ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags34b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ICAM2_HUMAN (P13598) Intercellular adhesion molecule 2 precursor... 29 4.4
2FTHS_ENTFA (Q834D6) Formate--tetrahydrofolate ligase (EC 6.3.4.3... 28 7.6
3SPE2C_STRPU (P04111) SPEC 2C protein 28 9.9
4MUC_CANFA (P01874) Ig mu chain C region 28 9.9

>ICAM2_HUMAN (P13598) Intercellular adhesion molecule 2 precursor (ICAM-2)|
           (CD102 antigen)
          Length = 275

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +1

Query: 175 STTCLTGS-GKRSEFLSVLLVSQEAAWKRYCP---SYDAIFVCK*YCQRKTEFISSSL 336
           STTC     G     L+ +L+ ++A WK Y     S+D +  C   C  K E ++S++
Sbjct: 49  STTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNV 106



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>FTHS_ENTFA (Q834D6) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 556

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 36  EKLVQKQQYFQNLSKHIHLKGRYDAVISVAI 128
           E L   Q+ F NL KHI    RYD  + VAI
Sbjct: 348 ENLPALQKGFANLEKHIQNMQRYDVPVVVAI 378



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>SPE2C_STRPU (P04111) SPEC 2C protein|
          Length = 151

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -1

Query: 236 DTSKTDRNSLLFPDPVRHVV----DPTTNHEQAGASKRKGNGNGDDRIVTAFKVDML 78
           D   TD++  L P+ +R  +    DP    E+  A  +K +GN D  I  A  V M+
Sbjct: 91  DALDTDKSGSLSPEELRTALSACTDPPMTKEEIDAIIKKADGNNDGEIRRAEFVRMI 147



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>MUC_CANFA (P01874) Ig mu chain C region|
          Length = 450

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 316 QSFSDNIICKRRWHHSLGSIASMPLPEILAKPTEIHSFFP 197
           Q   ++I+CK R H        +PLP +L  P E+  F P
Sbjct: 79  QGTDEHIVCKVR-HSBGBKQKBVPLPVMLTLPPEVSGFIP 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,480,876
Number of Sequences: 219361
Number of extensions: 1239689
Number of successful extensions: 2937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2937
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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