: 200 KEFFEPYGKITSYKVMS-KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258 Query: 313 TIPKGAAP------LKDFKTKK--------IFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 K ++ K K+ ++V L + DD + FS +G + ++ Sbjct: 259 AQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKV 318 Query: 451 ICDHSTNRSRGFGFIVFDA 507 + D RS+GFGF+ F+A Sbjct: 319 MTDEE-GRSKGFGFVCFNA 336
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 52.0 bits (123), Expect = 1e-06 Identities = 30/136 (22%), Positives = 71/136 (52%), Gaps = 8/136 (5%) Frame = +1 Query: 112 LSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH---- 279 +S+ TS +E F +G+I D +++++HT++ +G F+ ++ + R +E+ H Sbjct: 32 ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCL 91 Query: 280 -VIDGKQVEIKRTIPKGAAPLKDFKTK---KIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 D K +++ + + +D + + +IFV +P + +++ ++ F +G + Sbjct: 92 GPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCS 150 Query: 448 IICDHSTNRSRGFGFI 495 II + T S+G G++ Sbjct: 151 IIKNKVTGESKGLGYV 166 Score = 31.2 bits (69), Expect = 1.9 Identities = 17/73 (23%), Positives = 36/73 (49%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 SG + + ++F+ + + + +E F YG+I I+K + T + +G G++ Sbjct: 109 SGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVR 167 Query: 235 YSDPAIVDRVIED 273 Y P+ + IE+ Sbjct: 168 YLKPSQAAQAIEN 180
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 51.2 bits (121), Expect = 2e-06 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 7/151 (4%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +++G L + + K+YF G I + IM +++ K + F+ Y + ++ Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQ-- 132 Query: 277 HVIDGKQVE---IKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 ++GKQ+E +K + T +FVG L + D+ ++ F F + Sbjct: 133 -TLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 191 Query: 448 IICDHSTNRSRGFGFIVF----DAEKTVDEL 528 ++ D T SRG+GF+ F DA+ +D + Sbjct: 192 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222 Score = 29.3 bits (64), Expect = 7.1 Identities = 12/60 (20%), Positives = 27/60 (45%) Frame = +1 Query: 61 EMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 + +Q +F+G L+ T + F + + +M + T RG+GF++++ Sbjct: 151 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFT 210
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/136 (21%), Positives = 70/136 (51%), Gaps = 8/136 (5%) Frame = +1 Query: 112 LSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH---- 279 +S+ T +E F +G+I D +++++HT++ +G F+ ++ + R +E+ H Sbjct: 32 ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91 Query: 280 -VIDGKQVEIKRTIPKGAAPLKDFKTK---KIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 D K +++ + + +D + + +IFV +P + +++ ++ F +G + Sbjct: 92 GPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCS 150 Query: 448 IICDHSTNRSRGFGFI 495 II + T S+G G++ Sbjct: 151 IIKNKVTGESKGLGYV 166 Score = 31.2 bits (69), Expect = 1.9 Identities = 17/73 (23%), Positives = 36/73 (49%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 SG + + ++F+ + + + +E F YG+I I+K + T + +G G++ Sbjct: 109 SGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVR 167 Query: 235 YSDPAIVDRVIED 273 Y P+ + IE+ Sbjct: 168 YLKPSQAAQAIEN 180
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 51.2 bits (121), Expect = 2e-06 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 5/155 (3%) Frame = +1 Query: 52 GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFG-- 225 G+ + Q A KMF+G + R S +E F +YG + + I+++R P+ G Sbjct: 3 GTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCC 62 Query: 226 FIT-YSDPAIVD--RVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRD 396 F+T Y+ A ++ + + V+ G I+ P + + +K+F+G + + Sbjct: 63 FVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK-PADSEKNNAVEDRKLFIGMISKKCTE 121 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 ++ + FS FG++ E I+ SRG F+ F Sbjct: 122 NDIRVMFSSFGQIEECRIL-RGPDGLSRGCAFVTF 155 Score = 38.9 bits (89), Expect = 0.009 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 +F+ LP D + F FG VV ++ D TN S+ FGF+ +D Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 450 Score = 31.2 bits (69), Expect = 1.9 Identities = 22/113 (19%), Positives = 48/113 (42%) Frame = +1 Query: 25 PSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHT 204 P + P + ++ + K+FIG +S++ + + F +G+I + I++ Sbjct: 86 PGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG 145 Query: 205 QKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKI 363 RG F+T++ + I+ H + + K A KD + K++ Sbjct: 146 LS-RGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRM 197
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 2/142 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +++G L + G + F ++ + + K+ + + +G+ + + IE Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83 Query: 271 --DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 +N +++GK + + ++ A + +FV LP ++ + +D F KFG +V Sbjct: 84 KKNNSLLNGKMIRVMWSVR--APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSC 141 Query: 445 EIICDHSTNRSRGFGFIVFDAE 510 + + +SRG+GF+ F+ E Sbjct: 142 K-VATLEDGKSRGYGFVQFEQE 162 Score = 48.1 bits (113), Expect = 1e-05 Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 2/138 (1%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 +F+ L + ++ F K+G IV + K RG+GF+ + I+ Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 ++ ++ K++ + + + K + K +++ L + +D ++ F++FGK+V I Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232 Query: 451 ICDHSTNRSRGFGFIVFD 504 D + RG+ F+ FD Sbjct: 233 AKDEN-RLCRGYAFVNFD 249
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 50.8 bits (120), Expect = 2e-06 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 5/155 (3%) Frame = +1 Query: 52 GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFG-- 225 G+ + Q A KMF+G + R S +E F +YG + + ++++R P+ G Sbjct: 3 GTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCC 62 Query: 226 FIT-YSDPAIVD--RVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRD 396 F+T Y+ A ++ + + V+ G I+ P + + +K+F+G + + Sbjct: 63 FVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK-PADSEKNNAVEDRKLFIGMISKKCTE 121 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 ++ + FS FG++ E I+ SRG F+ F Sbjct: 122 NDIRVMFSSFGQIEECRIL-RGPDGLSRGCAFVTF 155 Score = 38.9 bits (89), Expect = 0.009 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 +F+ LP D + F FG VV ++ D TN S+ FGF+ +D Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 450 Score = 32.7 bits (73), Expect = 0.64 Identities = 23/113 (20%), Positives = 49/113 (43%) Frame = +1 Query: 25 PSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHT 204 P + P + ++ + K+FIG +S++ + + F +G+I + I++ Sbjct: 86 PGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG 145 Query: 205 QKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKI 363 RG F+T++ A+ I+ H + + K A KD + K++ Sbjct: 146 LS-RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRM 197
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 50.4 bits (119), Expect = 3e-06 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 2/126 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+F+G LS T+ + F +YG+I + I+K FGF+ + D I++ Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVK--------NFGFVHMDSKSEADEAIQN 54 Query: 274 NH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H +++G + ++ + KG K + K+ VG + ++ + E + F ++G VVE + Sbjct: 55 LHHYMLNGMAMNVE--MSKG----KPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECD 108 Query: 448 IICDHS 465 I+ D++ Sbjct: 109 IVKDYA 114 Score = 37.7 bits (86), Expect = 0.020 Identities = 19/56 (33%), Positives = 30/56 (53%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 KIFVG L +E + FS++GK+ E +I+ + FGF+ D++ DE Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADE 50
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 50.4 bits (119), Expect = 3e-06 Identities = 37/159 (23%), Positives = 69/159 (43%) Frame = +1 Query: 16 PLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKE 195 P PS P + S D S ++I GL T+ + YG+IV + + Sbjct: 33 PPSPSNSTPNS--SSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD 90 Query: 196 RHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGG 375 + T K +G+GF+ + P+ + + G Q ++ A ++ +++ Sbjct: 91 KTTNKCKGYGFVDFDSPSAAQKAVTALKA-SGVQAQM--------AKQQEQDPTNLYISN 141 Query: 376 LPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGF 492 LP ++ + E + FG+V+ I+ D ++ SRG GF Sbjct: 142 LPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGF 179 Score = 39.7 bits (91), Expect = 0.005 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 +++ GL D + +GK+V + I D +TN+ +G+GF+ FD A+K V L Sbjct: 58 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 49.3 bits (116), Expect = 7e-06 Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIV---- 255 A +F L+ + +++F G++ D I+ +R++++ +G ++ + + V Sbjct: 165 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 224 Query: 256 ----DRVIEDNHVIDGKQVEIKR------TIPKG-AAPLKDFKTKKIFVGGLPTALRDDE 402 R++ ++ Q E R + KG P++ ++VG L + +D Sbjct: 225 GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMR------LYVGSLHFNITEDM 278 Query: 403 FKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 + F FGK+ ++ D T RS+G+GFI F Sbjct: 279 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF 311 Score = 43.1 bits (100), Expect = 5e-04 Identities = 19/67 (28%), Positives = 36/67 (53%) Frame = +1 Query: 70 QQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPA 249 Q+ ++++G L + + F +G+I + V+MK+ T + +G+GFIT+SD Sbjct: 256 QKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 315 Query: 250 IVDRVIE 270 R +E Sbjct: 316 CARRALE 322
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 49.3 bits (116), Expect = 7e-06 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = +1 Query: 334 PLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 P D + +FVG +P +++ KD FS+ G VV ++ D T + +G+GF + ++ Sbjct: 9 PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 514 T 516 T Sbjct: 69 T 69 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 S +F+G + + + K+ F + G +V ++ +R T KP+G+GF Y D Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 49.3 bits (116), Expect = 7e-06 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = +1 Query: 334 PLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 P D + +FVG +P +++ KD FS+ G VV ++ D T + +G+GF + ++ Sbjct: 9 PAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 514 T 516 T Sbjct: 69 T 69 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 S +F+G + + + K+ F + G +V ++ +R T KP+G+GF Y D Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = +1 Query: 334 PLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 P D + +FVG +P +++ KD FS+ G VV ++ D T + +G+GF + ++ Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 514 T 516 T Sbjct: 69 T 69 Score = 39.7 bits (91), Expect = 0.005 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 S +F+G + + + K+ F + G +V ++ +R T KP+G+GF Y D Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 48.5 bits (114), Expect = 1e-05 Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 2/153 (1%) Frame = +1 Query: 70 QQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPA 249 ++D A +++G L + + E + G +V+ I ++R GFGF + Sbjct: 4 REDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQ 63 Query: 250 IVDRVIEDNHVID--GKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSK 423 V+ + + + GK + + R + +FVG L + + D FS Sbjct: 64 DVEYACQILNQVKLFGKPIRVNRASQDRG--VNTLIGANLFVGNLDPLVDERVLYDTFSA 121 Query: 424 FGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 G++V+ + RS+G+GF+ +D+ +T D Sbjct: 122 LGQLVKAPQVARDENGRSKGYGFVSYDSFETAD 154 Score = 32.0 bits (71), Expect = 1.1 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A +F+G L + F G++V A + + +G+GF++Y D IE Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158 Query: 271 --DNHVIDGKQVEI 306 +N + K + + Sbjct: 159 AMNNQFLMNKPITV 172
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 + + LS + T +E F K + + + K +G+ FI ++ + Sbjct: 487 LVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 542 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 + I+G+ + ++ P+G+ + +K +FV GL ++ K+ F V I Sbjct: 543 NKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE---SFDGSVRARI 599 Query: 451 ICDHSTNRSRGFGFIVFDAEK 513 + D T S+GFGF+ F++E+ Sbjct: 600 VTDRETGSSKGFGFVDFNSEE 620 Score = 40.0 bits (92), Expect = 0.004 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 +A +F+G L+ S K D ++ R R FG++ + +++ Sbjct: 304 TAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVR-IGMTRKFGYVDFESAEDLEKA 362 Query: 265 IEDNHVIDGKQV---EIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKV 435 +E + G +V EIK PKG K+ + + LP + DE K+ F Sbjct: 363 LE----LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAA-- 416 Query: 436 VEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 EI +S+G +I F DAEKT +E Sbjct: 417 ---EIRLVSKDGKSKGIAYIEFKTEADAEKTFEE 447
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = +1 Query: 334 PLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 P D + +FVG +P +++ KD FS+ G VV ++ D T + +G+GF + ++ Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 514 T 516 T Sbjct: 69 T 69 Score = 39.7 bits (91), Expect = 0.005 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 S +F+G + + + K+ F + G +V ++ +R T KP+G+GF Y D Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = +1 Query: 334 PLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 P D + +FVG +P +++ KD FS+ G VV ++ D T + +G+GF + ++ Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 514 T 516 T Sbjct: 69 T 69 Score = 39.7 bits (91), Expect = 0.005 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 S +F+G + + + K+ F + G +V ++ +R T KP+G+GF Y D Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = +1 Query: 334 PLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 P D + +FVG +P +++ KD FS+ G VV ++ D T + +G+GF + ++ Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68 Query: 514 T 516 T Sbjct: 69 T 69 Score = 39.7 bits (91), Expect = 0.005 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 S +F+G + + + K+ F + G +V ++ +R T KP+G+GF Y D Sbjct: 14 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 22/157 (14%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +F+G L +E F + G + ++ E+ ++ RGFG++T+S V R +++ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 277 HVIDGKQVEI-------------KRTIPKGAAPLKDFKTKK---------IFVGGLPTAL 390 +G ++++ R +P K+ K KK + + L Sbjct: 65 TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKC 124 Query: 391 RDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 +D+ K F+ +G V+E I + RGF F+ F Sbjct: 125 SEDDLKAVFTHYGTVLEVN-IPKKPDGKMRGFAFVQF 160 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 +FVG LP + R D+ ++ FS+ G V + ++ + + RGFG++ F D ++ + E+ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 + + LS + T +E F K + + + K +G+ FI ++ + Sbjct: 489 LVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 544 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 + I+G+ + ++ P+G+ + +K +FV GL ++ K+ F V I Sbjct: 545 NKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE---SFDGSVRARI 601 Query: 451 ICDHSTNRSRGFGFIVFDAEK 513 + D T S+GFGF+ F++E+ Sbjct: 602 VTDRETGSSKGFGFVDFNSEE 622 Score = 40.0 bits (92), Expect = 0.004 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 +A +F+G L+ S K D ++ R R FG++ + +++ Sbjct: 306 TAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVR-IGMTRKFGYVDFESAEDLEKA 364 Query: 265 IEDNHVIDGKQV---EIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKV 435 +E + G +V EIK PKG K+ + + LP + DE K+ F Sbjct: 365 LE----LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAA-- 418 Query: 436 VEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 EI +S+G +I F DAEKT +E Sbjct: 419 ---EIRLVSKDGKSKGIAYIEFKTEADAEKTFEE 449
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 + + LS + T +E F K + + + K +G+ FI ++ + Sbjct: 488 LVLSNLSYSATEETLQEVFEK----ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 543 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 + I+G+ + ++ P+G+ + +K +FV GL ++ K+ F V I Sbjct: 544 NKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKE---SFDGSVRARI 600 Query: 451 ICDHSTNRSRGFGFIVFDAEK 513 + D T S+GFGF+ F++E+ Sbjct: 601 VTDRETGSSKGFGFVDFNSEE 621 Score = 40.0 bits (92), Expect = 0.004 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 7/154 (4%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 +A +F+G L+ S K D ++ R R FG++ + +++ Sbjct: 305 TAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVR-IGMTRKFGYVDFESAEDLEKA 363 Query: 265 IEDNHVIDGKQV---EIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKV 435 +E + G +V EIK PKG K+ + + LP + DE K+ F Sbjct: 364 LE----LTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAA-- 417 Query: 436 VEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 EI +S+G +I F DAEKT +E Sbjct: 418 ---EIRLVSKDGKSKGIAYIEFKTEADAEKTFEE 448
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = +1 Query: 103 IGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE--DN 276 + L+ +TS T + F KYG + D I ++R+T++ RGF F+ + D + ++ D Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77 Query: 277 HVIDGKQVEIK 309 V+DG+++ ++ Sbjct: 78 AVLDGRELRVQ 88 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = +1 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 D + F K+G+V + I D T SRGF F+ F DAE +D + Sbjct: 28 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = +1 Query: 103 IGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE--DN 276 + L+ +TS T + F KYG + D I ++R+T++ RGF F+ + D + ++ D Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 277 HVIDGKQVEIK 309 V+DG+++ ++ Sbjct: 77 AVLDGRELRVQ 87 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = +1 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 D + F K+G+V + I D T SRGF F+ F DAE +D + Sbjct: 27 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = +1 Query: 103 IGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE--DN 276 + L+ +TS T + F KYG + D I ++R+T++ RGF F+ + D + ++ D Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 277 HVIDGKQVEIK 309 V+DG+++ ++ Sbjct: 77 AVLDGRELRVQ 87 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = +1 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 D + F K+G+V + I D T SRGF F+ F DAE +D + Sbjct: 27 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = +1 Query: 103 IGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE--DN 276 + L+ +TS T + F KYG + D I ++R+T++ RGF F+ + D + ++ D Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 277 HVIDGKQVEIK 309 V+DG+++ ++ Sbjct: 77 AVLDGRELRVQ 87 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = +1 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 D + F K+G+V + I D T SRGF F+ F DAE +D + Sbjct: 27 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = +1 Query: 103 IGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE--DN 276 + L+ +TS T + F KYG + D I ++R+T++ RGF F+ + D + ++ D Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 277 HVIDGKQVEIK 309 V+DG+++ ++ Sbjct: 77 AVLDGRELRVQ 87 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = +1 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 D + F K+G+V + I D T SRGF F+ F DAE +D + Sbjct: 27 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIG L R+ + + F +YG++++ I+K +GF+ D + I + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRN 54 Query: 274 NH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H + G + ++ + K A + K+ VG + + E + F ++G V+E + Sbjct: 55 LHHYKLHGVNINVEASKNKSKA------STKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 448 IICDHS 465 I+ D++ Sbjct: 109 IVKDYA 114 Score = 35.0 bits (79), Expect = 0.13 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K+F+G LP + E + F ++GKV+E +II + +GF+ + +KT E Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIE-DKTAAE 49
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIG L R+ + + F +YG++++ I+K +GF+ D + I + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRN 54 Query: 274 NH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H + G + ++ + K A + K+ VG + + E + F ++G V+E + Sbjct: 55 LHHYKLHGVNINVEASKNKSKA------STKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 448 IICDHS 465 I+ D++ Sbjct: 109 IVKDYA 114 Score = 35.0 bits (79), Expect = 0.13 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K+F+G LP + E + F ++GKV+E +II + +GF+ + +KT E Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIE-DKTAAE 49
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIG L R+ + + F +YG++++ I+K +GF+ D + I + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRN 54 Query: 274 NH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H + G + ++ + K A + K+ VG + + E + F ++G V+E + Sbjct: 55 LHHYKLHGVNINVEASKNKSKA------STKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 448 IICDHS 465 I+ D++ Sbjct: 109 IVKDYA 114 Score = 35.0 bits (79), Expect = 0.13 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K+F+G LP + E + F ++GKV+E +II + +GF+ + +KT E Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIE-DKTAAE 49
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIG L R+ + + F +YG++++ I+K +GF+ D + I + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRN 54 Query: 274 NH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H + G + ++ + K A + K+ VG + + E + F ++G V+E + Sbjct: 55 LHHYKLHGVNINVEASKNKSKA------STKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 448 IICDHS 465 I+ D++ Sbjct: 109 IVKDYA 114 Score = 35.0 bits (79), Expect = 0.13 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K+F+G LP + E + F ++GKV+E +II + +GF+ + +KT E Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIE-DKTAAE 49
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIG L R+ + + F +YG++++ I+K +GF+ D + I + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRN 54 Query: 274 NH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H + G + ++ + K A + K+ VG + + E + F ++G V+E + Sbjct: 55 LHHYKLHGVNINVEASKNKSKA------STKLHVGNISPTCTNQELRAKFEEYGPVIECD 108 Query: 448 IICDHS 465 I+ D++ Sbjct: 109 IVKDYA 114 Score = 35.0 bits (79), Expect = 0.13 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K+F+G LP + E + F ++GKV+E +II + +GF+ + +KT E Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIE-DKTAAE 49
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%) Frame = +1 Query: 268 EDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 ED + + + + P+ A + +FV G+ + +++DE + FSKFG V Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131 Query: 448 IICDHSTNRSRGFGFIVF----DAEKTVDEL 528 I+ + T SRGFGF+ F +A +D L Sbjct: 132 IMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Score = 38.9 bits (89), Expect = 0.009 Identities = 15/48 (31%), Positives = 29/48 (60%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 +F+ G++ + ++ F K+G + IM+E T+ RGFGF+++S Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFS 150
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 47.0 bits (110), Expect = 3e-05 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 4/143 (2%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQ--KPRGFGFITYSDPAIVDRVIE 270 + + LS + T +E F K A +K Q K +G+ FI ++ + Sbjct: 487 LVLSNLSYSATEETLQEVFEK------ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALN 540 Query: 271 --DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 + I+G+ + ++ P+G+ + +K +FV GL ++ K+ F V Sbjct: 541 SCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGS---VRA 597 Query: 445 EIICDHSTNRSRGFGFIVFDAEK 513 I+ D T S+GFGF+ F++E+ Sbjct: 598 RIVTDRETGSSKGFGFVDFNSEE 620 Score = 37.4 bits (85), Expect = 0.026 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 7/162 (4%) Frame = +1 Query: 61 EMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 +++ + + +FIG L+ S+ K + D ++ R T R FG++ + Sbjct: 297 KVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVR-TGTNRKFGYVDFE 355 Query: 241 DPAIVDRVIEDNHVIDGKQV---EIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKD 411 +++ +E + G +V EIK PKG K + + L + +DE K+ Sbjct: 356 SAEDLEKALE----LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKE 411 Query: 412 FFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 F EI +S+G +I F DAEK ++E Sbjct: 412 VFED-----ALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE 448
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 47.0 bits (110), Expect = 3e-05 Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 17/175 (9%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIM-----KERHTQKPRG 219 S E DG + + +F+ L+ T+ E F + V A + K + G Sbjct: 601 SSEATAIDGPTVS-IFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMG 659 Query: 220 FGFITYSDPAIVDRVIE--DNHVIDGKQVEIK-----RTIPKGAAPLKDFKTKKIFVGGL 378 FGFI + VI D VIDG ++++K ++PK + K + KI V L Sbjct: 660 FGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISGKIIVKNL 719 Query: 379 P-TALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 P A R D F + FS FG++ + + +RGF F+ F +AE +D+L Sbjct: 720 PFEATRKDVF-ELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAMDQL 772 Score = 40.0 bits (92), Expect = 0.004 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%) Frame = +1 Query: 10 KRPLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIM 189 + P +PQ + E + ++F+ + + FK+ F YGE+ + + Sbjct: 274 EEPAEQEVPQEDEVSAEEAALTKIRATGRLFLRNILYDATEEDFKQLFSPYGELEEVHVA 333 Query: 190 KERHTQKPRGFGFITYSDPA-IVDRVIE-DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKI 363 + T + +GF ++ + DP + IE D + G+ + I K L +F K + Sbjct: 334 VDTRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGRLLHILPADAKKTHRLDEFDLKNL 393 Score = 37.4 bits (85), Expect = 0.026 Identities = 17/58 (29%), Positives = 33/58 (56%) Frame = +1 Query: 328 AAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 AA K T ++F+ + +++FK FS +G++ E + D T +S+GF +++F Sbjct: 292 AALTKIRATGRLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLF 349
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 46.6 bits (109), Expect = 4e-05 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIG L R+ + + F +YG++++ I+K +GF+ D + I + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRN 54 Query: 274 NH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H + G + ++ A+ K + K+ VG + + E + F ++G V+E + Sbjct: 55 LHHYKLHGVNINVE------ASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECD 108 Query: 448 IICDHS 465 I+ D++ Sbjct: 109 IVKDYA 114 Score = 35.0 bits (79), Expect = 0.13 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K+F+G LP + E + F ++GKV+E +II + +GF+ + +KT E Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIE-DKTAAE 49
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 46.6 bits (109), Expect = 4e-05 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K +FV +P + D++ DFFS F + +H ++ + RSRGFGF+ F E E Sbjct: 26 KTLFVRSIPQDVTDEQLADFFSNFAPI-KHAVVVKDTNKRSRGFGFVSFAVEDDTKE 81 Score = 38.1 bits (87), Expect = 0.015 Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 55/183 (30%) Frame = +1 Query: 142 KEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEIKRT 315 K+ FG+YG +V+A I ++R K GF F+T + +E+ IDG++V + Sbjct: 165 KKIFGRYGTVVEATIPRKRDG-KLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFA 223 Query: 316 IPKG---------------------------------------------AAPLKDFKTK- 357 + K A+ K+ K K Sbjct: 224 VQKNRWEDYKKAQPEMNDKDDNESGNEDAEENHDDEEDENEEEDRQVDQASKNKESKRKA 283 Query: 358 -------KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKT 516 +FV +P ++ FSKFG V + D ST ++G F+ F + T Sbjct: 284 QNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYT 343 Query: 517 VDE 525 +E Sbjct: 344 YNE 346
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 46.6 bits (109), Expect = 4e-05 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 8/144 (5%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITY----SDPAIVDRV 264 +FI L E F +G I+ + + T + +G+GF+ + S A +D++ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 265 ----IEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGK 432 + D V G + + P F ++V LP + +DE + F KFG Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTN--VYVKNLPKEIGEDELRKTFGKFGV 254 Query: 433 VVEHEIICDHSTNRSRGFGFIVFD 504 + ++ D S N SR FGF+ F+ Sbjct: 255 ISSAVVMRDQSGN-SRCFGFVNFE 277 Score = 40.0 bits (92), Expect = 0.004 Identities = 27/142 (19%), Positives = 65/142 (45%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 + ++ G L + + + F +V + ++++ ++ G+ +I +S+P R +E Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN-RRSLGYAYINFSNPNDAYRAME 107 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 + I+ + + IF+ L ++ + + FS FG ++ ++ Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167 Query: 451 ICDHSTNRSRGFGFIVFDAEKT 516 D T RS+G+GF+ F+ E++ Sbjct: 168 AMD-VTGRSKGYGFVQFEKEES 188 Score = 35.8 bits (81), Expect = 0.075 Identities = 19/73 (26%), Positives = 34/73 (46%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 + A +++ L KE F +YG + + +M RGFGF+ YS+P R Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNPEEALR 387 Query: 262 VIEDNHVIDGKQV 300 + + ++GK + Sbjct: 388 ALSE---MNGKMI 397
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 46.6 bits (109), Expect = 4e-05 Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 K+FIG L R+ + + F +YG++++ I+K +GF+ D + I + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK--------NYGFVHIEDKTAAEDAIRN 54 Query: 274 NH--VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 H + G + ++ A+ K + K+ VG + + E + F ++G V+E + Sbjct: 55 LHHYKLHGVNINVE------ASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECD 108 Query: 448 IICDHS 465 I+ D++ Sbjct: 109 IVKDYA 114 Score = 35.0 bits (79), Expect = 0.13 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 K+F+G LP + E + F ++GKV+E +II + +GF+ + +KT E Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIE-DKTAAE 49
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 46.2 bits (108), Expect = 6e-05 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 12/150 (8%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 +F+ L+ + KE FG GE+V+A I+ + RG G + ++ V I Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKGHH--RGMGTVEFTKNESVQDAISKF 181 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTK----------KIFVGGLPTALRDDEFKDFFS 420 D + +++ +++ P A K+F K ++F+ LP ++ KD F Sbjct: 182 DGALFMDRKLMVRQDNPPPEAA-KEFSKKATREEIDNGFEVFIINLPYSMNWQSLKDMFK 240 Query: 421 KFGKVVEHEIICDHSTNRSRGFGFIVFDAE 510 + G V+ ++ D + SRGFG +++ E Sbjct: 241 ECGHVLRADVELDFN-GFSRGFGSVIYPTE 269 Score = 30.4 bits (67), Expect = 3.2 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 IFV L ++ K+ F G+VVE +II S RG G + F ++V + Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIIT--SKGHHRGMGTVEFTKNESVQD 176
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 46.2 bits (108), Expect = 6e-05 Identities = 20/59 (33%), Positives = 34/59 (57%) Frame = +1 Query: 346 FKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 + + K+++GGL + KD FS F V E ++ + T RSRG+GF+ F +E + + Sbjct: 28 YMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86 Score = 40.4 bits (93), Expect = 0.003 Identities = 16/50 (32%), Positives = 30/50 (60%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITY 237 + K++IGGLS T + K+ F + + +A +M + T + RG+GF+ + Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 46.2 bits (108), Expect = 6e-05 Identities = 30/155 (19%), Positives = 65/155 (41%), Gaps = 19/155 (12%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVD-----------------AVIMKERHTQKPRGFG 225 +F+G L + K +F +YG++ A I ++ H + Sbjct: 191 VFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSINA 250 Query: 226 FITYSDPAIVDRVIEDN--HVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDD 399 ++ + D + + ++ N + +G ++ + A+ + +FVG LP + D Sbjct: 251 YVVFKDESAAAKALQRNGAQIAEGFRIRVDL-----ASETASRDKRSVFVGNLPYKIEDS 305 Query: 400 EFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 ++ F G +V I+ + T RGFG+++F+ Sbjct: 306 ALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 340 Score = 34.7 bits (78), Expect = 0.17 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-D 273 +F+G L + +E+F G IV I++ T RGFG++ + + V ++ + Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 352 Query: 274 NHVIDGKQVEIKRTIPK 324 N + G+++ + R++ K Sbjct: 353 NSELMGRKLRVMRSVNK 369
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%) Frame = +1 Query: 52 GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFI 231 GSG S ++++G LS + F + G++V+A ++ +R + + +GFGF+ Sbjct: 244 GSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 303 Query: 232 TYSDPAIVDRVIE--DNHVIDGKQVEI 306 T S V + I + +DG+Q+ + Sbjct: 304 TLSSSQEVQKAINSLNGADLDGRQIRV 330 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/56 (33%), Positives = 34/56 (60%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +++VG L + D ++ F++ GKVVE +I D + RS+GFGF+ + + V + Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQK 313 Score = 38.9 bits (89), Expect = 0.009 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 K+FVG L + + F G V E+I D T RSRGFGF+ V+ Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154 Score = 36.6 bits (83), Expect = 0.044 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 K+F+G LS + F G + ++ ++ T + RGFGF+T S A V+ + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 271 -DNHVIDGKQVEIKRTIP 321 + + +G+ + + P Sbjct: 160 FNGYEFEGRPLRVNAGPP 177
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 45.8 bits (107), Expect = 7e-05 Identities = 22/67 (32%), Positives = 38/67 (56%) Frame = +1 Query: 328 AAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDA 507 A P + +IFVGG PT+ + E ++ F KF V + +++ +S+G+GFI F+ Sbjct: 58 APPTYELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMV-KSLDGQSKGYGFITFET 116 Query: 508 EKTVDEL 528 E +E+ Sbjct: 117 EDQAEEI 123 Score = 35.4 bits (80), Expect = 0.098 Identities = 23/109 (21%), Positives = 51/109 (46%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 ++F+GG T+ +E+F K+ + D ++K Q +G+GFIT+ Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQS-KGYGFITFE----------- 115 Query: 274 NHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFS 420 + + EI++ PK +F+++K+ +G + + F+ ++ Sbjct: 116 ---TEDQAEEIRKLTPKQL----EFRSRKLNLGPAIRKINSNSFQPSYA 157
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 45.8 bits (107), Expect = 7e-05 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 + + LS + T +E F K + + + K +G+ FI ++ + Sbjct: 490 LVLSNLSYSATEETLQEVFEK----ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSC 545 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 + I+G+ + ++ P+G+ + +K +FV GL ++ K+ F V I Sbjct: 546 NKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARI 602 Query: 451 ICDHSTNRSRGFGFIVFDAEK 513 + D T S+GFGF+ F++E+ Sbjct: 603 VTDRETGSSKGFGFVDFNSEE 623 Score = 38.1 bits (87), Expect = 0.015 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 7/150 (4%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +FIG L+ S+ K + D + R T R FG++ + +++ +E Sbjct: 312 LFIGNLNPNKSVAELKVAISELFAKNDLAAVDVR-TGTNRKFGYVDFESAEDLEKALE-- 368 Query: 277 HVIDGKQV---EIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 + G +V EIK PKG K + + L + +DE K+ F VE Sbjct: 369 --LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE---DAVEIR 423 Query: 448 IICDHSTNRSRGFGFIVF----DAEKTVDE 525 ++ RS+G +I F DAEK ++E Sbjct: 424 LV--SQDGRSKGIAYIEFKSEADAEKNLEE 451
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 45.8 bits (107), Expect = 7e-05 Identities = 20/76 (26%), Positives = 44/76 (57%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +F+GG+ + + + YF +YG + + I+ +R T +G+GF+++ D V +++E Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVESQ 96 Query: 277 HVIDGKQVEIKRTIPK 324 + GK++++ I K Sbjct: 97 ISVHGKRLKLGPAIRK 112 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVD 522 +FVGG+ + + E + +F ++G V E +II D T S+G+GF+ F D +K V+ Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVE 94
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 45.8 bits (107), Expect = 7e-05 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Frame = +1 Query: 94 KMFIGGLS-RQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 K+F+G + T+ F YG ++ +MK+ F F+ + A R IE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGAVRAIE 53 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 H G ++ R + + + T KIFVG + A E + F + G+V+E ++ Sbjct: 54 ALH---GHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110 Query: 451 ICDHS 465 + D++ Sbjct: 111 VKDYA 115
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 45.8 bits (107), Expect = 7e-05 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Frame = +1 Query: 94 KMFIGGLS-RQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 K+F+G + T+ F YG ++ +MK+ F F+ + A R IE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGAVRAIE 53 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 H G ++ R + + + T KIFVG + A E + F + G+V+E ++ Sbjct: 54 ALH---GHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110 Query: 451 ICDHS 465 + D++ Sbjct: 111 VKDYA 115
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 45.8 bits (107), Expect = 7e-05 Identities = 29/134 (21%), Positives = 53/134 (39%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A+M +GGL++ + T + F I + ++ R Sbjct: 171 AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH 230 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 D + G +P + + K+F+GGLP L DD+ K+ + FG + + Sbjct: 231 DYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290 Query: 451 ICDHSTNRSRGFGF 492 + D +T S+G+ F Sbjct: 291 VKDSATGLSKGYAF 304 Score = 37.0 bits (84), Expect = 0.034 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 SA K+FIGGL + KE +G + ++K+ T +G+ F Y D + D+ Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316 Query: 265 IEDNHVIDGKQVEIKRTIPKGAA 333 I ++G Q+ K+ + + A+ Sbjct: 317 IAG---LNGMQLGDKKLLVQRAS 336
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 45.8 bits (107), Expect = 7e-05 Identities = 29/134 (21%), Positives = 53/134 (39%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A+M +GGL++ + T + F I + ++ R Sbjct: 171 AQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPH 230 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 D + G +P + + K+F+GGLP L DD+ K+ + FG + + Sbjct: 231 DYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 290 Query: 451 ICDHSTNRSRGFGF 492 + D +T S+G+ F Sbjct: 291 VKDSATGLSKGYAF 304 Score = 37.0 bits (84), Expect = 0.034 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 SA K+FIGGL + KE +G + ++K+ T +G+ F Y D + D+ Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316 Query: 265 IEDNHVIDGKQVEIKRTIPKGAA 333 I ++G Q+ K+ + + A+ Sbjct: 317 IAG---LNGMQLGDKKLLVQRAS 336
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Frame = +1 Query: 94 KMFIGGLS-RQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 K+F+G + T+ F YG ++ +MK+ F F+ + A R IE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGALRAIE 53 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 H G ++ R + + + T KIFVG + A E + F + G+V+E ++ Sbjct: 54 ALH---GHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110 Query: 451 ICDHS 465 + D++ Sbjct: 111 VKDYA 115
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Frame = +1 Query: 94 KMFIGGLS-RQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 K+F+G + T+ F YG ++ +MK+ F F+ + A R IE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGALRAIE 53 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEI 450 H G ++ R + + + T KIFVG + A E + F + G+V+E ++ Sbjct: 54 ALH---GHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDV 110 Query: 451 ICDHS 465 + D++ Sbjct: 111 VKDYA 115
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/57 (40%), Positives = 33/57 (57%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 ++F+G LP + E KDFF FG VVE I +S + FGF+VFD + V ++ Sbjct: 339 QLFIGNLPHEVDKSELKDFFQNFGNVVELRI---NSGGKLPNFGFVVFDDSEPVQKV 392
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/57 (38%), Positives = 32/57 (56%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 ++FVG LP + ++E K+FF FG VVE I + FGF+VFD + V + Sbjct: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Frame = +1 Query: 34 PQPPA*GSGEMKQQDGAS--------AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIM 189 P+ P G G+M+Q D + + ++F+G L KE+F +G +V+ I Sbjct: 304 PRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRIN 363 Query: 190 KERHTQKPRGFGFITYSDPAIVDRVI 267 + K FGF+ + D V R++ Sbjct: 364 TKGVGGKLPNFGFVVFDDSEPVQRIL 389
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/57 (38%), Positives = 32/57 (56%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 ++FVG LP + ++E K+FF FG VVE I + FGF+VFD + V + Sbjct: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Frame = +1 Query: 34 PQPPA*GSGEMKQQDGAS--------AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIM 189 P+ P G G+M+Q D + + ++F+G L KE+F +G +V+ I Sbjct: 304 PRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRIN 363 Query: 190 KERHTQKPRGFGFITYSDPAIVDRVI 267 + K FGF+ + D V R++ Sbjct: 364 TKGVGGKLPNFGFVVFDDSEPVQRIL 389
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Frame = +1 Query: 151 FGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE--DNHVIDGKQVEIKRTIPK 324 F YGE++++ I+ +R TQ+ RGFGF+T+S + IE + +DG+ + + + Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66 Query: 325 G 327 G Sbjct: 67 G 67 Score = 43.5 bits (101), Expect = 4e-04 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = +1 Query: 415 FSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTV 519 FS +G+V+E +II D T RSRGFGF+ F E+ + Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAM 41
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 +F+ ++ T + FG+YG IVD + + +T++PRGF ++ + D + + Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 271 DNHVIDGKQVEIK 309 D I G+Q+EI+ Sbjct: 72 DRKWICGRQIEIQ 84 Score = 32.7 bits (73), Expect = 0.64 Identities = 13/55 (23%), Positives = 29/55 (52%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +FV + R ++ + F ++G +V+ + D T R RGF ++ F+ + ++ Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 +F+ ++ T + FG+YG IVD + + +T++PRGF ++ + D + + Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71 Query: 271 DNHVIDGKQVEIK 309 D I G+Q+EI+ Sbjct: 72 DRKWICGRQIEIQ 84 Score = 32.7 bits (73), Expect = 0.64 Identities = 13/55 (23%), Positives = 29/55 (52%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +FV + R ++ + F ++G +V+ + D T R RGF ++ F+ + ++ Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/45 (42%), Positives = 28/45 (62%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGF 492 KIF+GGLP L DD+ K+ FGK+ ++ D +T S+G+ F Sbjct: 208 KIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAF 252 Score = 36.6 bits (83), Expect = 0.044 Identities = 27/99 (27%), Positives = 47/99 (47%) Frame = +1 Query: 37 QPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPR 216 +P SG + S K+FIGGL + KE +G++ ++K+ T + Sbjct: 189 KPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSK 248 Query: 217 GFGFITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAA 333 G+ F Y D +I D+ I ++G Q+ K+ I + A+ Sbjct: 249 GYAFCEYVDLSITDQSIAG---LNGMQLGDKKLIVQRAS 284
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 45.1 bits (105), Expect = 1e-04 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 6/157 (3%) Frame = +1 Query: 58 GEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITY 237 G + ++ +++G L + ++ + G+ V +++ R+T G+ F+ + Sbjct: 82 GSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141 Query: 238 SDPAIVDRVIE-DNHVIDGKQVEIKRTIPKGAAPLKDFKTK----KIFVGGL-PTALRDD 399 + P + +N I G K G + +K IFVG L P D Sbjct: 142 ASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFD 201 Query: 400 EFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAE 510 + F S++ +I+ D TN SRG+GF+ F E Sbjct: 202 VYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238 Score = 42.4 bits (98), Expect = 8e-04 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 33/182 (18%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTS-MGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD 258 AS +F+G LS + + + +Y A IM + T RG+GF+ ++D Sbjct: 183 ASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQK 242 Query: 259 RVIED--NHVIDGKQVEIKRTIPKGAAPL--------------------------KDFKT 354 + + + + + + PK A + D Sbjct: 243 SALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTAN 302 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVD 522 +FVGGL + ++E K F FG++V +I +G GF+ F AE ++ Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAEIAIN 356 Query: 523 EL 528 +L Sbjct: 357 QL 358
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 45.1 bits (105), Expect = 1e-04 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 18/188 (9%) Frame = +1 Query: 1 HEGKRPLRPSLPQPPA*GSGEMKQQDGASA----------------AKMFIGGLSRQTSM 132 H ++ +P P PA G Q +G + +++F+G L + Sbjct: 28 HHQQQQQQPPPPPIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITE 87 Query: 133 GTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD--RVIEDNHVIDGKQVEI 306 ++ F KYG+ + I K+ +GFGFI + + +V DN + GKQ+ + Sbjct: 88 EEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 141 Query: 307 KRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGF 486 + + + V LP + ++ ++ FS FG+V +I D R G Sbjct: 142 RFAC----------HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD-DRGRPSGK 190 Query: 487 GFIVFDAE 510 G + F + Sbjct: 191 GIVEFSGK 198
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 45.1 bits (105), Expect = 1e-04 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 18/188 (9%) Frame = +1 Query: 1 HEGKRPLRPSLPQPPA*GSGEMKQQDGASA----------------AKMFIGGLSRQTSM 132 H ++ +P P PA G Q +G + +++F+G L + Sbjct: 28 HHQQQQQQPPPPPIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITE 87 Query: 133 GTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD--RVIEDNHVIDGKQVEI 306 ++ F KYG+ + I K+ +GFGFI + + +V DN + GKQ+ + Sbjct: 88 EEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 141 Query: 307 KRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGF 486 + + + V LP + ++ ++ FS FG+V +I D R G Sbjct: 142 RFAC----------HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD-DRGRPSGK 190 Query: 487 GFIVFDAE 510 G + F + Sbjct: 191 GIVEFSGK 198
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 44.7 bits (104), Expect = 2e-04 Identities = 35/148 (23%), Positives = 67/148 (45%) Frame = +1 Query: 61 EMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 E+ + S +FIG L + + G + +F +GEI++ I K Q + F YS Sbjct: 646 ELDEYHPKSTRTLFIGNLEKDITAGELRSHFEAFGEIIEIDIKK----QGLNAYAFCQYS 701 Query: 241 DPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFS 420 D + V++ +DG+ + R I G K T +++ G+ + + + F+ Sbjct: 702 D---IVSVVKAMRKMDGEHLGSNR-IKLGFG--KSMPTNCVWIDGVDEKVSESFLQSQFT 755 Query: 421 KFGKVVEHEIICDHSTNRSRGFGFIVFD 504 +FG V + I +R+R +++D Sbjct: 756 RFGAVTKVSI------DRNRQLALVLYD 777
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/49 (40%), Positives = 32/49 (65%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 + IF+G LP L + E + +F KFG++ + I+ D T +S+G+ FIVF Sbjct: 107 RTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF 155 Score = 43.9 bits (102), Expect = 3e-04 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +FIG L ++YF K+GEI I+K++ TQK +G+ FI + DP ++ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168 Query: 277 HVIDGKQVEIKRTIP--KGAAPLKDFKTKKI--FVGGLPTALRDDEFKDFFS 420 V G Q++ + I + +K FK +++ +GG + RD F+ Sbjct: 169 GVHRGIQIKDRICIVDIERGRTVKYFKPRRLGGGLGGRGYSNRDSRLPGRFA 220
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/160 (18%), Positives = 66/160 (41%), Gaps = 19/160 (11%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVD-----------------AVIMKERHTQKPRGFG 225 +F+G L + K +F +YG+I A I ++ H + Sbjct: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINA 246 Query: 226 FITYSDPAIVDRVIEDN--HVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDD 399 ++ + + + + ++ N + DG ++ + A+ + +FVG LP + + Sbjct: 247 YVVFKEESAATQALKRNGAQIADGFRIRVDL-----ASETSSRDKRSVFVGNLPYKVEES 301 Query: 400 EFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTV 519 + F G ++ I+ D T +GFG+++F+ +V Sbjct: 302 AIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSV 341 Score = 33.5 bits (75), Expect = 0.37 Identities = 16/77 (20%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-D 273 +F+G L + +++F G I+ I++++ T +GFG++ + + V ++ + Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348 Query: 274 NHVIDGKQVEIKRTIPK 324 N + G+++ + R++ K Sbjct: 349 NSELMGRKLRVMRSVNK 365 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/69 (28%), Positives = 36/69 (52%) Frame = +1 Query: 229 ITYSDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFK 408 + +D I+D ED V K+++I + + LK+ +T +FVG LP + K Sbjct: 150 VKVADRKILDDT-EDTVVSQRKKIQINQEEER----LKNERT--VFVGNLPVTCNKKKLK 202 Query: 409 DFFSKFGKV 435 FF ++G++ Sbjct: 203 SFFKEYGQI 211
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 44.3 bits (103), Expect = 2e-04 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 24/151 (15%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 +++D A + ++F+ LS +S ++ F YG + + + T+KP+GF F+T+ P Sbjct: 392 EEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 451 Query: 247 --AIVDRVIEDNHVIDGKQVEI-KRTIPKGA-----APLKDFKTKK-------------- 360 A+ D V G+ + + TI K A AP +K KK Sbjct: 452 EHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKKKKEAMDKANSSSSHNW 511 Query: 361 --IFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 +F+G P A+ D + + + +V +HE Sbjct: 512 NTLFMG--PNAVADAIAQKYNATKSQVFDHE 540 Score = 32.0 bits (71), Expect = 1.1 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 21/127 (16%) Frame = +1 Query: 184 IMKERHTQKPRGFGFITYSDPAIVDRVIEDNH---------VIDGKQVEIKRTIPKGAAP 336 I++ H K G+ F+ S V + ++ N V KQ R PK P Sbjct: 323 IVRNAHGNKT-GYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTP 381 Query: 337 LKD------------FKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSR 480 + + ++FV L +++ + FS +G + E D T + + Sbjct: 382 WQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPK 441 Query: 481 GFGFIVF 501 GF F+ F Sbjct: 442 GFAFVTF 448
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 44.3 bits (103), Expect = 2e-04 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 14/165 (8%) Frame = +1 Query: 55 SGEMKQQDGASAA------KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPR 216 +GE QQ+ + + LS S T +E F K ++ M + + +P+ Sbjct: 443 TGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKK----ATSIKMPQNNQGRPK 498 Query: 217 GFGFITYSDPAIVDRVIE--DNHVIDGKQVEIKRTIP---KGAAPLK---DFKTKKIFVG 372 G+ F+ + + +N I+G+ + ++ + P KG + + ++K +FV Sbjct: 499 GYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVR 558 Query: 373 GLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDA 507 GL ++ ++ F + I+ D T S+GFGF+ F + Sbjct: 559 GLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSS 600 Score = 42.4 bits (98), Expect = 8e-04 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Frame = +1 Query: 43 PA*GSGEMKQQDGAS--AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPR 216 P+ G M + G + + +F+ GLS T+ T +E F + A I+ +R T + Sbjct: 535 PSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSK 591 Query: 217 GFGFITYSDP---AIVDRVIEDNHVIDGKQVEIKRTIPKG 327 GFGF+ +S P +ED IDG +V + PKG Sbjct: 592 GFGFVDFSSPEDAKAAKEAMEDGE-IDGNKVTLDFAKPKG 630 Score = 39.7 bits (91), Expect = 0.005 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 15/168 (8%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSR----QTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 K + ASA +F+ L+ + KE+FGK V V + FG++ Sbjct: 273 KTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEV-----RIGSSKRFGYVD 327 Query: 235 YSDPAIVDRVIEDNHVIDGKQV---EIKRTIPKGAAPLKDFKTKK----IFVGGLPTALR 393 + +D+ ++ ++GK++ EIK K LK+ K ++ +FV LP + Sbjct: 328 FLSAEDMDKALQ----LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVT 383 Query: 394 DDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 +DE K+ F +E ++ + S+G +I F +AEK ++E Sbjct: 384 EDEMKNVFE---NALEVRLVL-NKEGSSKGMAYIEFKTEAEAEKALEE 427
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/57 (38%), Positives = 33/57 (57%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDEL 528 ++F+G LP + E KDFF +G VVE I +S + FGF+VFD + V ++ Sbjct: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFGFVVFDDSEPVQKV 394 Score = 36.6 bits (83), Expect = 0.044 Identities = 23/100 (23%), Positives = 46/100 (46%) Frame = +1 Query: 7 GKRPLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVI 186 G RP+R + Q ++ D + ++FIG L + K++F YG +V+ Sbjct: 315 GPRPIREAGEQGDIEPRRMVRHPD---SHQLFIGNLPHEVDKSELKDFFQSYGNVVE--- 368 Query: 187 MKERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEI 306 ++ K FGF+ + D V +V+ + ++ +V + Sbjct: 369 LRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRL 408
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/52 (34%), Positives = 34/52 (65%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKT 516 IFVGGLP L + + FS++G++V ++ D T +S+GF F+ ++ +++ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89 Score = 42.4 bits (98), Expect = 8e-04 Identities = 19/52 (36%), Positives = 33/52 (63%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +A +F+GGL + + G F +YGEIV+ +++++ T K +GF F+ Y D Sbjct: 35 SAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYED 86
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 +IFVGG+ +++ + FFS++G V E +I+ D + S+G+GFI F DA+K + E Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFITFETQEDAQKILQE 92 Score = 39.7 bits (91), Expect = 0.005 Identities = 15/71 (21%), Positives = 41/71 (57%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 ++F+GG+ +T+ +++F +YG + + I+ +R +G+GFIT+ +++++ Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 274 NHVIDGKQVEI 306 ++ K ++ Sbjct: 93 AEKLNYKDKKL 103
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 43.9 bits (102), Expect = 3e-04 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 6/167 (3%) Frame = +1 Query: 34 PQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKP 213 P P + SG Q + ++F+G + R F K G I D +M + T Sbjct: 57 PPPDSVYSG----QQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLN 112 Query: 214 RGFGFITYSDPAIVDRVIE--DNHVI-DGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPT 384 RG+ F+T+ ++ +NH I GK + + ++ ++FVG +P Sbjct: 113 RGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV----------ANNRLFVGSIPK 162 Query: 385 ALRDDEFKDFFSKFGKVVEHEIICDHSTN---RSRGFGFIVFDAEKT 516 + ++ + FSK + + ++I H + ++RGF F+ ++ KT Sbjct: 163 SKTKEQILEEFSKVTEGLT-DVILYHQPDDKKKNRGFCFLEYEDHKT 208 Score = 39.3 bits (90), Expect = 0.007 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +IFVG +P L +DE F K G + + ++ D T +RG+ F+ F ++ E Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 128 Score = 36.2 bits (82), Expect = 0.058 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKER--HTQKPRGFGFITYSDPAIVDRVI 267 ++F+G + + + E F K E + VI+ + +K RGF F+ Y D + Sbjct: 154 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA- 212 Query: 268 EDNHVIDGKQVEIKRTIP--KGAAPLKD------FKTKKIFVGGLPTALRDDEFKDFFSK 423 ++ GK V++ + + A P++D K K +FV L + ++ + FS+ Sbjct: 213 -RRRLMSGK-VKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQ 270 Query: 424 FGKVVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 FGK+ + + + FI FD A K ++E+ Sbjct: 271 FGKL--------ERVKKLKDYAFIHFDERDGAVKAMEEM 301
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/86 (27%), Positives = 42/86 (48%) Frame = +1 Query: 22 RPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERH 201 RPS P + ++ ++ +F+G L +T+ KE+FG+ G+I +M Sbjct: 205 RPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFED 264 Query: 202 TQKPRGFGFITYSDPAIVDRVIEDNH 279 T K +GFGF+ + D + +E H Sbjct: 265 TGKCKGFGFVDFPDIDTCMKAMELGH 290 Score = 38.1 bits (87), Expect = 0.015 Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 36/184 (19%) Frame = +1 Query: 58 GEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKY-GEIVDAV----------------- 183 GE +++ S +++G LS T+ ++F + E++ V Sbjct: 94 GESQEESKRSPWGIWVGNLSFHTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIH 153 Query: 184 --IMKERHTQKPRGFGFITYSDPAIVDRVIE-DNHVIDGKQVEIKRTIPKGAAPLKDFKT 354 + KE+ Q +GF ++ ++ + ++ ++G+ + IK P K T Sbjct: 154 MPMSKEKRFQN-KGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANT 212 Query: 355 ----------KK-----IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFG 489 KK +FVG L D + K+ F + G++ ++ T + +GFG Sbjct: 213 LSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFG 272 Query: 490 FIVF 501 F+ F Sbjct: 273 FVDF 276
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 43.9 bits (102), Expect = 3e-04 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 6/167 (3%) Frame = +1 Query: 34 PQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKP 213 P P + SG Q + ++F+G + R F K G I D +M + T Sbjct: 147 PPPDSVYSG----QQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLN 202 Query: 214 RGFGFITYSDPAIVDRVIE--DNHVI-DGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPT 384 RG+ F+T+ ++ +NH I GK + + ++ ++FVG +P Sbjct: 203 RGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV----------ANNRLFVGSIPK 252 Query: 385 ALRDDEFKDFFSKFGKVVEHEIICDHSTN---RSRGFGFIVFDAEKT 516 + ++ + FSK + + ++I H + ++RGF F+ ++ KT Sbjct: 253 SKTKEQILEEFSKVTEGLT-DVILYHQPDDKKKNRGFCFLEYEDHKT 298 Score = 39.3 bits (90), Expect = 0.007 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +IFVG +P L +DE F K G + + ++ D T +RG+ F+ F ++ E Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218 Score = 36.2 bits (82), Expect = 0.058 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKER--HTQKPRGFGFITYSDPAIVDRVI 267 ++F+G + + + E F K E + VI+ + +K RGF F+ Y D + Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA- 302 Query: 268 EDNHVIDGKQVEIKRTIP--KGAAPLKD------FKTKKIFVGGLPTALRDDEFKDFFSK 423 ++ GK V++ + + A P++D K K +FV L + ++ + FS+ Sbjct: 303 -RRRLMSGK-VKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQ 360 Query: 424 FGKVVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 FGK+ + + + FI FD A K ++E+ Sbjct: 361 FGKL--------ERVKKLKDYAFIHFDERDGAVKAMEEM 391
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 43.9 bits (102), Expect = 3e-04 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 6/167 (3%) Frame = +1 Query: 34 PQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKP 213 P P + SG Q + ++F+G + R F K G I D +M + T Sbjct: 147 PPPDSVYSG----QQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLN 202 Query: 214 RGFGFITYSDPAIVDRVIE--DNHVI-DGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPT 384 RG+ F+T+ ++ +NH I GK + + ++ ++FVG +P Sbjct: 203 RGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV----------ANNRLFVGSIPK 252 Query: 385 ALRDDEFKDFFSKFGKVVEHEIICDHSTN---RSRGFGFIVFDAEKT 516 + ++ + FSK + + ++I H + ++RGF F+ ++ KT Sbjct: 253 SKTKEQILEEFSKVTEGLT-DVILYHQPDDKKKNRGFCFLEYEDHKT 298 Score = 39.3 bits (90), Expect = 0.007 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +IFVG +P L +DE F K G + + ++ D T +RG+ F+ F ++ E Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218 Score = 36.2 bits (82), Expect = 0.058 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 14/159 (8%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKER--HTQKPRGFGFITYSDPAIVDRVI 267 ++F+G + + + E F K E + VI+ + +K RGF F+ Y D + Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQA- 302 Query: 268 EDNHVIDGKQVEIKRTIP--KGAAPLKD------FKTKKIFVGGLPTALRDDEFKDFFSK 423 ++ GK V++ + + A P++D K K +FV L + ++ + FS+ Sbjct: 303 -RRRLMSGK-VKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQ 360 Query: 424 FGKVVEHEIICDHSTNRSRGFGFIVFD----AEKTVDEL 528 FGK+ + + + FI FD A K ++E+ Sbjct: 361 FGKL--------ERVKKLKDYAFIHFDERDGAVKAMEEM 391
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVD 522 +FVGG+ + + E + FF+++G V E +II D T S+G+GF+ F D +K V+ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 98 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/76 (23%), Positives = 42/76 (55%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +F+GG+ + + +F +YG + + I+ +R T +G+GF+++ + V +++E Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQ 100 Query: 277 HVIDGKQVEIKRTIPK 324 GK++++ I K Sbjct: 101 INFHGKKLKLGPAIRK 116
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVD 522 +FVGG+ + + E + FF+++G V E +II D T S+G+GF+ F D +K V+ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/76 (23%), Positives = 42/76 (55%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +F+GG+ + + +F +YG + + I+ +R T +G+GF+++ + V +++E Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 277 HVIDGKQVEIKRTIPK 324 GK++++ I K Sbjct: 101 INFHGKKLKLGPAIRK 116
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVD 522 +FVGG+ + + E + FF+++G V E +II D T S+G+GF+ F D +K V+ Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/76 (23%), Positives = 42/76 (55%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +F+GG+ + + +F +YG + + I+ +R T +G+GF+++ + V +++E Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 277 HVIDGKQVEIKRTIPK 324 GK++++ I K Sbjct: 101 INFHGKKLKLGPAIRK 116
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVD 522 +FVGG+ + + E + FF+++G V E +II D T S+G+GF+ F D +K V+ Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVE 98 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/76 (23%), Positives = 42/76 (55%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +F+GG+ + + +F +YG + + I+ +R T +G+GF+++ + V +++E Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 277 HVIDGKQVEIKRTIPK 324 GK++++ I K Sbjct: 101 INFHGKKLKLGPAIRK 116
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 43.5 bits (101), Expect = 4e-04 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS---DPAI 252 A + +F+ GLS T+ T KE F V+A I+ +R T +GFGF+ +S D Sbjct: 499 AQSKTLFVRGLSEDTTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKA 555 Query: 253 VDRVIEDNHVIDGKQVEIKRTIPKG 327 +ED IDG +V + PKG Sbjct: 556 AKEAMEDGE-IDGNKVTLDFAKPKG 579 Score = 43.5 bits (101), Expect = 4e-04 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 5/154 (3%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 SG K +G S + + LS + + +E F K I ++ + +GF FI Sbjct: 403 SGNKKGPEGDSKV-LVVNNLSYSATEDSLREVFEKATSI-----RIPQNQGRAKGFAFIE 456 Query: 235 YSDPAIVDRVIE--DNHVIDGKQVEIKRTI---PKGAAPLKDFKTKKIFVGGLPTALRDD 399 +S ++ +N I+G+ + ++ + P+G ++K +FV GL ++ Sbjct: 457 FSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEE 516 Query: 400 EFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 K+ F V I+ D T S+GFGF+ F Sbjct: 517 TLKEAFDGS---VNARIVTDRDTGASKGFGFVDF 547
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 43.5 bits (101), Expect = 4e-04 Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Frame = +1 Query: 103 IGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE--DN 276 I LS QT+ + F +YG+I D I +++++++ +GFGF+ + + + ++ D Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 277 HVIDGKQVEI 306 ++DG+++ + Sbjct: 83 KLVDGRELRV 92
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 43.5 bits (101), Expect = 4e-04 Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 7/95 (7%) Frame = +1 Query: 238 SDPAIVDRVIEDNHVIDGKQVEIKRTIPKGAAPLKDFK-------TKKIFVGGLPTALRD 396 SDP D I D + KQ E++R + A KD K + ++F+ LP A Sbjct: 271 SDPESEDEPIHDQG-FECKQAEMQRKAQQAAE--KDQKLVDQIMESGRLFIRNLPFAASG 327 Query: 397 DEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 DE FF FG V + I D T S+G F+ F Sbjct: 328 DEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSF 362
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 43.1 bits (100), Expect = 5e-04 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 2/138 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD--RVI 267 ++F+G L + FK F KYGE + I K +GFGFI A+ + + Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 351 Query: 268 EDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 D+ + G+Q+ ++ A + V L + ++ ++ FS+FG + Sbjct: 352 LDDTPMRGRQLRVRFATHAAA----------LSVRNLSPYVSNELLEEAFSQFGPIERAV 401 Query: 448 IICDHSTNRSRGFGFIVF 501 +I D RS G G + F Sbjct: 402 VIVD-DRGRSTGKGIVEF 418 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDA 507 ++FVG LP + +DEFK F+K+G+ E I N+ +GFGFI ++ Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLES 341
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 43.1 bits (100), Expect = 5e-04 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 +IFVGG+ + + + FFS++G V E +I+ D + S+G+GF+ F DA+K + E Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQE 92 Score = 39.3 bits (90), Expect = 0.007 Identities = 14/71 (19%), Positives = 41/71 (57%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 ++F+GG+ +T+ +++F +YG + + I+ +R +G+GF+T+ +++++ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 274 NHVIDGKQVEI 306 ++ K ++ Sbjct: 93 AEKLNYKDKKL 103
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 43.1 bits (100), Expect = 5e-04 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVDE 525 +IFVGG+ + + + FFS++G V E +I+ D + S+G+GF+ F DA+K + E Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQE 92 Score = 39.3 bits (90), Expect = 0.007 Identities = 14/71 (19%), Positives = 41/71 (57%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 ++F+GG+ +T+ +++F +YG + + I+ +R +G+GF+T+ +++++ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 274 NHVIDGKQVEI 306 ++ K ++ Sbjct: 93 AEKLNYKDKKL 103
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 43.1 bits (100), Expect = 5e-04 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 2/138 (1%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD--RVI 267 ++F+G L + FK F KYGE + I K +GFGFI A+ + + Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 343 Query: 268 EDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHE 447 D+ + G+Q+ ++ A + V L + ++ ++ FS+FG + Sbjct: 344 LDDTPMRGRQLRVRFATHAAA----------LSVRNLSPYVSNELLEEAFSQFGPIERAV 393 Query: 448 IICDHSTNRSRGFGFIVF 501 +I D RS G G + F Sbjct: 394 VIVD-DRGRSTGKGIVEF 410 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDA 507 ++FVG LP + +DEFK F+K+G+ E I N+ +GFGFI ++ Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLES 333
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 43.1 bits (100), Expect = 5e-04 Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 20/190 (10%) Frame = +1 Query: 1 HEGKRPLRPSLPQPPA*GSGEM--KQQDGASA----------------AKMFIGGLSRQT 126 H+ ++ + P PP +G+ Q +G + +++F+G L Sbjct: 28 HQQQQQQQQQQPPPPIPANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDI 87 Query: 127 SMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD--RVIEDNHVIDGKQV 300 + ++ F KYG+ + I K+ +GFGFI + + +V DN + GKQ+ Sbjct: 88 TEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 141 Query: 301 EIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSR 480 ++ + + V LP + ++ ++ FS FG+V +I D R Sbjct: 142 RVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD-DRGRPS 190 Query: 481 GFGFIVFDAE 510 G G + F + Sbjct: 191 GKGIVEFSGK 200
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 43.1 bits (100), Expect = 5e-04 Identities = 17/51 (33%), Positives = 31/51 (60%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 ++VG LP L + + K +F +FGKV+ + T S+G+GF+ F+ ++ Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDE 97 Score = 35.0 bits (79), Expect = 0.13 Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Frame = +1 Query: 85 SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRV 264 S +++G L R K YF ++G+++ + + + T +G+GF+ + + V Sbjct: 43 SPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIV 102 Query: 265 IED-NHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGL 378 E N+ + G+++ IP + +K+FVG + Sbjct: 103 AETMNNYLMGERIIKCHVIP------PEKVHEKLFVGSI 135
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 43.1 bits (100), Expect = 5e-04 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 14/149 (9%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 +F+G L+ ++ E+F + G++V A I+ R RG G + +++ VDR I Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHH--RGMGTVEFTNSDDVDRAIRQY 195 Query: 271 DNHVIDGKQVEIKRTIPKGAAPLKD------------FKTKKIFVGGLPTALRDDEFKDF 414 D +++ +++ P + +K+ KT ++ V LP ++ KD Sbjct: 196 DGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDI 255 Query: 415 FSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 F + G V ++ D S G G + F Sbjct: 256 FKECGNVAHADVELD-GDGVSTGSGTVSF 283 Score = 35.4 bits (80), Expect = 0.098 Identities = 21/57 (36%), Positives = 28/57 (49%) Frame = +1 Query: 352 TKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 + IFVG L ++ +FFS+ GKVV +II S RG G + F VD Sbjct: 135 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIIT--SRGHHRGMGTVEFTNSDDVD 189
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 43.1 bits (100), Expect = 5e-04 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 +++ LSR + + FGKYG+IV I++++HT PRG FI ++ Sbjct: 166 LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFN 213
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 42.7 bits (99), Expect = 6e-04 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 K++ V +P RD + + F +FGK+++ EII + S+GFGF+ F+ D Sbjct: 121 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADAD 174 Score = 42.4 bits (98), Expect = 8e-04 Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Frame = +1 Query: 142 KEYFGKYGEIVDA-VIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEI 306 ++ FG++G+I+D +I ER + +GFGF+T+ + A DR E H V++G+++E+ Sbjct: 138 RQMFGQFGKILDVEIIFNERGS---KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 192
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 42.7 bits (99), Expect = 6e-04 Identities = 18/78 (23%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Frame = +1 Query: 82 ASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDR 261 A + +F+G ++ + +++F G+I ++ +R+T P+G+G+I + PA ++ Sbjct: 61 ADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREK 120 Query: 262 VIEDN-HVIDGKQVEIKR 312 ++ N + GK++ + R Sbjct: 121 ALQLNGGELKGKKIAVSR 138
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 42.7 bits (99), Expect = 6e-04 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 2/142 (1%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVD--RV 264 +++F+G L + ++ F KYG+ + I K+ +GFGFI + + +V Sbjct: 79 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKV 132 Query: 265 IEDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEH 444 DN + GKQ+ ++ + + V LP + ++ ++ FS FG+V Sbjct: 133 ELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFGQVERA 182 Query: 445 EIICDHSTNRSRGFGFIVFDAE 510 +I D R G G + F + Sbjct: 183 VVIVD-DRGRPSGKGIVEFSGK 203
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 42.7 bits (99), Expect = 6e-04 Identities = 17/52 (32%), Positives = 34/52 (65%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKT 516 IF+GGLP L + + FS++G++V ++ D T +S+GF F+ ++ +++ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/52 (36%), Positives = 33/52 (63%) Frame = +1 Query: 88 AAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSD 243 +A +F+GGL + + G F +YGEIV+ +++++ T K +GF F+ Y D Sbjct: 35 SAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYED 86
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 42.7 bits (99), Expect = 6e-04 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 K++ V +P RD + + F +FGK+++ EII + S+GFGF+ F+ D Sbjct: 116 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADAD 169 Score = 42.4 bits (98), Expect = 8e-04 Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Frame = +1 Query: 142 KEYFGKYGEIVDA-VIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEI 306 ++ FG++G+I+D +I ER + +GFGF+T+ + A DR E H V++G+++E+ Sbjct: 133 RQMFGQFGKILDVEIIFNERGS---KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 187
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 42.7 bits (99), Expect = 6e-04 Identities = 19/56 (33%), Positives = 32/56 (57%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 K++ V +P RD + + F +FGK+++ EII + S+GFGF+ F+ D Sbjct: 117 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII--FNERGSKGFGFVTFENSADAD 170 Score = 42.4 bits (98), Expect = 8e-04 Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 3/58 (5%) Frame = +1 Query: 142 KEYFGKYGEIVDA-VIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEI 306 ++ FG++G+I+D +I ER + +GFGF+T+ + A DR E H V++G+++E+ Sbjct: 134 RQMFGQFGKILDVEIIFNERGS---KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 188
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 42.4 bits (98), Expect = 8e-04 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 4/147 (2%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +FIG L + T+ + F ++GEIVD I K + + F+ Y D A V + I+ Sbjct: 441 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQ---YAFLQYCDIASVCKAIKK- 496 Query: 277 HVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIIC 456 +DG+ + R + G K T +++ GL + + D F ++G VV +++ Sbjct: 497 --MDGEYLGNNR-LKLGFG--KSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVV--KVVF 549 Query: 457 DHSTNRSRGFGFIVF----DAEKTVDE 525 D R +G +++ DA+ V E Sbjct: 550 D----RLKGMALVLYSEIEDAQAAVKE 572 Score = 29.3 bits (64), Expect = 7.1 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 15/145 (10%) Frame = +1 Query: 61 EMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 E ++ G + + + G F E F K+G++ I H +G + + Sbjct: 331 EPRKSFGIKVQNLPVRSIDTSLKDGLFHE-FKKFGKVTSVQI----HGASEERYGLVFFR 385 Query: 241 DPAIVDRVI--EDNHVIDGKQVEIKRTIPKGAAPLKDFK-------------TKKIFVGG 375 ++ + + G Q+E+ + +F+ T+ +F+G Sbjct: 386 QQEDQEKALTASKGKLFFGMQIEVTAWVGPETESENEFRPLDERIDEFHPKATRTLFIGN 445 Query: 376 LPTALRDDEFKDFFSKFGKVVEHEI 450 L + ++ F +FG++V+ +I Sbjct: 446 LEKTTTYHDLRNIFQRFGEIVDIDI 470
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 42.4 bits (98), Expect = 8e-04 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-- 270 +FI ++ T + FG+YG IVD I + +T++PRGF ++ + D + + Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71 Query: 271 DNHVIDGKQVEIK 309 + + G+Q+EI+ Sbjct: 72 NRKWVCGRQIEIQ 84
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 42.4 bits (98), Expect = 8e-04 Identities = 16/47 (34%), Positives = 30/47 (63%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITY 237 +F+GG+++ S+G F KYG I+ ++ ++ +P G+GFI+Y Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISY 243 Score = 38.5 bits (88), Expect = 0.012 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 IFVGG+ +L E FSK+G ++ ++I D + G+GFI + Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISY 243 Score = 33.5 bits (75), Expect = 0.37 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 19/77 (24%) Frame = +1 Query: 334 PLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIIC------------------- 456 P+ + + ++V +P + D++ DF+ FG+++ ++I Sbjct: 533 PMSNQQESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDN 592 Query: 457 DHSTNRSRGFGFIVFDA 507 D SRG+GF+ F++ Sbjct: 593 DLPVGSSRGYGFVSFES 609
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 42.0 bits (97), Expect = 0.001 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 17/172 (9%) Frame = +1 Query: 58 GEMKQQDGASAAK-----MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIM-----KERHTQ 207 GE K+ D + + +F+ L+ T++ + F V A + K Sbjct: 601 GESKEDDEIESVQGPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKT 660 Query: 208 KPRGFGFITYSDPAIVDRVIE--DNHVIDGKQVEIKRTIPKG-----AAPLKDFKTKKIF 366 GFGF+ + + I D HV+DG ++++K + +G ++ K K+ KI Sbjct: 661 LSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKII 720 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 + LP + + F FG++ + + +RGF F+ F+ K + Sbjct: 721 IKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAE 771 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 +++ + GL + + +E+F K G++ D +MK+R+ + R F FI Y +R ++ Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGES-RKFAFIGYKSADAAERAVK 60 Query: 271 --DNHVIDGKQVEIK--RTIPKGAAPLKDFKTKK 360 + ID ++E++ +T PL FK K+ Sbjct: 61 YFNKSFIDTARIEVEFAKTFSDPTVPL-SFKEKR 93 Score = 33.5 bits (75), Expect = 0.37 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE- 270 ++FI +S + S F+ F +YG + + I + T K +GF ++ + R Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 271 -DNHVIDGKQVEIKRTIPKGAAPLKDFKTKKI 363 D + G+ + I K L +F K + Sbjct: 371 LDKQIFQGRLLHILPADKKKDHRLDEFDLKNL 402 Score = 29.6 bits (65), Expect = 5.4 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFI 495 ++ V GLP +++ ++FFSK G V + +++ SR F FI Sbjct: 3 RLIVKGLPKYYTEEKLREFFSKQGDVTDVKLM-KKRNGESRKFAFI 47
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 41.6 bits (96), Expect = 0.001 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 10/166 (6%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKY-GEIVDAVIMKERHTQKPR----G 219 +G ++ ++ +F+ L+ +T+ + F G +V V MK K + G Sbjct: 593 TGSNDERPATASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMG 652 Query: 220 FGFITYS--DPAIVDRVIEDNHVIDGKQVEIK---RTIPKGAAPLKDFKTKKIFVGGLPT 384 FGF+ +S + A + + D HV+DG ++++K R + K KI + LP Sbjct: 653 FGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDSKILIKNLPF 712 Query: 385 ALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVD 522 + + F FG ++ + + SRGF F + + K + Sbjct: 713 EATKKDVQKLFGAFGS-LKTVRVPKKFNSESRGFAFAEYVSAKEAE 757 Score = 33.9 bits (76), Expect = 0.29 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP--AIVDRVI 267 ++F+ L F++ F +YGE+ + + T + +GF + + DP AI Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 268 EDNHVIDGKQVEIKRTIPK 324 +D + G+ + I PK Sbjct: 362 QDGKIFQGRLLHILPGKPK 380
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 2/88 (2%) Frame = +1 Query: 91 AKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE 270 A ++IG L+R+ + G F +YG VD ++ ++ +T + +GF ++ Y D ++ Sbjct: 31 AYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVD 90 Query: 271 --DNHVIDGKQVEIKRTIPKGAAPLKDF 348 + I G+ ++I T + L+ + Sbjct: 91 NLNGFKIGGRALKIDHTFYRPKRSLQKY 118 Score = 32.0 bits (71), Expect = 1.1 Identities = 13/52 (25%), Positives = 30/52 (57%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKT 516 I++G L L + + FS++G V+ + D +T S+GF ++ ++ +++ Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRS 84
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/70 (25%), Positives = 38/70 (54%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 ++Q A +FIG + +++ +E+F G+IV I K++ T+K + F +I + D Sbjct: 93 EEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDS 152 Query: 247 AIVDRVIEDN 276 + ++ + N Sbjct: 153 SSIENALVMN 162
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 41.2 bits (95), Expect = 0.002 Identities = 35/136 (25%), Positives = 65/136 (47%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIEDN 276 +FIG L + T+ + F ++GEIVD I K + + F+ Y D A V + I+ Sbjct: 440 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQ---YAFLQYCDIASVCKAIKK- 495 Query: 277 HVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIIC 456 +DG+ + R + G K T +++ GL + + D F ++G VV +++ Sbjct: 496 --MDGEYLGNNR-LKLGFG--KSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVV--KVVF 548 Query: 457 DHSTNRSRGFGFIVFD 504 D R +G ++++ Sbjct: 549 D----RLKGMALVLYN 560 Score = 28.9 bits (63), Expect = 9.2 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 17/129 (13%) Frame = +1 Query: 115 SRQTSM--GTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVI--EDNHV 282 S TS+ G F E F K+G++ I H +G + + ++ + + Sbjct: 346 STDTSLKDGLFHE-FKKFGKVTSVQI----HGTSEERYGLVFFRQQEDQEKALTASKGKL 400 Query: 283 IDGKQVEIKRTIPKGAAPLKDFK-------------TKKIFVGGLPTALRDDEFKDFFSK 423 G Q+E+ I +F+ T+ +F+G L + ++ F + Sbjct: 401 FFGMQIEVTAWIGPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQR 460 Query: 424 FGKVVEHEI 450 FG++V+ +I Sbjct: 461 FGEIVDIDI 469
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = +1 Query: 109 GLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVIEDNHV 282 GLS T+ +E F KYG I D I+ ++ +++ RGF F+ + D A + + Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183 Query: 283 IDGKQVEIKRTIPK 324 +DG+++ + +I K Sbjct: 184 LDGRRIRVDFSITK 197 Score = 38.9 bits (89), Expect = 0.009 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = +1 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 V GL + + ++ FSK+G + + I+ D + RSRGF F+ F+ Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 167
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = +1 Query: 109 GLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVIEDNHV 282 GLS T+ +E F KYG I D I+ ++ +++ RGF F+ + D A + + Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183 Query: 283 IDGKQVEIKRTIPK 324 +DG+++ + +I K Sbjct: 184 LDGRRIRVDFSITK 197 Score = 38.9 bits (89), Expect = 0.009 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = +1 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 V GL + + ++ FSK+G + + I+ D + RSRGF F+ F+ Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 167
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = +1 Query: 109 GLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS--DPAIVDRVIEDNHV 282 GLS T+ +E F KYG I D I+ ++ +++ RGF F+ + D A + + Sbjct: 124 GLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME 183 Query: 283 IDGKQVEIKRTIPK 324 +DG+++ + +I K Sbjct: 184 LDGRRIRVDFSITK 197 Score = 38.9 bits (89), Expect = 0.009 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = +1 Query: 367 VGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 V GL + + ++ FSK+G + + I+ D + RSRGF F+ F+ Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 167
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 19/155 (12%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVD-----------------AVIMKERHTQKPRGFG 225 +F+G L + K +F +YG++ A I ++ H + Sbjct: 185 VFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSINA 244 Query: 226 FITYSDPAIVDRVIEDN--HVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDD 399 ++ + + + ++ N + +G ++ + A+ + +FVG LP + + Sbjct: 245 YVVFKEERAAAKALQRNGAQIAEGFRIRVDL-----ASETASRDKRSVFVGNLPYRVDES 299 Query: 400 EFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFD 504 ++ F G +V I+ + T RGFG+++F+ Sbjct: 300 ALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 334 Score = 35.4 bits (80), Expect = 0.098 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = +1 Query: 97 MFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIE-D 273 +F+G L + +E+F G IV I++ T RGFG++ + + V ++ + Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 346 Query: 274 NHVIDGKQVEIKRTIPK 324 N + G+++ + R++ K Sbjct: 347 NSELMGRKLRVMRSVNK 363
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = +1 Query: 286 DGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHS 465 DG+Q++ R+ D T + V LP + +DE +D F K G+V+ I D Sbjct: 164 DGRQIDRNRS---------DENTCR--VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKV 212 Query: 466 TNRSRGFGFIVF----DAEKTVDEL 528 T +GF F+ F DA + + EL Sbjct: 213 TGLPKGFAFVTFESRDDAARAIAEL 237 Score = 33.9 bits (76), Expect = 0.29 Identities = 14/57 (24%), Positives = 29/57 (50%) Frame = +1 Query: 103 IGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDPAIVDRVIED 273 + L ++ + ++ FGK G ++ I +++ T P+GF F+T+ R I + Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAE 236
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%) Frame = +1 Query: 268 EDNHVIDGKQVEI-KRTIPKGA----APLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGK 432 E N +D K+ E +R +P+ A K +T ++F+ + ++++F+ FS FG+ Sbjct: 311 EQNESLDTKKEEQPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGE 370 Query: 433 VVEHEIICDHSTNRSRGFGFIVFDAEK 513 + E + D T +S+GF +++F K Sbjct: 371 LEEVHVALDTRTGQSKGFAYVLFKDSK 397 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP--AIVDRVI 267 ++F+ + + F++ F +GE+ + + + T + +GF ++ + D A+ V Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVE 405 Query: 268 EDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKI 363 D + G+ + I K + L +F K + Sbjct: 406 LDKQIFQGRLLHILPGEEKKSHRLDEFDLKNM 437
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = +1 Query: 301 EIKRTIP-KGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRS 477 E++ IP + A K KT ++F+ + + +D+FK FS +G++ E + D T S Sbjct: 306 ELQEEIPDEEQAIAKIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNS 365 Query: 478 RGFGFIVF 501 +GF +++F Sbjct: 366 KGFAYVLF 373 Score = 34.3 bits (77), Expect = 0.22 Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP--AIVDRVI 267 ++F+ + ++ FK+ F YGE+ + + + T +GF ++ ++ P A+ + Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 268 EDNHVIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLP 381 D + G+ + I A +KD + + + +P Sbjct: 386 LDKQIFQGRLLHI-----LAADEMKDHRLDEFDLKNMP 418
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVD 522 K++ V +P RD + K F KFG V + EII + S+GFGF+ DAE+ Sbjct: 153 KRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEII--FNERGSKGFGFVTMERPQDAERARQ 210 Query: 523 EL 528 EL Sbjct: 211 EL 212 Score = 34.3 bits (77), Expect = 0.22 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Frame = +1 Query: 142 KEYFGKYGEIVDA-VIMKERHTQKPRGFGFITYSDPAIVDRVIEDNH--VIDGKQVEI 306 K F K+G + D +I ER + +GFGF+T P +R ++ H +I+G+++E+ Sbjct: 170 KTMFEKFGVVSDVEIIFNERGS---KGFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 40.8 bits (94), Expect = 0.002 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 12/139 (8%) Frame = +1 Query: 55 SGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFIT 234 SG ++ G ++++G L ++ F KYG I + + +K RH P F F+ Sbjct: 3 SGWADERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIRE-IELKNRHGLVP--FAFVR 59 Query: 235 YSDPAIVDRVIEDNHVIDGKQ----VEIKRTI------PKGA--APLKDFKTKKIFVGGL 378 + DP + I + D Q VE RT P+GA P ++ V GL Sbjct: 60 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGARNGPPTRRSDFRVLVSGL 119 Query: 379 PTALRDDEFKDFFSKFGKV 435 P + + KD + G V Sbjct: 120 PPSGSWQDLKDHMREAGDV 138 Score = 33.9 bits (76), Expect = 0.29 Identities = 16/56 (28%), Positives = 32/56 (57%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEKTVDE 525 +I+VG LP+ +R+ + +D F K+G++ E E+ H F F+ F+ + ++ Sbjct: 16 RIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGL---VPFAFVRFEDPRDAED 68
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Frame = +1 Query: 94 KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQK----PRGFGFITYSDPAIVDR 261 ++F+G LS T + F G + I R + P G F+T+++ VD+ Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104 Query: 262 VIE--DNHVIDGKQVEIKRTIPKGAAPLKDFKTKK 360 IE + +D +++ +++ P P+KD K K Sbjct: 105 AIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSK 139 Score = 34.3 bits (77), Expect = 0.22 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 16/98 (16%) Frame = +1 Query: 283 IDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKV--------- 435 +D KQ EIK G K I+V GL L ++ K+ F + Sbjct: 181 VDKKQNEIKGKGGSGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSL 240 Query: 436 ---VEHEIICDHSTNRSRGFGFIVF----DAEKTVDEL 528 + I R RGFGF+ F D + ++E+ Sbjct: 241 PPYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEM 278
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Frame = +1 Query: 67 KQQDGASAA--KMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYS 240 K++ G S+ ++ GLS T K F KYG++V A ++ + R +GF+T S Sbjct: 396 KEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMS 455 Query: 241 DPAIVDRVIEDNH--VIDGKQVEIKR 312 + I H + GK + +++ Sbjct: 456 TAEEATKCINHLHKTELHGKMISVEK 481 Score = 36.6 bits (83), Expect = 0.044 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Frame = +1 Query: 355 KKIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF----DAEKTVD 522 + +V GL + R + K+ FSK+GKVV +++ + + +R +GF+ +A K ++ Sbjct: 406 RNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCIN 465 Query: 523 EL 528 L Sbjct: 466 HL 467
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Frame = +1 Query: 301 EIKRTIPKGAAPLKDFKTKK--------IFVGGLPTALRDDEFKDFFSKFGKVVEHEIIC 456 +IKR PK A K K KK I+V LP + E +F++FG + E + Sbjct: 65 KIKRLNPKKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLAR 124 Query: 457 DHSTNRSRGFGFIVF 501 + T SR +GF+ F Sbjct: 125 NKKTGNSRHYGFLEF 139 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/74 (25%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Frame = +1 Query: 145 EYFGKYGEIVDAVIMKERHTQKPRGFGFITY--SDPAIVDRVIEDNHVIDGKQVEIKRTI 318 +YF ++G++ + + + + T R +GF+ + + A++ + +N+++ G +++ R + Sbjct: 109 KYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQV-RVL 167 Query: 319 PKGAAPLKDFKTKK 360 PKGA K +K KK Sbjct: 168 PKGAKIEKLYKYKK 181
>CPB1_CAEJA (Q6E3C7) Cytoplasmic polyadenylation element-binding protein 1| Length = 617 Score = 40.4 bits (93), Expect = 0.003 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 15/98 (15%) Frame = +1 Query: 280 VIDGKQVEIKRTIPKGAAPLKDFKTKKIFVGGLPTALRDDEFKDFFSKFGKVV------- 438 V+ G + KR+I A PL ++K+F+GGLP + ++E F FGKV+ Sbjct: 253 VLKGLEASKKRSI--SAEPLY---SRKVFIGGLPIDVTEEEVWATFGWFGKVLVDWPRRP 307 Query: 439 EH-------EIICDHSTNRS-RGFGFIVFDAEKTVDEL 528 EH E+ +RS G+ F+VF EK V EL Sbjct: 308 EHGGRGDFYEMDMGRRNSRSVSGYVFLVFQDEKAVQEL 345
>MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein msa1| Length = 533 Score = 40.4 bits (93), Expect = 0.003 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Frame = +1 Query: 28 SLPQPPA*GSGEMKQQD--GASAAKMFIGGLSRQTS----MGTFKEYFGKYGEIVDAVIM 189 S P P + SG + G A +F+ L+ S T K+YF ++G ++ ++ Sbjct: 56 STPIPSSSSSGVLNPSSVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVL 115 Query: 190 KERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGKQVEIKR-----TIPKGAAPLKDFKT 354 K+ Q+P F +D A N ++DG+ + I+R TI +AP + + T Sbjct: 116 KD-WLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPYIT 174 Query: 355 KK 360 KK Sbjct: 175 KK 176 Score = 30.0 bits (66), Expect = 4.1 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +1 Query: 361 IFVGGL-PTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 IFVG L P D FSK+GKV++ +II ++ F F+ FD+++ Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKII---HQSKKPAFAFLRFDSQQ 415
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Frame = +1 Query: 325 GAAPLKDFKTKK--IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIV 498 G P + K + +FV L D++ + FS+FGK++ E+I D T S + FI Sbjct: 241 GDLPFAEVKPPENVLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIE 300 Query: 499 FDAEKTVDE 525 F+ +K+ +E Sbjct: 301 FEDKKSCEE 309
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/70 (25%), Positives = 37/70 (52%) Frame = +1 Query: 67 KQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITYSDP 246 ++Q A +FIG + +++ +E+F G IV I K++ T+K + F +I + D Sbjct: 53 EEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDS 112 Query: 247 AIVDRVIEDN 276 + ++ + N Sbjct: 113 SSIENALVMN 122
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 40.0 bits (92), Expect = 0.004 Identities = 14/51 (27%), Positives = 31/51 (60%) Frame = +1 Query: 361 IFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVFDAEK 513 I++G +P AL + + +++FS+FG V + T S+G+ ++ F+ ++ Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDE 93 Score = 30.0 bits (66), Expect = 4.1 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = +1 Query: 67 KQQDGA-SAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIMKERHTQKPRGFGFITY 237 K Q GA S ++IG + R +EYF ++G + + + + T +G+ ++ + Sbjct: 32 KSQVGAVSPGVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 40.0 bits (92), Expect = 0.004 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 2/126 (1%) Frame = +1 Query: 10 KRPLRPSLPQPPA*GSGEMKQQDGASAAKMFIGGLSRQTSMGTFKEYFGKYGEIVDAVIM 189 ++P L + P + ++ +A++F+ LS +T + F +G+I + + Sbjct: 268 EKPAESDLTKAPTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVA 327 Query: 190 KERHTQKPRGFGFITYSDPAIVDRVIEDNHVIDGK--QVEIKRTIPKGAAPLKDFKTKKI 363 + +GF ++ Y+DP D +E +DGK Q + +P A+ K +K + Sbjct: 328 FDTRFTTSKGFAYVQYADP---DAAVEAYRNLDGKIFQGRLLHILP--ASQKKTYKLDEH 382 Query: 364 FVGGLP 381 + LP Sbjct: 383 ELSKLP 388 Score = 32.7 bits (73), Expect = 0.64 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = +1 Query: 358 KIFVGGLPTALRDDEFKDFFSKFGKVVEHEIICDHSTNRSRGFGFIVF 501 ++FV L ++ E + FS FGK+ E + D S+GF ++ + Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQY 343 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,069,375 Number of Sequences: 219361 Number of extensions: 1947518 Number of successful extensions: 6974 Number of sequences better than 10.0: 405 Number of HSP's better than 10.0 without gapping: 6042 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6706 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
