>SRB8_YEAST (P25648) Suppressor of RNA polymerase B SRB8|
          Length = 1427

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
 Frame = -3

Query: 467  VSIYSLKKNASEAMGHLENMPEYACMLQRKLKTIISI*VQYVHCSNI*HTH-S*SFPKIQ 291
            + +YS+  N+++A+G   N PE   + Q  ++ ++       H S I  T+ S  F K +
Sbjct: 827  LKVYSMINNSNQAVGQTWNFPE---VFQVNIRFLL-------HNSEIIDTNTSKQFQKAR 876

Query: 290  NHKYF-----IRTWNRFMNKIIHGS*FPNTNRLTPVLNHNLLTISVSNS 159
            N+        ++ +N+FM+  +    F N N L  +++  LLT  V+ +
Sbjct: 877  NNVMLLIATNLKEYNKFMSIFLKRKDFTNKN-LIQLISLKLLTFEVTQN 924

>COX2_TRIRU (Q01556) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide II)
          Length = 237

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 390 VTEKTENYYFYISTVCSLLKYITYTFIKLSKNSKS*IFHSYMEQIYEQNNPWIIVP 223
           + E   N  FY++ +   + ++  T IK   N+KS I H YM         W I P
Sbjct: 24  IEELHNNIMFYLTIILFSVTWMMITIIKSFVNTKSPISHKYMNHGTLIELIWTITP 79

>EX5B_BUCAP (Q8K9A9) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1179

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 315 FIKLSKNSKS*IFHSYMEQIYEQNNPW 235
           F K+ +NSK+ I H  ++++YE N+ W
Sbjct: 635 FQKIKENSKTKISHFLIQKLYEYNDKW 661

>SRB11_CAEEL (P46506) Serpentine receptor class beta-11 (Protein srb-11)|
          Length = 346

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 381 KTENYYFYISTVCSLLKYITYTFIKLSKNSKS*IFHSYMEQIY 253
           +  NYY  I + CS+   I +   KLSK+S    FH  ++ I+
Sbjct: 21  QASNYYQMIISFCSVFPLIYFLLFKLSKSS----FHGNLKTIF 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,395,054
Number of Sequences: 219361
Number of extensions: 1763960
Number of successful extensions: 3846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3845
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)