>PSD3_DAUCA (Q06364) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Nuclear antigen 21D7)
          Length = 489

 Score =  294 bits (752), Expect = 1e-79
 Identities = 149/190 (78%), Positives = 158/190 (83%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           ASRLY YYS  +ELT  LAEIRG LL LHR+ATL HDELGQET               DQ
Sbjct: 162 ASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQ 221

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPTAARGFRIQ 362
           AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKES LQAARKAP AA GFR+Q
Sbjct: 222 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESXLQAARKAPVAALGFRVQ 281

Query: 363 CNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTFS 542
           CNKWA++VRLLLGEIPERTVFMQKGM+ AL PYF LTNAVR+GDLE+FR VADKF STF+
Sbjct: 282 CNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFXLTNAVRIGDLELFRXVADKFASTFT 341

Query: 543 ADRTSNLIVR 572
           ADRT NLIVR
Sbjct: 342 ADRTHNLIVR 351

>PSD3_TOBAC (P93768) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Nuclear antigen 21D7)
          Length = 488

 Score =  290 bits (742), Expect = 2e-78
 Identities = 149/190 (78%), Positives = 159/190 (83%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           ASRLY YYS  +ELT  LAEIRG LL LHR+ATL HDELGQET               DQ
Sbjct: 161 ASRLYFYYSLCYELTGDLAEIRGYLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQ 220

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPTAARGFRIQ 362
           AEKLRSKAPRFEAHSNQQF RYLFYLGKIRTIQLEYTDAKESLLQAARKAP AA GFR+Q
Sbjct: 221 AEKLRSKAPRFEAHSNQQFSRYLFYLGKIRTIQLEYTDAKESLLQAARKAPQAALGFRVQ 280

Query: 363 CNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTFS 542
           CNKWAI+VRLLLGEIPERTVFMQKGM+ AL PYFELTNAVR+GDLE+FR VA+KF STFS
Sbjct: 281 CNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRKVAEKFSSTFS 340

Query: 543 ADRTSNLIVR 572
           +D T+NLIVR
Sbjct: 341 SDGTNNLIVR 350

>PSD31_ARATH (Q9LNU4) Probable 26S proteasome non-ATPase regulatory subunit 3a|
           (26S proteasome subunit S3-a)
          Length = 488

 Score =  284 bits (726), Expect = 1e-76
 Identities = 146/190 (76%), Positives = 154/190 (81%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           ASRLY YYS  +E T  LAEIRGTLL LH  ATL HDELGQET               DQ
Sbjct: 161 ASRLYFYYSLSYEQTGDLAEIRGTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQ 220

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPTAARGFRIQ 362
           AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP AA GFRIQ
Sbjct: 221 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQ 280

Query: 363 CNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTFS 542
           CNKWAILVRLLLGEIPER++F QKGM+ AL PYFELTNAVR+GDLE+FR V +KF  TF+
Sbjct: 281 CNKWAILVRLLLGEIPERSIFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFA 340

Query: 543 ADRTSNLIVR 572
            DRT NLIVR
Sbjct: 341 QDRTHNLIVR 350

>PSD32_ARATH (Q9LQR8) Probable 26S proteasome non-ATPase regulatory subunit 3b|
           (26S proteasome subunit S3-b)
          Length = 487

 Score =  280 bits (715), Expect = 3e-75
 Identities = 141/190 (74%), Positives = 153/190 (80%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           AS+LY YYS  +ELTN LAEIR TLL LH  ATL HDELGQET               DQ
Sbjct: 160 ASKLYFYYSLSYELTNDLAEIRSTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQ 219

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPTAARGFRIQ 362
           AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP A+ GFRIQ
Sbjct: 220 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQ 279

Query: 363 CNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTFS 542
           CNKWAI+VRLLLGEIPER++F QKGM+  L PYFELTNAVR+GDLE+F  + +KF  TF+
Sbjct: 280 CNKWAIIVRLLLGEIPERSIFTQKGMEKTLRPYFELTNAVRIGDLELFGKIQEKFAKTFA 339

Query: 543 ADRTSNLIVR 572
            DRT NLIVR
Sbjct: 340 EDRTHNLIVR 349

>PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit S3) (Proteasome subunit
           p58)
          Length = 534

 Score =  146 bits (368), Expect = 5e-35
 Identities = 84/191 (43%), Positives = 112/191 (58%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           A++ Y Y++ V+E  + L  +R  L    R ATL HD  GQ T               DQ
Sbjct: 207 AAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQ 266

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPT-AARGFRI 359
           AEKL SK+   E  +N ++ RYL+Y G+I+ IQLEY++A+ ++  A RKAP   A GF+ 
Sbjct: 267 AEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQ 326

Query: 360 QCNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTF 539
             +K  I+V LLLGEIP+R  F Q  +K +L PYF LT AVR G+L  F  V D+FG  F
Sbjct: 327 TVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKF 386

Query: 540 SADRTSNLIVR 572
            AD T  LI+R
Sbjct: 387 QADGTYTLIIR 397

>PSD3_MOUSE (P14685) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit S3) (Proteasome subunit
           p58) (Transplantation antigen P91A) (Tum-P91A antigen)
          Length = 530

 Score =  144 bits (364), Expect = 1e-34
 Identities = 83/191 (43%), Positives = 111/191 (58%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           A++ Y Y++ V+E  + L  +R  L    R ATL HD  GQ T               DQ
Sbjct: 203 AAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQ 262

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPT-AARGFRI 359
           AEKL SK+   E  +N ++ RYL+Y G+I+ IQLEY++A+ ++  A RKAP   A GF+ 
Sbjct: 263 AEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQ 322

Query: 360 QCNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTF 539
             +K  I+V LLLGEIP+R  F Q  +K +L PYF LT AVR G+L  F  V D+FG  F
Sbjct: 323 TVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKF 382

Query: 540 SADRTSNLIVR 572
             D T  LI+R
Sbjct: 383 QTDGTYTLIIR 393

>PSD3_ANOST (Q9U5Z8) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Diphenol oxidase A2
           component) (DOX-A2)
          Length = 500

 Score =  144 bits (362), Expect = 2e-34
 Identities = 85/191 (44%), Positives = 112/191 (58%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           A++ Y Y+S V EL N L  IR  L    R ATL +D  GQ                 DQ
Sbjct: 174 AAKCYFYHSRVSELNNDLESIRSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQ 233

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPT-AARGFRI 359
           A+KL +K+   E  SN +  R+L+YLG+I+  +LEY+ A + L+QA RKAP  AA GFR 
Sbjct: 234 ADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQ 293

Query: 360 QCNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTF 539
              K  I+V LLLG+IPER VF Q  ++ +L PYF+LT AVR+G+L+ F  V + FG  F
Sbjct: 294 TVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLENFGEQF 353

Query: 540 SADRTSNLIVR 572
             D T  LI+R
Sbjct: 354 RQDHTFTLIIR 364

>PSD3_DROME (P25161) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Diphenol oxidase A2
           component) (DOX-A2)
          Length = 494

 Score =  142 bits (358), Expect = 7e-34
 Identities = 84/190 (44%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
 Frame = +3

Query: 6   SRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQA 185
           ++ Y Y+S V EL NSL  IR  L    R ATL +D  GQ                 DQA
Sbjct: 169 AKSYFYFSRVAELKNSLEGIRSFLHARLRTATLRNDFEGQAVLINCLLRNYLHYALYDQA 228

Query: 186 EKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPT-AARGFRIQ 362
           +KL  K+   E+ SN ++ R+L+YLG+I+  +LEY+DA + L+QA RK+P  AA GFR  
Sbjct: 229 DKLVKKSVYPESASNNEWARFLYYLGRIKAAKLEYSDAHKHLVQALRKSPQHAAIGFRQT 288

Query: 363 CNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTFS 542
             K  I+V LLLG IPER VF Q G++ +L  YF+LT AVR+G+L+ F  V  ++G  F 
Sbjct: 289 VQKLIIVVELLLGNIPERVVFRQAGLRQSLGAYFQLTQAVRLGNLKRFGDVVSQYGPKFQ 348

Query: 543 ADRTSNLIVR 572
            D T  LI+R
Sbjct: 349 LDHTFTLIIR 358

>PSD3_ANOGA (O61470) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Diphenol oxidase A2
           component) (DOX-A2)
          Length = 496

 Score =  141 bits (355), Expect = 2e-33
 Identities = 85/191 (44%), Positives = 111/191 (58%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           A++ Y Y+S V EL N L  IR  L    R ATL +D  GQ                 DQ
Sbjct: 170 AAKSYFYHSRVAELNNDLESIRSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQ 229

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPT-AARGFRI 359
           A+KL +K+   E  SN +  R+L+YLG+I+  +LEY+ A + L+QA RKAP  AA GFR 
Sbjct: 230 ADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQ 289

Query: 360 QCNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTF 539
              K  I+V LLLG+IPER VF Q  ++ +L PYF+LT AVR+G+L+ F  V   FG  F
Sbjct: 290 TVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLVNFGEQF 349

Query: 540 SADRTSNLIVR 572
             D T  LI+R
Sbjct: 350 RQDHTFTLIIR 360

>RPN3_SCHPO (O42897) Probable 26S proteasome regulatory subunit rpn3|
          Length = 497

 Score =  130 bits (327), Expect = 3e-30
 Identities = 79/192 (41%), Positives = 100/192 (52%), Gaps = 2/192 (1%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           A++LY YY    E  N   E R TLL +HR A+L HD   Q                 DQ
Sbjct: 169 AAKLYFYYILFFEKCNRSVECRNTLLSVHRTASLRHDSETQAMVLTLLLRNYIQFNLYDQ 228

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPTA--ARGFR 356
           A++L SK       SN    RY +YLG+IR IQL+YT A E L+ A RKAP    A  F 
Sbjct: 229 ADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHLVSAIRKAPNTVYAVQFL 288

Query: 357 IQCNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGST 536
               K  I+V+LL+GEIPER +F QK ++  L PY  ++ AVR+GDL  F     K+ + 
Sbjct: 289 EAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIGDLCAFTDALSKYEAE 348

Query: 537 FSADRTSNLIVR 572
           F  D    LI R
Sbjct: 349 FRFDGLYTLICR 360

>PSD3_CAEEL (Q04908) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit rpn-3)
          Length = 504

 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3   ASRLYSYYSYVHELTNSLAEIRGTLLGLHRMATLHHDELGQETXXXXXXXXXXXXXXXDQ 182
           A++   +   ++E    L + +G L    R ATL +    Q                   
Sbjct: 175 AAKTLYFLCVIYEREGRLFDHQGFLNSRLRTATLRNFSESQAVLICWLLRCYLINRQYQS 234

Query: 183 AEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPT-AARGFRI 359
           A  L SK    +  SN    RY++Y G+I+ +QL+Y  A    LQA RKAP   A GF+ 
Sbjct: 235 AAHLVSKVAFPDNASNNDLARYMYYQGRIKALQLDYNSAAGYFLQAQRKAPQEGAIGFKQ 294

Query: 360 QCNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEVFRVVADKFGSTF 539
              KW +++ LL GEIP+R+VF Q   +  L  Y +L+  VR GD+  F    ++F + F
Sbjct: 295 AVQKWVVVIGLLQGEIPDRSVFRQPIYRKCLAHYLDLSRGVRDGDVARFNHNLEQFKTQF 354

Query: 540 SADRTSNLIVR 572
            AD T  LIVR
Sbjct: 355 EADDTLTLIVR 365

>RPN3_YEAST (P40016) 26S proteasome regulatory subunit RPN3|
          Length = 523

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 68/203 (33%), Positives = 98/203 (48%), Gaps = 14/203 (6%)
 Frame = +3

Query: 6   SRLYSYYSYVHE-LTNSLAEI---------RGTLLGLHRMATLHHDELGQETXXXXXXXX 155
           ++L+ Y    HE L  S  EI         R T++   ++A+L HD   +          
Sbjct: 181 AKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRD 240

Query: 156 XXXXXXXDQAEKLRSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARK 329
                  D A    SK   P  +  S+ +  RY FYL KI  IQL+Y+ A E ++ A RK
Sbjct: 241 FLNNGEVDSASDFISKLEYPHTDVSSSLE-ARYFFYLSKINAIQLDYSTANEYIIAAIRK 299

Query: 330 APTAAR--GFRIQCNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEV 503
           AP  ++  GF  Q NK    ++LL+G+IPE + F Q  M+ +L PY+ LT AV++ DL+ 
Sbjct: 300 APHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLSDLKK 359

Query: 504 FRVVADKFGSTFSADRTSNLIVR 572
           F     K+      D T  L VR
Sbjct: 360 FTSTITKYKQLLLKDDTYQLCVR 382

>IFIT2_CRIGR (Q60462) Interferon-induced protein with tetratricopeptide repeats|
           2 (IFIT-2) (Interferon-induced 54 kDa protein) (IFI-54K)
           (CL-54 K)
          Length = 468

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
 Frame = +3

Query: 177 DQAEKLRSKAPRFEAHSNQQFCRYL---FYLGKIRTI----QLEYTDAKESLLQAA---- 323
           D+A +L S+A   E   N  +  Y    FY  K+  I    +    + +E LL+ A    
Sbjct: 259 DRAIQLLSQA--LELLPNNAYVYYYIGCFYRSKVLQIDSRRETSQNENREQLLKQAIYYL 316

Query: 324 RKAPTAARGFRIQCNKWAILVRLLLGEIPERTVFMQKGMKAALTPYFELTNAVRVGDLEV 503
           +KA       +  C+  A L  +L  +  E   + QKG K  LTP  +    +R G+ + 
Sbjct: 317 KKAEETKEMIKDSCSYLAHLY-VLAEQYKEADYYFQKGFKKELTPGLKQLLHLRYGNFQF 375

Query: 504 FRV 512
           F++
Sbjct: 376 FQM 378

>RECF_BRUSU (Q8G3E5) DNA replication and repair protein recF|
          Length = 384

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 211 VLKHIPISSSAAICSTWEKLEQFSSNTLMLKRASCKLHGKHPLQLVDSASS 363
           +++H P S  AA+CST E+        L   R + +L G  P+ L+D  ++
Sbjct: 283 IVQHRPKSMPAALCSTGEQKALLIGLILAHARLTAELSGMAPILLLDEIAA 333

>RECF_BRUME (Q8YED7) DNA replication and repair protein recF|
          Length = 384

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 211 VLKHIPISSSAAICSTWEKLEQFSSNTLMLKRASCKLHGKHPLQLVDSASS 363
           +++H P S  AA+CST E+        L   R + +L G  P+ L+D  ++
Sbjct: 283 IVQHRPKSMPAALCSTGEQKALLIGLILAHARLTAELSGMAPILLLDEIAA 333

>RECF_BRUAB (Q57G08) DNA replication and repair protein recF|
          Length = 384

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 211 VLKHIPISSSAAICSTWEKLEQFSSNTLMLKRASCKLHGKHPLQLVDSASS 363
           +++H P S  AA+CST E+        L   R + +L G  P+ L+D  ++
Sbjct: 283 IVQHRPKSMPAALCSTGEQKALLIGLILAHARLTAELSGMAPILLLDEIAA 333

>RECF_BRUA2 (Q2YPM3) DNA replication and repair protein recF|
          Length = 384

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 211 VLKHIPISSSAAICSTWEKLEQFSSNTLMLKRASCKLHGKHPLQLVDSASS 363
           +++H P S  AA+CST E+        L   R + +L G  P+ L+D  ++
Sbjct: 283 IVQHRPKSMPAALCSTGEQKALLIGLILAHARLTAELSGMAPILLLDEIAA 333

>CSN3_XENLA (Q7ZTN8) COP9 signalosome complex subunit 3 (Signalosome subunit 3)|
          Length = 423

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 18/195 (9%)
 Frame = +3

Query: 36  HELTNSLAEIRGTLLGL-------------HRMATLHHDELGQETXXXXXXXXXXXXXXX 176
           H+LTN+L E +  L G+                 T  H +L Q +               
Sbjct: 105 HQLTNALVERKQPLRGICVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPALAYLDV 164

Query: 177 DQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPTAARGFR 356
           D  +  +       A+  + F  Y +Y G I T    +  A     QA      A     
Sbjct: 165 DMMDICKENG----AYDAKPFLCYYYYGGMIYTGLKNFERAMYFYEQAITTPAMAVSHIM 220

Query: 357 IQCNKWAILVRLLL-GEIPERTVFMQKGMKAALTP----YFELTNAVRVGDLEVFRVVAD 521
           ++  K  ILV L+L G++ +   +  + +   + P    Y EL       +    R +  
Sbjct: 221 LEAYKKYILVSLILHGKVQQLPKYTSQVVGRFIKPLSNAYHELAQVYSTNNPAELRNLVS 280

Query: 522 KFGSTFSADRTSNLI 566
           K   TF+ D    L+
Sbjct: 281 KHNETFTRDNNMGLV 295

>CAO_ARATH (Q9MBA1) Chlorophyllide a oxygenase, chloroplast precursor (EC|
           1.-.-.-) (Chlorophyll a oxygenase) (Chlorophyll b
           synthase)
          Length = 536

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -3

Query: 520 SATTLNTSRSPTRTAFVSSKYGVKAAFIPFCMKTVLSGISPKSS 389
           SA +L  S S TR++F+S K GVK  F  F +    SG+  K S
Sbjct: 9   SALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKS 52

>WDR8_HUMAN (Q9P2S5) WD-repeat protein 8|
          Length = 460

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 23/79 (29%), Positives = 31/79 (39%)
 Frame = +1

Query: 55  LLKFVELSLGCTGWQLCTMMSLGRKLFLTCFFAITCTTTYMTRQKNLGQRHRVLKHIPIS 234
           +L   E  L  T W LCT      K    C   IT T     R   L +R     ++ I 
Sbjct: 106 ILNTTEFHLRITVWSLCTKSVSYIKYPKACLQGITFTRD--GRYMALAERRDCKDYVSIF 163

Query: 235 SSAAICSTWEKLEQFSSNT 291
               +CS W+ L  F ++T
Sbjct: 164 ----VCSDWQLLRHFDTDT 178

>PYRD_THEMA (Q9WYG8) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 270

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = -3

Query: 508 LNTSRSPTRTAFVSSKYGVKAAFI----PFCMKTVLSGISPKSSLTSIAHLLHWMRNPRA 341
           LNT R     +F+ +K GV+  F+     F MKT   GI    +L +    LH+ ++   
Sbjct: 138 LNTLRKELPDSFLIAKVGVEGIFVEDAAEFVMKTGWDGI----TLVNTVRGLHFEKDTMI 193

Query: 340 AVGAFRAACKRLSLASVY 287
             G      K ++L +VY
Sbjct: 194 LGGLSGPVLKPIALRAVY 211

>LYNX1_MOUSE (Q9WVC2) Ly-6/neurotoxin-like protein 1 precursor (GC26)|
          Length = 116

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 487 TRTAFVSSKYGVKAAFIPFCMKTVLSGISPKSSLTS 380
           TRT F   +  V+ + +P C +TV  G S  +S TS
Sbjct: 49  TRTYFTPYRMKVRKSCVPSCFETVYDGYSKHASATS 84

>SMOO_HUMAN (P53814) Smoothelin|
          Length = 917

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = -2

Query: 530 PKFICNNSEHF*VPNANSICKLKI-WCQSRLHSFLHEN----SSLW 408
           P+     S  F VPNANSI ++ + WC+++   + H +    SS W
Sbjct: 783 PRAAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSW 828

>CARB_NEIGO (Q59599) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1071

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 300 KESLLQAARKAPTAARGFRIQCNKWAILVRLLLGEIPERTVFMQKGMKAALTP 458
           +ES  +A R   T   GF     +   + R L    PER +F+ K  +AA TP
Sbjct: 392 QESFQKALRGLETGLCGFNPARRRQTEIRRELANPGPERMLFVGKAFRAAFTP 444


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,712,838
Number of Sequences: 219361
Number of extensions: 1477929
Number of successful extensions: 4089
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4075
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)