| Clone Name | bags33n02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ491323.1|OSA491323 Oryza sativa (japonica cultivar-group) mRNA for putative beta-glycosidase (sfr2 gene) Length = 1944 Score = 630 bits (318), Expect = e-177 Identities = 533/605 (88%) Strand = Plus / Plus Query: 19 gttttccgcatgggtgtagactggacgagaataatgcctaaggaaccaactgaagatttc 78 |||||||||||||| ||||| ||| | || |||||||| |||||||||| ||||| || Sbjct: 619 gttttccgcatgggggtagattgggcaaggttaatgcctgaggaaccaaccgaagaattg 678 Query: 79 aagagcacggttaattttgctgcacttgagcggtatagatggatcattcaaagagttcgt 138 |||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 679 aagagctcagttaattttgcagcacttgagcggtatagatggatcattcaaagggttcgc 738 Query: 139 gagcatgggatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctggg 198 || |||| ||||||||||||||||| | ||||||||||| ||||||||||||||||| Sbjct: 739 gaatatggaatgaaagtaatgcttactctgtttcatcactcacttccaccttgggctgga 798 Query: 199 gaatatggtgggtggaagatggaaaaaaccgttaattatttcatggattttgtaaggctt 258 ||||||| |||||||||||||||||||| || | ||||||||||||||||| |||||| Sbjct: 799 aaatatggcgggtggaagatggaaaaaactgtcacctatttcatggattttgtgaggctt 858 Query: 259 gttgttgatcgtgtgtcagatttagtggactactgggtgattttcaatgaaccacatgtg 318 |||||||||||||| || |||||||||||||||||||||||||||||||||| || || Sbjct: 859 gttgttgatcgtgtatccaatttagtggactactgggtgattttcaatgaacctcacgtt 918 Query: 319 tttgtgatgctaacttattgtgctggagcttggcctggtggagatcctaatgcaatngaa 378 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||| Sbjct: 919 tttgtgatgctaacttattgtgccggtgcttggcctggtggagaccctaatgcaattgaa 978 Query: 379 gtagcaacatctgctttaccaactggtgtatataatcaagctttgcattggatggctgtt 438 |||||||||||| || | |||||||||||||| ||||| |||||||||||||||||| || Sbjct: 979 gtagcaacatctactctgccaactggtgtatacaatcaggctttgcattggatggctatt 1038 Query: 439 gcacatgctgaagcttatgactacattcattcagaaagcaagaatgcaatgatgccaata 498 |||||| ||||||| ||||||||||| ||||| |||||||||| | || || ||||||| Sbjct: 1039 gcacattctgaagcctatgactacatacattcgaaaagcaagaacgaaaggaagccaata 1098 Query: 499 gttggtgtatcacatcatgtatcatttacacggccatatggtctatttgatgttgcggct 558 |||||||| |||| |||||||| |||||| |||||||||| |||||||||||||| ||| Sbjct: 1099 gttggtgttgcacaccatgtatcgtttacaaggccatatgggctatttgatgttgctgct 1158 Query: 559 gtcacaatagctaactcaatgaccctattcccttacatcgatagcatctgtgacaaattg 618 ||| | ||||||||||| ||||||| || |||||| | |||||||| ||||| |||||| Sbjct: 1159 gtcgcgctagctaactcattgaccctttttccttacgtggatagcatatgtgataaattg 1218 Query: 619 gactt 623 ||||| Sbjct: 1219 gactt 1223
>dbj|AK119461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E10, full insert sequence Length = 3007 Score = 615 bits (310), Expect = e-173 Identities = 531/605 (87%) Strand = Plus / Plus Query: 19 gttttccgcatgggtgtagactggacgagaataatgcctaaggaaccaactgaagatttc 78 |||||||||||||| ||||| ||| | || |||||||| |||||||||| ||||| || Sbjct: 694 gttttccgcatgggggtagattgggcaaggttaatgcctgaggaaccaaccgaagaattg 753 Query: 79 aagagcacggttaattttgctgcacttgagcggtatagatggatcattcaaagagttcgt 138 |||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 754 aagagctcagttaattttgcagcacttgagcggtatagatggatcattcaaagggttcgc 813 Query: 139 gagcatgggatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctggg 198 || |||| ||||||||||||||||| | ||||||||||| |||||||| |||||||| Sbjct: 814 gaatatggaatgaaagtaatgcttactctgtttcatcactcacttccaccctgggctgga 873 Query: 199 gaatatggtgggtggaagatggaaaaaaccgttaattatttcatggattttgtaaggctt 258 ||||||| |||||||||||||||||||| || | ||||||||||||||||| |||||| Sbjct: 874 aaatatggcgggtggaagatggaaaaaactgtcacctatttcatggattttgtgaggctt 933 Query: 259 gttgttgatcgtgtgtcagatttagtggactactgggtgattttcaatgaaccacatgtg 318 ||||||||| |||| || |||||||||||||||||||||||||||||||||| || || Sbjct: 934 gttgttgattgtgtatccaatttagtggactactgggtgattttcaatgaacctcacgtt 993 Query: 319 tttgtgatgctaacttattgtgctggagcttggcctggtggagatcctaatgcaatngaa 378 ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||| Sbjct: 994 tttgtgatgctaacttattgtgccggtgcttggcctggtggagaccctaatgcaattgaa 1053 Query: 379 gtagcaacatctgctttaccaactggtgtatataatcaagctttgcattggatggctgtt 438 |||||||||||| || | |||||||||||||| ||||| |||||||||||||||||| || Sbjct: 1054 gtagcaacatctactctgccaactggtgtatacaatcaggctttgcattggatggctatt 1113 Query: 439 gcacatgctgaagcttatgactacattcattcagaaagcaagaatgcaatgatgccaata 498 |||||| ||||||| ||||||||||| ||||| |||||||||| | || || ||||||| Sbjct: 1114 gcacattctgaagcctatgactacatacattcgaaaagcaagaacgaaaggaagccaata 1173 Query: 499 gttggtgtatcacatcatgtatcatttacacggccatatggtctatttgatgttgcggct 558 |||||||| |||| |||||||| |||||| |||||||||| |||||||||||||| ||| Sbjct: 1174 gttggtgttgcacaccatgtatcgtttacaaggccatatgggctatttgatgttgctgct 1233 Query: 559 gtcacaatagctaactcaatgaccctattcccttacatcgatagcatctgtgacaaattg 618 ||| | ||||||||||| ||||||| || |||||| | |||||||| ||||| |||||| Sbjct: 1234 gtcgcgctagctaactcattgaccctttttccttacgtggatagcatatgtgataaattg 1293 Query: 619 gactt 623 ||||| Sbjct: 1294 gactt 1298
>emb|AM238660.1| Zea mays mRNA for putative beta-glycosidase (sfr2 gene), from leaf tissue Length = 1977 Score = 484 bits (244), Expect = e-133 Identities = 513/603 (85%) Strand = Plus / Plus Query: 18 tgttttccgcatgggtgtagactggacgagaataatgcctaaggaaccaactgaagattt 77 ||||||||||||||| | || |||||||| ||||||| |||||||||| ||||| | Sbjct: 645 tgttttccgcatggggattgattggacgagggtaatgccgaaggaaccaatcgaagacct 704 Query: 78 caagagcacggttaattttgctgcacttgagcggtatagatggatcattcaaagagttcg 137 ||||||| | || ||||||||||| || |||||||||||||||||| | ||||| ||||| Sbjct: 705 caagagctcagtcaattttgctgcgctcgagcggtatagatggatcgtccaaagggttcg 764 Query: 138 tgagcatgggatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctgg 197 ||| |||| |||||||| |||||||| | ||||| |||||||||||||||||||| || Sbjct: 765 tgactatggaatgaaagtgatgcttacgctgtttcaccactcgcttccaccttgggccgg 824 Query: 198 ggaatatggtgggtggaagatggaaaaaaccgttaattatttcatggattttgtaaggct 257 |||||||| ||||||| |||||||||||| || || || || |||| ||||| ||||| Sbjct: 825 agaatatggcgggtggaggatggaaaaaactgtcaagtactttctggactttgtgaggct 884 Query: 258 tgttgttgatcgtgtgtcagatttagtggactactgggtgattttcaatgaaccacatgt 317 |||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||| Sbjct: 885 tgttgttgatcgcgtgtcagatttggtggactactgggtggttttcaatgaacctcatgt 944 Query: 318 gtttgtgatgctaacttattgtgctggagcttggcctggtggagatcctaatgcaatnga 377 |||||||||||| || |||||||| || |||||||||||||| || ||||||||||| || Sbjct: 945 gtttgtgatgctgacctattgtgccggtgcttggcctggtggtgaccctaatgcaatcga 1004 Query: 378 agtagcaacatctgctttaccaactggtgtatataatcaagctttgcattggatggctgt 437 ||||| || |||||||| || ||||||||||| || ||||| ||||||||||||||| | Sbjct: 1005 ggtagcgacgtctgctttgccgactggtgtatacaaccaagcattgcattggatggctat 1064 Query: 438 tgcacatgctgaagcttatgactacattcattcagaaagcaagaatgcaatgatgccaat 497 ||||||||| ||||| || || ||||| |||||| || || | | | || || ||| | Sbjct: 1065 tgcacatgcggaagcctacgattacatacattcaaaaggcgaaagtaaaaggaagccggt 1124 Query: 498 agttggtgtatcacatcatgtatcatttacacggccatatggtctatttgatgttgcggc 557 |||||||| | |||||||||||||||||||| || |||||||| ||||||||||| || Sbjct: 1125 cgttggtgtcgctcatcatgtatcatttacacgtccctatggtctgtttgatgttgccgc 1184 Query: 558 tgtcacaatagctaactcaatgaccctattcccttacatcgatagcatctgtgacaaatt 617 ||||||| | ||||| || ||||||| |||||||||||||||||||| ||||||||||| Sbjct: 1185 tgtcacactggctaattctttgacccttttcccttacatcgatagcatatgtgacaaatt 1244 Query: 618 gga 620 ||| Sbjct: 1245 gga 1247
>dbj|AK067619.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110O12, full insert sequence Length = 2820 Score = 404 bits (204), Expect = e-109 Identities = 329/371 (88%) Strand = Plus / Plus Query: 253 aggcttgttgttgatcgtgtgtcagatttagtggactactgggtgattttcaatgaacca 312 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 942 aggcttgttgttgatcgtgtatccaatttagtggactactgggtgattttcaatgaacct 1001 Query: 313 catgtgtttgtgatgctaacttattgtgctggagcttggcctggtggagatcctaatgca 372 || || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 1002 cacgtttttgtgatgctaacttattgtgccggtgcttggcctggtggagaccctaatgca 1061 Query: 373 atngaagtagcaacatctgctttaccaactggtgtatataatcaagctttgcattggatg 432 || ||||||||||||||| || | |||||||||||||| ||||| ||||||||||||||| Sbjct: 1062 attgaagtagcaacatctactctgccaactggtgtatacaatcaggctttgcattggatg 1121 Query: 433 gctgttgcacatgctgaagcttatgactacattcattcagaaagcaagaatgcaatgatg 492 ||| |||||||| ||||||| ||||||||||| ||||| |||||||||| | || || | Sbjct: 1122 gctattgcacattctgaagcctatgactacatacattcgaaaagcaagaacgaaaggaag 1181 Query: 493 ccaatagttggtgtatcacatcatgtatcatttacacggccatatggtctatttgatgtt 552 |||||||||||||| |||| |||||||| |||||| |||||||||| |||||||||||| Sbjct: 1182 ccaatagttggtgttgcacaccatgtatcgtttacaaggccatatgggctatttgatgtt 1241 Query: 553 gcggctgtcacaatagctaactcaatgaccctattcccttacatcgatagcatctgtgac 612 || |||||| | ||||||||||| ||||||| || |||||| | |||||||| ||||| Sbjct: 1242 gctgctgtcgcgctagctaactcattgaccctttttccttacgtggatagcatatgtgat 1301 Query: 613 aaattggactt 623 ||||||||||| Sbjct: 1302 aaattggactt 1312 Score = 232 bits (117), Expect = 1e-57 Identities = 204/233 (87%) Strand = Plus / Plus Query: 19 gttttccgcatgggtgtagactggacgagaataatgcctaaggaaccaactgaagatttc 78 |||||||||||||| ||||| ||| | || |||||||| |||||||||| ||||| || Sbjct: 694 gttttccgcatgggggtagattgggcaaggttaatgcctgaggaaccaaccgaagaattg 753 Query: 79 aagagcacggttaattttgctgcacttgagcggtatagatggatcattcaaagagttcgt 138 |||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 754 aagagctcagttaattttgcagcacttgagcggtatagatggatcattcaaagggttcgc 813 Query: 139 gagcatgggatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctggg 198 || |||| ||||||||||||||||| | ||||||||||| ||||||||||||||||| Sbjct: 814 gaatatggaatgaaagtaatgcttactctgtttcatcactcacttccaccttgggctgga 873 Query: 199 gaatatggtgggtggaagatggaaaaaaccgttaattatttcatggattttgt 251 ||||||| |||||||||||||||||||| || | ||||||||||||||||| Sbjct: 874 aaatatggcgggtggaagatggaaaaaactgtcacctatttcatggattttgt 926
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence Length = 146742 Score = 283 bits (143), Expect = 3e-73 Identities = 199/218 (91%) Strand = Plus / Minus Query: 253 aggcttgttgttgatcgtgtgtcagatttagtggactactgggtgattttcaatgaacca 312 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 81138 aggcttgttgttgatcgtgtatccaatttagtggactactgggtgattttcaatgaacct 81079 Query: 313 catgtgtttgtgatgctaacttattgtgctggagcttggcctggtggagatcctaatgca 372 || || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 81078 cacgtttttgtgatgctaacttattgtgccggtgcttggcctggtggagaccctaatgca 81019 Query: 373 atngaagtagcaacatctgctttaccaactggtgtatataatcaagctttgcattggatg 432 || ||||||||||||||| || | |||||||||||||| ||||| ||||||||||||||| Sbjct: 81018 attgaagtagcaacatctactctgccaactggtgtatacaatcaggctttgcattggatg 80959 Query: 433 gctgttgcacatgctgaagcttatgactacattcattc 470 ||| |||||||| ||||||| ||||||||||| ||||| Sbjct: 80958 gctattgcacattctgaagcctatgactacatacattc 80921 Score = 192 bits (97), Expect = 1e-45 Identities = 148/165 (89%) Strand = Plus / Minus Query: 87 ggttaattttgctgcacttgagcggtatagatggatcattcaaagagttcgtgagcatgg 146 |||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||| Sbjct: 81401 ggttaattttgcagcacttgagcggtatagatggatcattcaaagggttcgcgaatatgg 81342 Query: 147 gatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctggggaatatgg 206 ||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||||| Sbjct: 81341 aatgaaagtaatgcttactctgtttcatcactcacttccaccttgggctggaaaatatgg 81282 Query: 207 tgggtggaagatggaaaaaaccgttaattatttcatggattttgt 251 |||||||||||||||||||| || | ||||||||||||||||| Sbjct: 81281 cgggtggaagatggaaaaaactgtcacctatttcatggattttgt 81237 Score = 129 bits (65), Expect = 1e-26 Identities = 128/149 (85%) Strand = Plus / Minus Query: 475 agcaagaatgcaatgatgccaatagttggtgtatcacatcatgtatcatttacacggcca 534 |||||||| | || || ||||||||||||||| |||| |||||||| |||||| ||||| Sbjct: 80793 agcaagaacgaaaggaagccaatagttggtgttgcacaccatgtatcgtttacaaggcca 80734 Query: 535 tatggtctatttgatgttgcggctgtcacaatagctaactcaatgaccctattcccttac 594 ||||| |||||||||||||| |||||| | ||||||||||| ||||||| || |||||| Sbjct: 80733 tatgggctatttgatgttgctgctgtcgcgctagctaactcattgaccctttttccttac 80674 Query: 595 atcgatagcatctgtgacaaattggactt 623 | |||||||| ||||| ||||||||||| Sbjct: 80673 gtggatagcatatgtgataaattggactt 80645 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 19 gttttccgcatgggtgtagactggacgagaataatgcctaaggaaccaactgaagatttc 78 |||||||||||||| ||||| ||| | || |||||||| |||||||||| ||||| || Sbjct: 81578 gttttccgcatgggggtagattgggcaaggttaatgcctgaggaaccaaccgaagaattg 81519 Query: 79 aagagc 84 |||||| Sbjct: 81518 aagagc 81513
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 283 bits (143), Expect = 3e-73 Identities = 199/218 (91%) Strand = Plus / Minus Query: 253 aggcttgttgttgatcgtgtgtcagatttagtggactactgggtgattttcaatgaacca 312 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 26776508 aggcttgttgttgatcgtgtatccaatttagtggactactgggtgattttcaatgaacct 26776449 Query: 313 catgtgtttgtgatgctaacttattgtgctggagcttggcctggtggagatcctaatgca 372 || || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 26776448 cacgtttttgtgatgctaacttattgtgccggtgcttggcctggtggagaccctaatgca 26776389 Query: 373 atngaagtagcaacatctgctttaccaactggtgtatataatcaagctttgcattggatg 432 || ||||||||||||||| || | |||||||||||||| ||||| ||||||||||||||| Sbjct: 26776388 attgaagtagcaacatctactctgccaactggtgtatacaatcaggctttgcattggatg 26776329 Query: 433 gctgttgcacatgctgaagcttatgactacattcattc 470 ||| |||||||| ||||||| ||||||||||| ||||| Sbjct: 26776328 gctattgcacattctgaagcctatgactacatacattc 26776291 Score = 192 bits (97), Expect = 1e-45 Identities = 148/165 (89%) Strand = Plus / Minus Query: 87 ggttaattttgctgcacttgagcggtatagatggatcattcaaagagttcgtgagcatgg 146 |||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||| Sbjct: 26776771 ggttaattttgcagcacttgagcggtatagatggatcattcaaagggttcgcgaatatgg 26776712 Query: 147 gatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctggggaatatgg 206 ||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||||| Sbjct: 26776711 aatgaaagtaatgcttactctgtttcatcactcacttccaccttgggctggaaaatatgg 26776652 Query: 207 tgggtggaagatggaaaaaaccgttaattatttcatggattttgt 251 |||||||||||||||||||| || | ||||||||||||||||| Sbjct: 26776651 cgggtggaagatggaaaaaactgtcacctatttcatggattttgt 26776607 Score = 129 bits (65), Expect = 1e-26 Identities = 128/149 (85%) Strand = Plus / Minus Query: 475 agcaagaatgcaatgatgccaatagttggtgtatcacatcatgtatcatttacacggcca 534 |||||||| | || || ||||||||||||||| |||| |||||||| |||||| ||||| Sbjct: 26776163 agcaagaacgaaaggaagccaatagttggtgttgcacaccatgtatcgtttacaaggcca 26776104 Query: 535 tatggtctatttgatgttgcggctgtcacaatagctaactcaatgaccctattcccttac 594 ||||| |||||||||||||| |||||| | ||||||||||| ||||||| || |||||| Sbjct: 26776103 tatgggctatttgatgttgctgctgtcgcgctagctaactcattgaccctttttccttac 26776044 Query: 595 atcgatagcatctgtgacaaattggactt 623 | |||||||| ||||| ||||||||||| Sbjct: 26776043 gtggatagcatatgtgataaattggactt 26776015 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 19 gttttccgcatgggtgtagactggacgagaataatgcctaaggaaccaactgaagatttc 78 |||||||||||||| ||||| ||| | || |||||||| |||||||||| ||||| || Sbjct: 26776948 gttttccgcatgggggtagattgggcaaggttaatgcctgaggaaccaaccgaagaattg 26776889 Query: 79 aagagc 84 |||||| Sbjct: 26776888 aagagc 26776883
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 283 bits (143), Expect = 3e-73 Identities = 199/218 (91%) Strand = Plus / Minus Query: 253 aggcttgttgttgatcgtgtgtcagatttagtggactactgggtgattttcaatgaacca 312 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 27103743 aggcttgttgttgatcgtgtatccaatttagtggactactgggtgattttcaatgaacct 27103684 Query: 313 catgtgtttgtgatgctaacttattgtgctggagcttggcctggtggagatcctaatgca 372 || || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 27103683 cacgtttttgtgatgctaacttattgtgccggtgcttggcctggtggagaccctaatgca 27103624 Query: 373 atngaagtagcaacatctgctttaccaactggtgtatataatcaagctttgcattggatg 432 || ||||||||||||||| || | |||||||||||||| ||||| ||||||||||||||| Sbjct: 27103623 attgaagtagcaacatctactctgccaactggtgtatacaatcaggctttgcattggatg 27103564 Query: 433 gctgttgcacatgctgaagcttatgactacattcattc 470 ||| |||||||| ||||||| ||||||||||| ||||| Sbjct: 27103563 gctattgcacattctgaagcctatgactacatacattc 27103526 Score = 192 bits (97), Expect = 1e-45 Identities = 148/165 (89%) Strand = Plus / Minus Query: 87 ggttaattttgctgcacttgagcggtatagatggatcattcaaagagttcgtgagcatgg 146 |||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||| Sbjct: 27104006 ggttaattttgcagcacttgagcggtatagatggatcattcaaagggttcgcgaatatgg 27103947 Query: 147 gatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctggggaatatgg 206 ||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||||| Sbjct: 27103946 aatgaaagtaatgcttactctgtttcatcactcacttccaccttgggctggaaaatatgg 27103887 Query: 207 tgggtggaagatggaaaaaaccgttaattatttcatggattttgt 251 |||||||||||||||||||| || | ||||||||||||||||| Sbjct: 27103886 cgggtggaagatggaaaaaactgtcacctatttcatggattttgt 27103842 Score = 129 bits (65), Expect = 1e-26 Identities = 128/149 (85%) Strand = Plus / Minus Query: 475 agcaagaatgcaatgatgccaatagttggtgtatcacatcatgtatcatttacacggcca 534 |||||||| | || || ||||||||||||||| |||| |||||||| |||||| ||||| Sbjct: 27103398 agcaagaacgaaaggaagccaatagttggtgttgcacaccatgtatcgtttacaaggcca 27103339 Query: 535 tatggtctatttgatgttgcggctgtcacaatagctaactcaatgaccctattcccttac 594 ||||| |||||||||||||| |||||| | ||||||||||| ||||||| || |||||| Sbjct: 27103338 tatgggctatttgatgttgctgctgtcgcgctagctaactcattgaccctttttccttac 27103279 Query: 595 atcgatagcatctgtgacaaattggactt 623 | |||||||| ||||| ||||||||||| Sbjct: 27103278 gtggatagcatatgtgataaattggactt 27103250 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Minus Query: 19 gttttccgcatgggtgtagactggacgagaataatgcctaaggaaccaactgaagatttc 78 |||||||||||||| ||||| ||| | || |||||||| |||||||||| ||||| || Sbjct: 27104183 gttttccgcatgggggtagattgggcaaggttaatgcctgaggaaccaaccgaagaattg 27104124 Query: 79 aagagc 84 |||||| Sbjct: 27104123 aagagc 27104118
>emb|AM238658.1| Glycine max mRNA for putative beta-glycosidase (sfr2 gene), from leaf tissue Length = 1914 Score = 131 bits (66), Expect = 3e-27 Identities = 182/218 (83%), Gaps = 2/218 (0%) Strand = Plus / Plus Query: 143 atgggatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctggggaat 202 |||| |||||||| ||||| || | |||||||||||||||||||| |||||||| || | Sbjct: 698 atggaatgaaagtgatgctcactctttttcatcactcgcttccaccctgggctggtgagt 757 Query: 203 atggtgggtggaagatggaaaaaaccgttaattatttcatggattttgtaaggcttgttg 262 |||| || |||||| ||||||| || || ||||||||||||| ||| |||||||||| Sbjct: 758 atggaggttggaagctggaaaagacagtggattatttcatggactttaccaggcttgttg 817 Query: 263 ttgatcgtgtgtcagatttagtggactactgggtgattttcaatgaaccacatgtgtt-t 321 | || |||| |||||||| || ||||||||||| | || ||||| || ||||| || | Sbjct: 818 tagacagtgtctcagatttggtagactactgggtaacatttaatgagccccatgtcttct 877 Query: 322 gtgatgctaacttattgtgctggagcttggcctggtgg 359 || ||||| ||||||||||||||||||||||||||||| Sbjct: 878 gt-atgcttacttattgtgctggagcttggcctggtgg 914
>dbj|AP006434.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36O22, TM0333b, complete sequence Length = 74925 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 143 atgggatgaaagtaatgcttaccttatttcatcactcgcttccaccttgggctggggaat 202 |||||||||| || ||||| || | ||||||||||| ||||||||||||||||| || | Sbjct: 53060 atgggatgaaggtgatgctcactctttttcatcactcacttccaccttgggctggtgagt 53001 Query: 203 atggtgggtggaagatggaaaaaaccgttaattatttcatgga 245 |||| || |||||| ||||||| || || |||| |||||||| Sbjct: 53000 atggaggttggaagctggaaaagacagtggattacttcatgga 52958 Score = 40.1 bits (20), Expect = 8.5 Identities = 44/52 (84%) Strand = Plus / Minus Query: 509 cacatcatgtatcatttacacggccatatggtctatttgatgttgcggctgt 560 |||||||||| ||||||| || || ||||| || ||||||||||| ||||| Sbjct: 51510 cacatcatgtgtcatttatgcgaccgtatgggctgtttgatgttgctgctgt 51459
>emb|AM238661.1| Pinus taeda mRNA for putative beta-glycosidase (sfr2 gene), from pine needle tissue Length = 2001 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Plus Query: 169 tttcatcactcgcttccaccttgggctggggaatatggtgggtggaagatggaaaaaacc 228 ||||||||||| |||||||||||||||| | |||||| || ||||| | || ||||| Sbjct: 727 tttcatcactctcttccaccttgggctgcagcatatggaggatggaaagttgagaaaact 786 Query: 229 gttaattatttcatgga 245 || ||||||||| |||| Sbjct: 787 gtcaattatttcttgga 803 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 16 actgttttccgcatgggtgtagactggacgagaataatgcct 57 ||||||||||| ||||| || |||||||| ||||| |||||| Sbjct: 574 actgttttccgtatgggagtggactggaccagaattatgcct 615 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 304 aatgaaccacatgtgtttgtgatgctaacttattgtgctggagcttggcctgg 356 ||||| |||||||||||| ||||| || || ||||| |||||||||||||| Sbjct: 862 aatgagccacatgtgtttaccatgctgacatactgtgcgggagcttggcctgg 914
>gb|AC150307.3| Rhinolophus ferrumequinum clone VMRC7-71A7, complete sequence Length = 137605 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gtgagcatgggatgaaagtaa 157 ||||||||||||||||||||| Sbjct: 27407 gtgagcatgggatgaaagtaa 27427
>gb|AC158614.5| Mus musculus 10 BAC RP23-76C5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 223468 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 482 atgcaatgatgccaatagttg 502 ||||||||||||||||||||| Sbjct: 93221 atgcaatgatgccaatagttg 93201
>emb|BX571873.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 15/17 Length = 349107 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 155 taatgcttaccttatttcatcactc 179 ||||||||||||||||| ||||||| Sbjct: 251385 taatgcttaccttattttatcactc 251409
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gtgagcatgggatgaaagtaa 157 ||||||||||||||||||||| Sbjct: 1646194 gtgagcatgggatgaaagtaa 1646214
>ref|NM_119795.2| Arabidopsis thaliana ATP binding AT4G36270 mRNA, complete cds Length = 1878 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tggtgggtggaagatggaaa 223 |||||||||||||||||||| Sbjct: 806 tggtgggtggaagatggaaa 787
>gb|AC121942.2| Mus musculus chromosome 13 clone RP24-211D12, complete sequence Length = 164932 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 catctgctttaccaactggt 405 |||||||||||||||||||| Sbjct: 42114 catctgctttaccaactggt 42133
>emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, complete sequence Length = 39483 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 acattcattcagaaagcaag 480 |||||||||||||||||||| Sbjct: 3391 acattcattcagaaagcaag 3372
>emb|BX936315.11| Zebrafish DNA sequence from clone CH211-37K10 in linkage group 17, complete sequence Length = 56864 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ttaattatttcatggatttt 249 |||||||||||||||||||| Sbjct: 39227 ttaattatttcatggatttt 39208
>gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, complete sequence Length = 171002 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ttaattatttcatggatttt 249 |||||||||||||||||||| Sbjct: 80247 ttaattatttcatggatttt 80228
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85 Length = 198750 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tggtgggtggaagatggaaa 223 |||||||||||||||||||| Sbjct: 48930 tggtgggtggaagatggaaa 48949 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tggtgggtggaagatggaaa 223 |||||||||||||||||||| Sbjct: 44704 tggtgggtggaagatggaaa 44723
>emb|AL022141.1|ATF23E13 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project) Length = 94695 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tggtgggtggaagatggaaa 223 |||||||||||||||||||| Sbjct: 72209 tggtgggtggaagatggaaa 72228 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tggtgggtggaagatggaaa 223 |||||||||||||||||||| Sbjct: 67983 tggtgggtggaagatggaaa 68002
>gb|AC009461.5|AC009461 Drosophila melanogaster, chromosome 3R, region 90B-90C, BAC clone BACR11L13, complete sequence Length = 171612 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 cacatcatgtatcatttaca 528 |||||||||||||||||||| Sbjct: 157647 cacatcatgtatcatttaca 157628
>gb|AC009742.4|AC009742 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone BACR21K03, complete sequence Length = 178100 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 cacatcatgtatcatttaca 528 |||||||||||||||||||| Sbjct: 92160 cacatcatgtatcatttaca 92141
>gb|AC093113.4| Homo sapiens BAC clone RP11-789A18 from 2, complete sequence Length = 175556 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 agtggactactgggtgattt 301 |||||||||||||||||||| Sbjct: 89143 agtggactactgggtgattt 89124
>gb|AC153151.4| Mus musculus BAC clone RP23-82K6 from chromosome 13, complete sequence Length = 164635 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 catctgctttaccaactggt 405 |||||||||||||||||||| Sbjct: 129364 catctgctttaccaactggt 129383
>gb|AE005137.1| Halobacterium sp. NRC-1 section 168 of 170 of the complete genome Length = 10467 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aggaaaccggcgttactgtt 21 |||||||||||||||||||| Sbjct: 4652 aggaaaccggcgttactgtt 4671
>gb|AE003718.3| Drosophila melanogaster chromosome 3R, section 56 of 118 of the complete sequence Length = 253101 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 cacatcatgtatcatttaca 528 |||||||||||||||||||| Sbjct: 192304 cacatcatgtatcatttaca 192285
>emb|AL358832.3|CNS05TED Human chromosome 14 DNA sequence BAC R-767H2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177945 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tacattcattcagaaagcaa 479 |||||||||||||||||||| Sbjct: 119930 tacattcattcagaaagcaa 119911
>gb|AC171338.5| Rhesus Macaque BAC CH250-526I15 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 165606 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 tggaagatggaaaaaaccgttaat 234 ||||| |||||||||||||||||| Sbjct: 891 tggaaaatggaaaaaaccgttaat 914
>emb|AL669845.9| Mouse DNA sequence from clone RP23-43C21 on chromosome 11, complete sequence Length = 243954 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cttccaccttgggctgggga 200 |||||||||||||||||||| Sbjct: 17171 cttccaccttgggctgggga 17190 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,437,435 Number of Sequences: 3902068 Number of extensions: 5437435 Number of successful extensions: 94647 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94514 Number of HSP's gapped (non-prelim): 132 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)