Clone Information

BLAST Search Result

Clone Name	bags33m02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK102519.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	333	4e-88
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	260	5e-66
3	dbj\|AP003298.3\| Oryza sativa (japonica cultivar-group) genomic D...	260	5e-66
4	dbj\|AP003277.2\| Oryza sativa (japonica cultivar-group) genomic D...	260	5e-66
5	ref\|NM_189478.1\| Oryza sativa (japonica cultivar-group), predic...	204	2e-49
6	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	70	9e-09
7	dbj\|AP005491.3\| Oryza sativa (japonica cultivar-group) genomic D...	70	9e-09
8	dbj\|AP004553.2\| Oryza sativa (japonica cultivar-group) genomic D...	70	9e-09
9	emb\|Z83850.1\|HS82J11 Human DNA sequence from clone RP1-82J11 on ...	46	0.13
10	gb\|AC129330.4\| Mus musculus BAC clone RP23-61B8 from chromosome ...	44	0.51
11	emb\|AL929101.4\| Human DNA sequence from clone RP11-22B10 on chro...	44	0.51
12	gb\|AC137126.13\| Mus musculus chromosome 15, clone RP24-250I9, co...	44	0.51
13	ref\|XM_857999.1\| PREDICTED: Canis familiaris similar to Ras-rela...	42	2.0
14	ref\|XM_857973.1\| PREDICTED: Canis familiaris similar to Ras-rela...	42	2.0
15	gb\|AC134858.6\| Mus musculus BAC clone RP23-361A18 from chromosom...	42	2.0
16	gb\|AC151481.4\| Medicago truncatula clone mth2-3m11, complete seq...	42	2.0
17	emb\|BX511151.8\| Zebrafish DNA sequence from clone DKEY-242C17 in...	42	2.0
18	gb\|AC156982.8\| Mus musculus chromosome 19, clone RP23-183N3, com...	42	2.0
19	gb\|AC160566.2\| Pan troglodytes BAC clone CH251-353L1 from chromo...	42	2.0
20	dbj\|AP004372.3\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	2.0
21	gb\|AC171734.1\| Lycopersicon esculentum chromosome 11 clone C11HB...	42	2.0
22	gb\|AE017347.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	7.9
23	gb\|AC150871.4\| Bos taurus BAC CH240-316E7 (Children's Hospital ...	40	7.9
24	ref\|XR_003317.1\| PREDICTED: Mus musculus hypothetical LOC620018 ...	40	7.9
25	ref\|XM_905312.2\| PREDICTED: Mus musculus similar to splicing coa...	40	7.9
26	emb\|CR954246.1\| Pseudoalteromonas haloplanktis str. TAC125 chrom...	40	7.9
27	emb\|CR628387.12\| Zebrafish DNA sequence from clone DKEY-59J17 in...	40	7.9
28	gb\|AC119996.7\| Mus musculus chromosome 19, clone RP24-120D1, com...	40	7.9
29	gb\|AC117629.16\| Mus musculus chromosome 19, clone RP23-179C21, c...	40	7.9
30	gb\|AC166654.1\| Mus musculus BAC clone RP23-426B21 from chromosom...	40	7.9
31	emb\|BX640588.5\| Zebrafish DNA sequence from clone DKEY-110L7 in ...	40	7.9
32	gb\|AC090881.9\| Mus Musculus Strain C57BL6/J chromosome 17 BAC, R...	40	7.9
33	gb\|AC067718.20\| Homo sapiens 3 BAC RP11-198M8 (Roswell Park Canc...	40	7.9
34	gb\|AC099660.5\| Homo sapiens 3 BAC RP11-3A3 (Roswell Park Cancer ...	40	7.9
35	ref\|XM_683810.1\| PREDICTED: Danio rerio similar to acetyl-CoA sy...	40	7.9
36	gb\|AC129176.6\| Mus musculus BAC clone RP23-124D10 from chromosom...	40	7.9
37	dbj\|AP003314.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
38	dbj\|AP002866.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.9
39	emb\|AL671992.5\| Mouse DNA sequence from clone RP23-338G1 on chro...	40	7.9
40	emb\|AL929023.3\| Zebrafish DNA sequence from clone DKEY-98G12 in ...	40	7.9
41	dbj\|AP006108.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	7.9

>dbj|AK102519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095N03, full
            insert sequence
          Length = 2914

 Score =  333 bits (168), Expect = 4e-88
 Identities = 330/384 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1    cacgcttgctagtatgtgtagacttgtttgtcgagaatgtcacaacagaacaattagcgg 60
            ||||||||||||| ||||||||||||||  | ||||||||  ||||| | ||| | || |
Sbjct: 2058 cacgcttgctagtgtgtgtagacttgttatttgagaatgtttcaacaaaccaactggcag 2117

                                                                        
Query: 61   atataaccattaaatctgaagaggcttctggtagcaaggctggcatggaccaaacaccag 120
            ||||||| |||||||| || ||||||||||||||  ||| |||| |||||||||||  | 
Sbjct: 2118 atataacaattaaatccgaggaggcttctggtagtgaggatggcttggaccaaacattac 2177

                                                                        
Query: 121  aaggatccgcaagcataccaactcttgttcctgttgaagagatacagtcactgcctcccg 180
            ||||||| |||||  | |||||| |||||| || | |||||||||| | | || ||||||
Sbjct: 2178 aaggatctgcaagtgttccaactattgttcttgataaagagatacaattattggctcccg 2237

                                                                        
Query: 181  aacagacagctaagatgcttcttcaggtccactttcatcaccatctcttgcccttgaagt 240
            |||| || |  |||||| |||||||||| ||||| ||||||||||| |||||| | ||||
Sbjct: 2238 aacaaacggaaaagatggttcttcaggttcacttccatcaccatctattgccccttaagt 2297

                                                                        
Query: 241  tgtctgtcctttgcaatgggaaaaggcatccagccaaactgcacccggacattgcttatt 300
            ||||||| || ||||||||||||||||||||||| ||||| || || |||||||||||||
Sbjct: 2298 tgtctgtgctctgcaatgggaaaaggcatccagcaaaacttcatcctgacattgcttatt 2357

                                                                        
Query: 301  ttgtacgaccactacccatggacctaaatgcttttctatgcaaggaaaaccagctgaggg 360
            |||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2358 ttgtgcggccactgcccatggacctaaatgcttttctatgcaaggaaaaccaactgaggg 2417

                                    
Query: 361  gaatgtttgagtacgctagaaggt 384
            ||||||||||||| ||||||||||
Sbjct: 2418 gaatgtttgagtatgctagaaggt 2441

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  260 bits (131), Expect = 5e-66
 Identities = 218/247 (88%)
 Strand = Plus / Plus

                                                                            
Query: 138      ccaactcttgttcctgttgaagagatacagtcactgcctcccgaacagacagctaagatg 197
                |||||| |||||| || | |||||||||| | | || |||||||||| || |  ||||||
Sbjct: 42968114 ccaactattgttcttgataaagagatacaattattggctcccgaacaaacggaaaagatg 42968173

                                                                            
Query: 198      cttcttcaggtccactttcatcaccatctcttgcccttgaagttgtctgtcctttgcaat 257
                 |||||||||| ||||| ||||||||||| |||||| | ||||||||||| || ||||||
Sbjct: 42968174 gttcttcaggttcacttccatcaccatctattgccccttaagttgtctgtgctctgcaat 42968233

                                                                            
Query: 258      gggaaaaggcatccagccaaactgcacccggacattgcttattttgtacgaccactaccc 317
                ||||||||||||||||| ||||| || || ||||||||||||||||| || ||||| |||
Sbjct: 42968234 gggaaaaggcatccagcaaaacttcatcctgacattgcttattttgtgcggccactgccc 42968293

                                                                            
Query: 318      atggacctaaatgcttttctatgcaaggaaaaccagctgaggggaatgtttgagtacgct 377
                ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 42968294 atggacctaaatgcttttctatgcaaggaaaaccaactgaggggaatgtttgagtatgct 42968353

                       
Query: 378      agaaggt 384
                |||||||
Sbjct: 42968354 agaaggt 42968360



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                            
Query: 1        cacgcttgctagtatgtgtagacttgtttgtcgagaatgtcacaacagaacaattagcgg 60
                ||||||||||||| ||||||||||||||  | ||||||||  ||||| | ||| | || |
Sbjct: 42967834 cacgcttgctagtgtgtgtagacttgttatttgagaatgtttcaacaaaccaactggcag 42967893

                                                                            
Query: 61       atataaccattaaatctgaagaggcttctggtagcaaggctggcatggaccaaacaccag 120
                ||||||| |||||||| || ||||||||||||||  ||| |||| |||||||||||  | 
Sbjct: 42967894 atataacaattaaatccgaggaggcttctggtagtgaggatggcttggaccaaacattac 42967953

                             
Query: 121      aaggatccgcaag 133
                ||||||| |||||
Sbjct: 42967954 aaggatctgcaag 42967966



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 538      ttcagtttgcacatttcatt 557
                ||||||||||||||||||||
Sbjct: 24271902 ttcagtttgcacatttcatt 24271921

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>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698H10
          Length = 153449

 Score =  260 bits (131), Expect = 5e-66
 Identities = 218/247 (88%)
 Strand = Plus / Plus

                                                                         
Query: 138   ccaactcttgttcctgttgaagagatacagtcactgcctcccgaacagacagctaagatg 197
             |||||| |||||| || | |||||||||| | | || |||||||||| || |  ||||||
Sbjct: 68993 ccaactattgttcttgataaagagatacaattattggctcccgaacaaacggaaaagatg 69052

                                                                         
Query: 198   cttcttcaggtccactttcatcaccatctcttgcccttgaagttgtctgtcctttgcaat 257
              |||||||||| ||||| ||||||||||| |||||| | ||||||||||| || ||||||
Sbjct: 69053 gttcttcaggttcacttccatcaccatctattgccccttaagttgtctgtgctctgcaat 69112

                                                                         
Query: 258   gggaaaaggcatccagccaaactgcacccggacattgcttattttgtacgaccactaccc 317
             ||||||||||||||||| ||||| || || ||||||||||||||||| || ||||| |||
Sbjct: 69113 gggaaaaggcatccagcaaaacttcatcctgacattgcttattttgtgcggccactgccc 69172

                                                                         
Query: 318   atggacctaaatgcttttctatgcaaggaaaaccagctgaggggaatgtttgagtacgct 377
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 69173 atggacctaaatgcttttctatgcaaggaaaaccaactgaggggaatgtttgagtatgct 69232

                    
Query: 378   agaaggt 384
             |||||||
Sbjct: 69233 agaaggt 69239



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                         
Query: 1     cacgcttgctagtatgtgtagacttgtttgtcgagaatgtcacaacagaacaattagcgg 60
             ||||||||||||| ||||||||||||||  | ||||||||  ||||| | ||| | || |
Sbjct: 68713 cacgcttgctagtgtgtgtagacttgttatttgagaatgtttcaacaaaccaactggcag 68772

                                                                         
Query: 61    atataaccattaaatctgaagaggcttctggtagcaaggctggcatggaccaaacaccag 120
             ||||||| |||||||| || ||||||||||||||  ||| |||| |||||||||||  | 
Sbjct: 68773 atataacaattaaatccgaggaggcttctggtagtgaggatggcttggaccaaacattac 68832

                          
Query: 121   aaggatccgcaag 133
             ||||||| |||||
Sbjct: 68833 aaggatctgcaag 68845

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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0518C01
          Length = 173555

 Score =  260 bits (131), Expect = 5e-66
 Identities = 218/247 (88%)
 Strand = Plus / Plus

                                                                          
Query: 138    ccaactcttgttcctgttgaagagatacagtcactgcctcccgaacagacagctaagatg 197
              |||||| |||||| || | |||||||||| | | || |||||||||| || |  ||||||
Sbjct: 161848 ccaactattgttcttgataaagagatacaattattggctcccgaacaaacggaaaagatg 161907

                                                                          
Query: 198    cttcttcaggtccactttcatcaccatctcttgcccttgaagttgtctgtcctttgcaat 257
               |||||||||| ||||| ||||||||||| |||||| | ||||||||||| || ||||||
Sbjct: 161908 gttcttcaggttcacttccatcaccatctattgccccttaagttgtctgtgctctgcaat 161967

                                                                          
Query: 258    gggaaaaggcatccagccaaactgcacccggacattgcttattttgtacgaccactaccc 317
              ||||||||||||||||| ||||| || || ||||||||||||||||| || ||||| |||
Sbjct: 161968 gggaaaaggcatccagcaaaacttcatcctgacattgcttattttgtgcggccactgccc 162027

                                                                          
Query: 318    atggacctaaatgcttttctatgcaaggaaaaccagctgaggggaatgtttgagtacgct 377
              ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 162028 atggacctaaatgcttttctatgcaaggaaaaccaactgaggggaatgtttgagtatgct 162087

                     
Query: 378    agaaggt 384
              |||||||
Sbjct: 162088 agaaggt 162094



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 111/133 (83%)
 Strand = Plus / Plus

                                                                          
Query: 1      cacgcttgctagtatgtgtagacttgtttgtcgagaatgtcacaacagaacaattagcgg 60
              ||||||||||||| ||||||||||||||  | ||||||||  ||||| | ||| | || |
Sbjct: 161568 cacgcttgctagtgtgtgtagacttgttatttgagaatgtttcaacaaaccaactggcag 161627

                                                                          
Query: 61     atataaccattaaatctgaagaggcttctggtagcaaggctggcatggaccaaacaccag 120
              ||||||| |||||||| || ||||||||||||||  ||| |||| |||||||||||  | 
Sbjct: 161628 atataacaattaaatccgaggaggcttctggtagtgaggatggcttggaccaaacattac 161687

                           
Query: 121    aaggatccgcaag 133
              ||||||| |||||
Sbjct: 161688 aaggatctgcaag 161700

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>ref|NM_189478.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3111

 Score =  204 bits (103), Expect = 2e-49
 Identities = 136/147 (92%)
 Strand = Plus / Plus

                                                                        
Query: 238  agttgtctgtcctttgcaatgggaaaaggcatccagccaaactgcacccggacattgctt 297
            |||||||||| || ||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct: 2621 agttgtctgtgctctgcaatgggaaaaggcatccagcaaaacttcatcctgacattgctt 2680

                                                                        
Query: 298  attttgtacgaccactacccatggacctaaatgcttttctatgcaaggaaaaccagctga 357
            ||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2681 attttgtgcggccactgcccatggacctaaatgcttttctatgcaaggaaaaccaactga 2740

                                       
Query: 358  ggggaatgtttgagtacgctagaaggt 384
            |||||||||||||||| ||||||||||
Sbjct: 2741 ggggaatgtttgagtatgctagaaggt 2767



 Score =  107 bits (54), Expect = 4e-20
 Identities = 168/206 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1    cacgcttgctagtatgtgtagacttgtttgtcgagaatgtcacaacagaacaattagcgg 60
            ||||||||||||| ||||||||||||||  | ||||||||  ||||| | ||| | || |
Sbjct: 2417 cacgcttgctagtgtgtgtagacttgttatttgagaatgtttcaacaaaccaactggcag 2476

                                                                        
Query: 61   atataaccattaaatctgaagaggcttctggtagcaaggctggcatggaccaaacaccag 120
            ||||||| |||||||| || ||||||||||||||  ||| |||| |||||||||||  | 
Sbjct: 2477 atataacaattaaatccgaggaggcttctggtagtgaggatggcttggaccaaacattac 2536

                                                                        
Query: 121  aaggatccgcaagcataccaactcttgttcctgttgaagagatacagtcactgcctcccg 180
            ||||||| |||||  | |||||| |||||| || | |||||||||| | | || ||||||
Sbjct: 2537 aaggatctgcaagtgttccaactattgttcttgataaagagatacaattattggctcccg 2596

                                      
Query: 181  aacagacagctaagatgcttcttcag 206
            |||| || |  |||||| ||||||||
Sbjct: 2597 aacaaacggaaaagatggttcttcag 2622

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                            
Query: 296      ttattttgtacgaccactacccatggacctaaatgcttttctatgcaaggaaaaccagct 355
                |||||||||  ||||||| ||||||| ||||||||  ||||||| ||||| ||||||| |
Sbjct: 15350205 ttattttgtgtgaccactgcccatgggcctaaatgtatttctattcaagggaaaccagtt 15350264

                               
Query: 356      gaggggaatgtttga 370
                ||| |||||||||||
Sbjct: 15350265 gagaggaatgtttga 15350279



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 194      gatgcttcttcaggtccactttcatca 220
                |||| ||||||||||||||||||||||
Sbjct: 15350108 gatggttcttcaggtccactttcatca 15350134

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>dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0062G05
          Length = 152802

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                          
Query: 296    ttattttgtacgaccactacccatggacctaaatgcttttctatgcaaggaaaaccagct 355
              |||||||||  ||||||| ||||||| ||||||||  ||||||| ||||| ||||||| |
Sbjct: 135836 ttattttgtgtgaccactgcccatgggcctaaatgtatttctattcaagggaaaccagtt 135895

                             
Query: 356    gaggggaatgtttga 370
              ||| |||||||||||
Sbjct: 135896 gagaggaatgtttga 135910



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 194    gatgcttcttcaggtccactttcatca 220
              |||| ||||||||||||||||||||||
Sbjct: 135739 gatggttcttcaggtccactttcatca 135765

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>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1790_D02
          Length = 162928

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                         
Query: 296   ttattttgtacgaccactacccatggacctaaatgcttttctatgcaaggaaaaccagct 355
             |||||||||  ||||||| ||||||| ||||||||  ||||||| ||||| ||||||| |
Sbjct: 35781 ttattttgtgtgaccactgcccatgggcctaaatgtatttctattcaagggaaaccagtt 35840

                            
Query: 356   gaggggaatgtttga 370
             ||| |||||||||||
Sbjct: 35841 gagaggaatgtttga 35855



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 194   gatgcttcttcaggtccactttcatca 220
             |||| ||||||||||||||||||||||
Sbjct: 35684 gatggttcttcaggtccactttcatca 35710

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>emb|Z83850.1|HS82J11 Human DNA sequence from clone RP1-82J11 on chromosome Xq22, complete
             sequence
          Length = 132981

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 550   atttcattaactatagaagaatg 572
             |||||||||||||||||||||||
Sbjct: 34670 atttcattaactatagaagaatg 34648

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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 74    atctgaagaggcttctggtagcaagg 99
             |||||||||||||||||||| |||||
Sbjct: 99369 atctgaagaggcttctggtaacaagg 99394

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>emb|AL929101.4| Human DNA sequence from clone RP11-22B10 on chromosome X Contains the
             GSPT2 gene for G1 to S phase transition 2, a pseudogene
             similar to part of p30 (nuclear protein p30), a zinc
             finger protein pseudogene, the 5' end of a variant of the
             MAGED1 gene for melanoma antigen, family D, 1 and two CpG
             islands, complete sequence
          Length = 157110

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 240   ttgtctgtcctttgcaatggga 261
             ||||||||||||||||||||||
Sbjct: 32271 ttgtctgtcctttgcaatggga 32292

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>gb|AC137126.13| Mus musculus chromosome 15, clone RP24-250I9, complete sequence
          Length = 193459

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 538   ttcagtttgcacatttcattaa 559
             ||||||||||||||||||||||
Sbjct: 74700 ttcagtttgcacatttcattaa 74721

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>ref|XM_857999.1| PREDICTED: Canis familiaris similar to Ras-related protein Rap-1A
           (Ras-related protein Krev-1), transcript variant 3
           (LOC483225), mRNA
          Length = 2542

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 69  attaaatctgaagaggcttct 89
           |||||||||||||||||||||
Sbjct: 872 attaaatctgaagaggcttct 892

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>ref|XM_857973.1| PREDICTED: Canis familiaris similar to Ras-related protein Rap-1A
           (Ras-related protein Krev-1), transcript variant 2
           (LOC483225), mRNA
          Length = 2426

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 69  attaaatctgaagaggcttct 89
           |||||||||||||||||||||
Sbjct: 756 attaaatctgaagaggcttct 776

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>gb|AC134858.6| Mus musculus BAC clone RP23-361A18 from chromosome 7, complete sequence
          Length = 214282

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   tccactttcatcaccatctct 228
             |||||||||||||||||||||
Sbjct: 32337 tccactttcatcaccatctct 32317

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>gb|AC151481.4| Medicago truncatula clone mth2-3m11, complete sequence
          Length = 99012

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 64    taaccattaaatctgaagagg 84
             |||||||||||||||||||||
Sbjct: 81578 taaccattaaatctgaagagg 81558

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>emb|BX511151.8| Zebrafish DNA sequence from clone DKEY-242C17 in linkage group 16,
             complete sequence
          Length = 157538

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 152   tgttgaagagatacagtcactgcct 176
             |||||||||||| ||||||||||||
Sbjct: 24593 tgttgaagagatgcagtcactgcct 24569

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>gb|AC156982.8| Mus musculus chromosome 19, clone RP23-183N3, complete sequence
          Length = 216311

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 528    atgaaaaagcttcagtttgca 548
              |||||||||||||||||||||
Sbjct: 146316 atgaaaaagcttcagtttgca 146336

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>gb|AC160566.2| Pan troglodytes BAC clone CH251-353L1 from chromosome unknown, complete
             sequence
          Length = 188544

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   cagacagctaagatgcttctt 203
             |||||||||||||||||||||
Sbjct: 90996 cagacagctaagatgcttctt 90976

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>dbj|AP004372.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-651K21, complete
             sequence
          Length = 197360

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   cagacagctaagatgcttctt 203
             |||||||||||||||||||||
Sbjct: 98659 cagacagctaagatgcttctt 98639

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>gb|AC171734.1| Lycopersicon esculentum chromosome 11 clone C11HBa0064J13, complete
             sequence
          Length = 118649

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 198   cttcttcaggtccactttcatcaccatct 226
             |||| |||||| |||||||||||||||||
Sbjct: 90926 cttcatcaggttcactttcatcaccatct 90954

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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
              sequence
          Length = 1347793

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 405    ttactagttacttagtttcatgca 428
              ||||| ||||||||||||||||||
Sbjct: 565155 ttacttgttacttagtttcatgca 565178

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>gb|AC150871.4| Bos taurus  BAC CH240-316E7 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 167244

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 535    agcttcagtttgcacatttcatta 558
              ||||||||||||||||||| ||||
Sbjct: 142706 agcttcagtttgcacattttatta 142683

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>ref|XR_003317.1| PREDICTED: Mus musculus hypothetical LOC620018 (LOC620018), mRNA
          Length = 3065

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  ttgaagagatacagtcactg 173
            ||||||||||||||||||||
Sbjct: 2782 ttgaagagatacagtcactg 2801

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>ref|XM_905312.2| PREDICTED: Mus musculus similar to splicing coactivator subunit
            SRm300 (LOC631478), mRNA
          Length = 3063

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  ttgaagagatacagtcactg 173
            ||||||||||||||||||||
Sbjct: 2780 ttgaagagatacagtcactg 2799

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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 89      tggtagcaaggctggcatgg 108
               ||||||||||||||||||||
Sbjct: 2894237 tggtagcaaggctggcatgg 2894218

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>emb|CR628387.12| Zebrafish DNA sequence from clone DKEY-59J17 in linkage group 17,
             complete sequence
          Length = 220664

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    aaggctggcatggaccaaac 115
             ||||||||||||||||||||
Sbjct: 80081 aaggctggcatggaccaaac 80062

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>gb|AC119996.7| Mus musculus chromosome 19, clone RP24-120D1, complete sequence
          Length = 172160

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 214    ttcatcaccatctcttgcccttga 237
              |||||||||||| |||||||||||
Sbjct: 128119 ttcatcaccatcccttgcccttga 128096

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>gb|AC117629.16| Mus musculus chromosome 19, clone RP23-179C21, complete sequence
          Length = 248718

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 214  ttcatcaccatctcttgcccttga 237
            |||||||||||| |||||||||||
Sbjct: 5516 ttcatcaccatcccttgcccttga 5493

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>gb|AC166654.1| Mus musculus BAC clone RP23-426B21 from chromosome 17, complete sequence
          Length = 185609

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     agaggcttctggtagcaagg 99
              ||||||||||||||||||||
Sbjct: 148427 agaggcttctggtagcaagg 148446

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>emb|BX640588.5| Zebrafish DNA sequence from clone DKEY-110L7 in linkage group 6,
             complete sequence
          Length = 117506

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   atgcaaggaaaaccagctga 357
             ||||||||||||||||||||
Sbjct: 98628 atgcaaggaaaaccagctga 98647

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>gb|AC090881.9| Mus Musculus Strain C57BL6/J chromosome 17 BAC, RP23-465G4, Complete
              Sequence, complete sequence
          Length = 167475

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     agaggcttctggtagcaagg 99
              ||||||||||||||||||||
Sbjct: 147636 agaggcttctggtagcaagg 147617

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>gb|AC067718.20| Homo sapiens 3 BAC RP11-198M8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97995

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 523   cactgatgaaaaagcttcagtttg 546
             |||||||||||||||| |||||||
Sbjct: 31978 cactgatgaaaaagctccagtttg 32001

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>gb|AC099660.5| Homo sapiens 3 BAC RP11-3A3 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 82144

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 523  cactgatgaaaaagcttcagtttg 546
            |||||||||||||||| |||||||
Sbjct: 9169 cactgatgaaaaagctccagtttg 9146

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>ref|XM_683810.1| PREDICTED: Danio rerio similar to acetyl-CoA synthetase 2
           (LOC560409), mRNA
          Length = 1658

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  aaggctggcatggaccaaac 115
           ||||||||||||||||||||
Sbjct: 323 aaggctggcatggaccaaac 342

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>gb|AC129176.6| Mus musculus BAC clone RP23-124D10 from chromosome unknown, complete
             sequence
          Length = 211031

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   ttgaagagatacagtcactg 173
             ||||||||||||||||||||
Sbjct: 92475 ttgaagagatacagtcactg 92494

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>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0046B10
          Length = 142596

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   ttcagtttgcacatttcatt 557
             ||||||||||||||||||||
Sbjct: 96466 ttcagtttgcacatttcatt 96485

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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0410E01
          Length = 166753

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   ttcagtttgcacatttcatt 557
             ||||||||||||||||||||
Sbjct: 17806 ttcagtttgcacatttcatt 17825

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>emb|AL671992.5| Mouse DNA sequence from clone RP23-338G1 on chromosome X, complete
              sequence
          Length = 213940

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    accagactctgtcctatctt 405
              ||||||||||||||||||||
Sbjct: 192745 accagactctgtcctatctt 192764

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>emb|AL929023.3| Zebrafish DNA sequence from clone DKEY-98G12 in linkage group 17,
             complete sequence
          Length = 198736

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    aaggctggcatggaccaaac 115
             ||||||||||||||||||||
Sbjct: 13347 aaggctggcatggaccaaac 13328

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>dbj|AP006108.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT11O06, TM0194,
             complete sequence
          Length = 108277

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   cttcagtttgcacatttcat 556
             ||||||||||||||||||||
Sbjct: 81163 cttcagtttgcacatttcat 81144


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,184,468
Number of Sequences: 3902068
Number of extensions: 5184468
Number of successful extensions: 92288
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92120
Number of HSP's gapped (non-prelim): 168
length of query: 583
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 560
effective length of database: 17,143,297,704
effective search space: 9600246714240
effective search space used: 9600246714240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result