ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags34b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ201165.1| Hordeum vulgare subsp. vulgare cultivar CI6151 cr... 305 2e-80
2gb|DQ201154.1| Hordeum vulgare subsp. vulgare cultivar Kompolti ... 305 2e-80
3gb|DQ201153.1| Hordeum vulgare subsp. vulgare cultivar Morex cry... 305 2e-80
4gb|DQ201152.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo c... 305 2e-80
5ref|XM_472681.1| Oryza sativa (japonica cultivar-group), predic... 157 1e-35
6emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,... 157 1e-35
7dbj|AB098568.1| Oryza sativa (japonica cultivar-group) OsCRY2 mR... 157 1e-35
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 157 1e-35
9dbj|AK072182.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 1e-35
10dbj|AB073547.2| Oryza sativa (japonica cultivar-group) OsCRY1b m... 157 1e-35
11gb|AF545572.1| Sorghum bicolor cryptochrome 2 apoprotein (cry2) ... 117 1e-23
12gb|AY835380.1| Sorghum bicolor cryptochrome 2 gene, complete cds 109 3e-21
13emb|X99265.1|ZMBLPHRC1 Z.mays gene encoding blue-light photorece... 88 1e-14
14emb|X99262.1|ASBLPHREC A.sativa gene encoding blue-light photore... 52 5e-04
15emb|X99266.1|ZMBLPHRC2 Z.mays gene encoding blue-light photorece... 48 0.008
16ref|XM_845530.1| PREDICTED: Canis familiaris similar to interpho... 42 0.52
17gb|AC116310.2| Homo sapiens chromosome 5 clone RP11-203E6, compl... 42 0.52
18gb|AC093289.2| Homo sapiens chromosome 5 clone RP11-473L15, comp... 42 0.52
19ref|XM_421831.1| PREDICTED: Gallus gallus similar to Inpp5a prot... 40 2.1
20gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete seq... 38 8.2
21ref|XM_756918.1| Ustilago maydis 521 hypothetical protein (UM058... 38 8.2
22gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome... 38 8.2
23emb|CR647455.2|CNS0EYJP Tetraodon nigroviridis full-length cDNA 38 8.2
24emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 38 8.2
25emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete ... 38 8.2
26gb|AC113193.6| Homo sapiens chromosome 11, clone RP11-1026G19, c... 38 8.2
27emb|BX546493.8| Zebrafish DNA sequence from clone RP71-34B19, co... 38 8.2
28gb|AC023950.6| Homo sapiens chromosome 11, clone RP11-808N1, com... 38 8.2
29gb|AC087616.3| Homo sapiens chromosome 11, clone RP11-258C7, com... 38 8.2
30gb|AC149602.1| Mus musculus BAC clone RP24-116G21 from chromosom... 38 8.2 
>gb|DQ201165.1| Hordeum vulgare subsp. vulgare cultivar CI6151 cryptochrome 1b
           mRNA, partial cds
          Length = 1736

 Score =  305 bits (154), Expect = 2e-80
 Identities = 165/168 (98%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 114

                                                                       
Query: 61  ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 174

                                                           
Query: 121 tttgcttcaaccatncatgcagcncatgagaagcccctncttgcacac 168
           |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 175 tttgcttcaaccatccatgcagc-catgagaagcccctccttgcacac 221
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>gb|DQ201154.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai cryptochrome
            1b (Cry1b) gene, complete cds
          Length = 4753

 Score =  305 bits (154), Expect = 2e-80
 Identities = 165/168 (98%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 2056

                                                                        
Query: 61   ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 2116

                                                            
Query: 121  tttgcttcaaccatncatgcagcncatgagaagcccctncttgcacac 168
            |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 2117 tttgcttcaaccatccatgcagc-catgagaagcccctccttgcacac 2163
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>gb|DQ201153.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1b (Cry1b)
            gene, complete cds
          Length = 4753

 Score =  305 bits (154), Expect = 2e-80
 Identities = 165/168 (98%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 2056

                                                                        
Query: 61   ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 2116

                                                            
Query: 121  tttgcttcaaccatncatgcagcncatgagaagcccctncttgcacac 168
            |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 2117 tttgcttcaaccatccatgcagc-catgagaagcccctccttgcacac 2163
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>gb|DQ201152.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo cryptochrome 1b
            (Cry1b) gene, complete cds
          Length = 4753

 Score =  305 bits (154), Expect = 2e-80
 Identities = 165/168 (98%), Gaps = 1/168 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 2056

                                                                        
Query: 61   ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 2116

                                                            
Query: 121  tttgcttcaaccatncatgcagcncatgagaagcccctncttgcacac 168
            |||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct: 2117 tttgcttcaaccatccatgcagc-catgagaagcccctccttgcacac 2163
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>ref|XM_472681.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2082

 Score =  157 bits (79), Expect = 1e-35
 Identities = 139/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
           |||| |||||||||||||| |||||||| || |||||||||||||||||||| |  ||||
Sbjct: 791 aggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcag 850

                                                                       
Query: 61  ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
           |||| |||||||||||||||||||| || ||| | ||||||||||||||||| |||||||
Sbjct: 851 ctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatc 910

                                                 
Query: 121 tttgcttcaaccatncatgcagcncatgagaagcccct 158
           |  | ||||||||  |||||||| ||||||||||||||
Sbjct: 911 tgagtttcaaccacccatgcagc-catgagaagcccct 947
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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
              complete sequence
          Length = 175698

 Score =  157 bits (79), Expect = 1e-35
 Identities = 139/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                          
Query: 1      aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
              |||| |||||||||||||| |||||||| || |||||||||||||||||||| |  ||||
Sbjct: 130815 aggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcag 130874

                                                                          
Query: 61     ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
              |||| |||||||||||||||||||| || ||| | ||||||||||||||||| |||||||
Sbjct: 130875 ctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatc 130934

                                                    
Query: 121    tttgcttcaaccatncatgcagcncatgagaagcccct 158
              |  | ||||||||  |||||||| ||||||||||||||
Sbjct: 130935 tgagtttcaaccacccatgcagc-catgagaagcccct 130971
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>dbj|AB098568.1| Oryza sativa (japonica cultivar-group) OsCRY2 mRNA for
           cryptochrome, complete cds
          Length = 1707

 Score =  157 bits (79), Expect = 1e-35
 Identities = 139/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
           |||| |||||||||||||| |||||||| || |||||||||||||||||||| |  ||||
Sbjct: 416 aggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcag 475

                                                                       
Query: 61  ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
           |||| |||||||||||||||||||| || ||| | ||||||||||||||||| |||||||
Sbjct: 476 ctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatc 535

                                                 
Query: 121 tttgcttcaaccatncatgcagcncatgagaagcccct 158
           |  | ||||||||  |||||||| ||||||||||||||
Sbjct: 536 tgagtttcaaccacccatgcagc-catgagaagcccct 572
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  157 bits (79), Expect = 1e-35
 Identities = 139/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
                |||| |||||||||||||| |||||||| || |||||||||||||||||||| |  ||||
Sbjct: 22527060 aggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcag 22527119

                                                                            
Query: 61       ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
                |||| |||||||||||||||||||| || ||| | ||||||||||||||||| |||||||
Sbjct: 22527120 ctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatc 22527179

                                                      
Query: 121      tttgcttcaaccatncatgcagcncatgagaagcccct 158
                |  | ||||||||  |||||||| ||||||||||||||
Sbjct: 22527180 tgagtttcaaccacccatgcagc-catgagaagcccct 22527216
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>dbj|AK072182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D14, full
            insert sequence
          Length = 4629

 Score =  157 bits (79), Expect = 1e-35
 Identities = 139/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
            |||| |||||||||||||| |||||||| || |||||||||||||||||||| |  ||||
Sbjct: 2130 aggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcag 2189

                                                                        
Query: 61   ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
            |||| |||||||||||||||||||| || ||| | ||||||||||||||||| |||||||
Sbjct: 2190 ctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatc 2249

                                                  
Query: 121  tttgcttcaaccatncatgcagcncatgagaagcccct 158
            |  | ||||||||  |||||||| ||||||||||||||
Sbjct: 2250 tgagtttcaaccacccatgcagc-catgagaagcccct 2286
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>dbj|AB073547.2| Oryza sativa (japonica cultivar-group) OsCRY1b mRNA for cryptochrome
            1b, complete cds
          Length = 2904

 Score =  157 bits (79), Expect = 1e-35
 Identities = 139/158 (87%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
            |||| |||||||||||||| |||||||| || |||||||||||||||||||| |  ||||
Sbjct: 1213 aggtcttccaccttgttcggatgaagcagcttgtgtggagcaatgagggcaatcgtgcag 1272

                                                                        
Query: 61   ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
            |||| |||||||||||||||||||| || ||| | ||||||||||||||||| |||||||
Sbjct: 1273 ctgaagagagctgcaccctgttccttcggtccattggtctccgggagtactcacggtatc 1332

                                                  
Query: 121  tttgcttcaaccatncatgcagcncatgagaagcccct 158
            |  | ||||||||  |||||||| ||||||||||||||
Sbjct: 1333 tgagtttcaaccacccatgcagc-catgagaagcccct 1369
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>gb|AF545572.1| Sorghum bicolor cryptochrome 2 apoprotein (cry2) mRNA, complete cds
          Length = 2206

 Score =  117 bits (59), Expect = 1e-23
 Identities = 134/158 (84%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
            ||||||||||||| ||||| |||||||| || |||||||| || |||||||||||||| |
Sbjct: 844  aggttttccacctagttcgtatgaagcagcttgtgtggagtaacgagggcaaccacgctg 903

                                                                        
Query: 61   ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
            ||||||||||||||||| |||| ||||| ||| | || || ||||||||||| ||||| |
Sbjct: 904  ctgaggagagctgcaccttgtttctccgttccattggcctgcgggagtactctcggtacc 963

                                                  
Query: 121  tttgcttcaaccatncatgcagcncatgagaagcccct 158
            |  ||||||| ||  || ||||| ||||||| ||||||
Sbjct: 964  tgagcttcaatcacccaagcagc-catgagaggcccct 1000
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>gb|AY835380.1| Sorghum bicolor cryptochrome 2 gene, complete cds
          Length = 3417

 Score =  109 bits (55), Expect = 3e-21
 Identities = 133/158 (84%), Gaps = 1/158 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    aggttttccaccttgttcgaatgaagcaactcgtgtggagcaatgagggcaaccacgcag 60
            ||||||||||||| ||||| |||||||| || |||||||| || |||||||| ||||| |
Sbjct: 1724 aggttttccacctagttcgtatgaagcagcttgtgtggagtaacgagggcaatcacgctg 1783

                                                                        
Query: 61   ctgaggagagctgcaccctgttcctccgatccgtcggtctccgggagtactcccggtatc 120
            ||||||||||||||||| |||| ||||| ||| | || || ||||||||||| ||||| |
Sbjct: 1784 ctgaggagagctgcaccttgtttctccgttccattggcctgcgggagtactctcggtacc 1843

                                                  
Query: 121  tttgcttcaaccatncatgcagcncatgagaagcccct 158
            |  ||||||| ||  || ||||| ||||||| ||||||
Sbjct: 1844 tgagcttcaatcacccaagcagc-catgagaggcccct 1880
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>emb|X99265.1|ZMBLPHRC1 Z.mays gene encoding blue-light photoreceptor, intron, 666bp
          Length = 666

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                       
Query: 21  atgaagcaactcgtgtggagcaatgagggcaaccacgcagctgaggagagctgcaccctg 80
           |||||||| ||| ||||||||||||| ||||||||||| |  ||||||||||||||||||
Sbjct: 484 atgaagcagctcatgtggagcaatgacggcaaccacgccggcgaggagagctgcaccctg 543

                   
Query: 81  ttcctccg 88
           ||||||||
Sbjct: 544 ttcctccg 551
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>emb|X99262.1|ASBLPHREC A.sativa gene encoding blue-light photoreceptor, intron
          Length = 646

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 101/125 (80%), Gaps = 1/125 (0%)
 Strand = Plus / Plus

                                                                       
Query: 34  tgtggagcaatgagggcaaccacgcagctgaggagagctgcaccctgttcctccgatccg 93
           |||||||||||||| ||||||| |  |  |||||| |||||| ||| || ||||| ||| 
Sbjct: 477 tgtggagcaatgagagcaaccatgacggggaggagggctgcagcctttttctccggtcca 536

                                                                       
Query: 94  tcggtctccgggagtactcccggtatctttgcttcaaccatncatgcagcncatgagaag 153
           | || || || ||||||||| |||| ||   |||||||||| |||||||| || ||||||
Sbjct: 537 ttggcctgcgagagtactccaggtacctcgccttcaaccatccatgcagc-cacgagaag 595

                
Query: 154 cccct 158
           |||||
Sbjct: 596 cccct 600
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>emb|X99266.1|ZMBLPHRC2 Z.mays gene encoding blue-light photoreceptor, intron, 625bp
          Length = 625

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 75/92 (81%)
 Strand = Plus / Plus

                                                                       
Query: 21  atgaagcaactcgtgtggagcaatgagggcaaccacgcagctgaggagagctgcaccctg 80
           |||||||| ||  |||||||||| || ||| ||| ||| |  |||||||||||||| || 
Sbjct: 443 atgaagcagctgatgtggagcaacgacggcgaccgcgccggcgaggagagctgcacgcta 502

                                           
Query: 81  ttcctccgatccgtcggtctccgggagtactc 112
           ||||||||  || |||| || |||||||||||
Sbjct: 503 ttcctccgcgccatcgggctgcgggagtactc 534
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>ref|XM_845530.1| PREDICTED: Canis familiaris similar to interphotoreceptor matrix
            proteoglycan 2 (LOC608491), mRNA
          Length = 4008

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 2    ggttttccaccttgttcgaatgaag 26
            |||||||||||||||| ||||||||
Sbjct: 1009 ggttttccaccttgttggaatgaag 985
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>gb|AC116310.2| Homo sapiens chromosome 5 clone RP11-203E6, complete sequence
          Length = 149704

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    gcagctgaggagagctgcacc 77
             |||||||||||||||||||||
Sbjct: 87706 gcagctgaggagagctgcacc 87726
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>gb|AC093289.2| Homo sapiens chromosome 5 clone RP11-473L15, complete sequence
          Length = 159956

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     gcagctgaggagagctgcacc 77
              |||||||||||||||||||||
Sbjct: 147454 gcagctgaggagagctgcacc 147434
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>ref|XM_421831.1| PREDICTED: Gallus gallus similar to Inpp5a protein (LOC423973), mRNA
          Length = 3852

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    ccaccttgttcgaatgaagc 27
            ||||||||||||||||||||
Sbjct: 3126 ccaccttgttcgaatgaagc 3107
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>gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete sequence
          Length = 222162

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     aggttttccaccttgttcg 19
             |||||||||||||||||||
Sbjct: 30811 aggttttccaccttgttcg 30793
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>ref|XM_756918.1| Ustilago maydis 521 hypothetical protein (UM05864.1) partial mRNA
          Length = 2121

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 66   gagagctgcaccctgttcc 84
            |||||||||||||||||||
Sbjct: 2097 gagagctgcaccctgttcc 2079
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>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete
            sequence
          Length = 176667

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   gcagctgaggagagctgca 75
            |||||||||||||||||||
Sbjct: 1107 gcagctgaggagagctgca 1125
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>emb|CR647455.2|CNS0EYJP Tetraodon nigroviridis full-length cDNA
          Length = 1736

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 70 gctgcaccctgttcctccg 88
          |||||||||||||||||||
Sbjct: 43 gctgcaccctgttcctccg 61
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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 102    cgggagtactcccggtatc 120
              |||||||||||||||||||
Sbjct: 128731 cgggagtactcccggtatc 128713
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>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29
          Length = 299050

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 93     gtcggtctccgggagtact 111
              |||||||||||||||||||
Sbjct: 186716 gtcggtctccgggagtact 186698
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>gb|AC113193.6| Homo sapiens chromosome 11, clone RP11-1026G19, complete sequence
          Length = 182208

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 56     cgcagctgaggagagctgc 74
              |||||||||||||||||||
Sbjct: 157924 cgcagctgaggagagctgc 157942
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>emb|BX546493.8| Zebrafish DNA sequence from clone RP71-34B19, complete sequence
          Length = 173065

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     aactcgtgtggagcaatga 46
              |||||||||||||||||||
Sbjct: 102254 aactcgtgtggagcaatga 102236
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>gb|AC023950.6| Homo sapiens chromosome 11, clone RP11-808N1, complete sequence
          Length = 211464

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 56  cgcagctgaggagagctgc 74
           |||||||||||||||||||
Sbjct: 122 cgcagctgaggagagctgc 140
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>gb|AC087616.3| Homo sapiens chromosome 11, clone RP11-258C7, complete sequence
          Length = 177939

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    cgcagctgaggagagctgc 74
             |||||||||||||||||||
Sbjct: 81827 cgcagctgaggagagctgc 81809
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>gb|AC149602.1| Mus musculus BAC clone RP24-116G21 from chromosome 8, complete sequence
          Length = 158424

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    gcagctgaggagagctgca 75
             |||||||||||||||||||
Sbjct: 41601 gcagctgaggagagctgca 41583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 780,986
Number of Sequences: 3902068
Number of extensions: 780986
Number of successful extensions: 49931
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49864
Number of HSP's gapped (non-prelim): 58
length of query: 168
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 146
effective length of database: 17,147,199,772
effective search space: 2503491166712
effective search space used: 2503491166712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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