ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags34b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRY1_ARATH (Q43125) Cryptochrome-1 (Blue light photoreceptor) 75 6e-14
2CRY2_ARATH (Q96524) Cryptochrome-2 (Blue light photoreceptor) 63 2e-10
3PHR1_SINAL (P40115) Deoxyribodipyrimidine photo-lyase (EC 4.1.99... 58 6e-09

>CRY1_ARATH (Q43125) Cryptochrome-1 (Blue light photoreceptor)|
          Length = 681

 Score = 74.7 bits (182), Expect = 6e-14
 Identities = 32/44 (72%), Positives = 38/44 (86%)
 Frame = +3

Query: 3   VFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNH 134
           VFHLVR+KQ+ W+NEGN A EES  LFL+S+GLREYSRY+ FNH
Sbjct: 264 VFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNH 307



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>CRY2_ARATH (Q96524) Cryptochrome-2 (Blue light photoreceptor)|
          Length = 612

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +3

Query: 3   VFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFN 131
           VF   RMKQ++W+ + N   EES  LFLR +GLREYSRY+CFN
Sbjct: 261 VFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFN 303



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>PHR1_SINAL (P40115) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 501

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = +3

Query: 3   VFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFN 131
           VF   RMKQ++W+ + N   EES  LFLR +GLR+YSR +CFN
Sbjct: 260 VFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDYSRIICFN 302


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,816,842
Number of Sequences: 219361
Number of extensions: 405147
Number of successful extensions: 1662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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