ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags34e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACON_GRAVE (P49609) Aconitate hydratase, mitochondrial precursor... 32 1.6
2SYV_ZYMMO (Q5NLA8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 30 6.0
3Y583_THET8 (P68591) UPF0340 protein TTHA0583 (TT1679) 30 6.0
4Y214_THET2 (Q72L49) UPF0340 protein TT_C0214 30 6.0
5WNT5B_ORYLA (O42122) Protein Wnt-5b precursor 29 7.9
6CSX2_SCHPO (Q9UUE2) Protein csx2 29 7.9
7HYLP2_BPH45 (Q54699) Hyaluronoglucosaminidase (EC 3.2.1.35) (Hya... 29 7.9
8HAL3A_ARATH (Q9SWE5) Phosphopantothenoylcysteine decarboxylase (... 29 7.9

>ACON_GRAVE (P49609) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)|
           (Citrate hydro-lyase) (Aconitase)
          Length = 779

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -3

Query: 523 IEGADAADLVVPKPFGLPWTFCEAPKITGIRRTPRL 416
           + GADA D++V    GLPW   +APK+ G++ T +L
Sbjct: 206 VGGADAVDVMV----GLPWEL-KAPKVIGVKLTGKL 236



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>SYV_ZYMMO (Q5NLA8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 884

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 7   LVKYKHHFVVSGGS--FMWRS---LQRLEFQHSLPFPDLYLH 117
           L +Y +  ++SG    F W +   +Q L F   +PFP LYLH
Sbjct: 479 LGRYPNDVLISGFDILFFWDARMIMQGLHFMKDVPFPKLYLH 520



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>Y583_THET8 (P68591) UPF0340 protein TTHA0583 (TT1679)|
          Length = 196

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 276 LPVRLSTNRITELVQLRDITRPVILAGSKASVTQAMQRAERYRTELLKR 422
           +P+RLS  +I E V L   TRP ++ G++A  T         R E+LK+
Sbjct: 148 VPLRLSVRKIGEAVLLAAKTRPKLVGGARAVYT---------REEMLKK 187



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>Y214_THET2 (Q72L49) UPF0340 protein TT_C0214|
          Length = 196

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 276 LPVRLSTNRITELVQLRDITRPVILAGSKASVTQAMQRAERYRTELLKR 422
           +P+RLS  +I E V L   TRP ++ G++A  T         R E+LK+
Sbjct: 148 VPLRLSVRKIGEAVLLAAKTRPKLVGGARAVYT---------REEMLKK 187



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>WNT5B_ORYLA (O42122) Protein Wnt-5b precursor|
          Length = 371

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -3

Query: 289 RRTGNLERVSLREIFVICSSSFLFSQTNKATSTTIPPI------LMAAFPAVSRKSG 137
           RRTG++  + L   F+ C+S  L    N   S  + PI      ++ A P  S+ SG
Sbjct: 9   RRTGDVRHLLLAAAFLTCNSQLLLVDANSWWSLGLTPIQRPEMYIIGAQPLCSQLSG 65



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>CSX2_SCHPO (Q9UUE2) Protein csx2|
          Length = 870

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +3

Query: 219 NKKEEEQITNISRNETLSRLPVRLSTNRITELVQLRDITRPVILAGSKASVTQAMQRAER 398
           N     Q+ N+S++   S+       N   E +QLR+   P++    +  +T   Q    
Sbjct: 24  NDNASLQVHNVSKSPEYSKYSYSRKNNEPIEFIQLREEEGPIVKVEEEDGLTLRFQL--E 81

Query: 399 YRTELLKRGVLLIPVIFGAS 458
           +  +  KR V  +  ++G S
Sbjct: 82  FHAQEGKRDVTNLTCVYGTS 101



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>HYLP2_BPH45 (Q54699) Hyaluronoglucosaminidase (EC 3.2.1.35) (Hyaluronidase)|
          Length = 337

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 450 GASQKVQGKPKGFGTTRSAASAPSIGGDFEK 542
           G++ +++G  K  GT +     PSIG D++K
Sbjct: 210 GSAMQLRGSEKALGTLKITHENPSIGADYDK 240



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>HAL3A_ARATH (Q9SWE5) Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)|
           (Halotolerance protein Hal3a) (AtHal3a) (PPCDC) (AtCoaC)
          Length = 209

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/69 (28%), Positives = 36/69 (52%)
 Frame = +3

Query: 240 ITNISRNETLSRLPVRLSTNRITELVQLRDITRPVILAGSKASVTQAMQRAERYRTELLK 419
           I  +S N TL ++   L  N +T +++  D T+P+ +A +  ++       ER+   L +
Sbjct: 102 IAPLSAN-TLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDE 160

Query: 420 RGVLLIPVI 446
            G+ LIP I
Sbjct: 161 LGITLIPPI 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,143,889
Number of Sequences: 219361
Number of extensions: 1666361
Number of successful extensions: 4786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4780
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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