| Clone Name | bags34a23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 2e-40 Identities = 121/132 (91%) Strand = Plus / Minus Query: 121 aatttgatagagcgctgtctgcagctgtacatgaccaaaggagaggttgttaggacactt 180 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||| Sbjct: 6574420 aatttgatagagcgctgtctacagctatacatgaacaaaggagaggttgttaggacgctt 6574361 Query: 181 tctactcgtgcgagaatagaacctggctttacaactttaggtaatgttgcaaattcagtt 240 ||||||||||| |||||||||||||| || || ||||||||| |||||||||| |||||| Sbjct: 6574360 tctactcgtgcaagaatagaacctggtttcactactttaggtgatgttgcaaaatcagtt 6574301 Query: 241 gctgatgatatt 252 | |||||||||| Sbjct: 6574300 gatgatgatatt 6574289 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 1 gtgcaaagtaaccaaccaaacacaatgggcagtgatgctcctgcaggagattctggttct 60 |||||||||||||| || || |||||| || ||||| ||||| |||||| |||||||| Sbjct: 6574650 gtgcaaagtaaccagccgaatccaatggccactgatggtcctggaggagactctggttca 6574591 Query: 61 ttggtagtcgctaacagtgataacagaaaagtctcccgcgaagacattgaacttgt 116 ||| |||||| | |||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 6574590 ttgtctatcgctagtaatgataatagaaaggtctcccgtgaagatattgaacttgt 6574535
>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489G09 Length = 148707 Score = 174 bits (88), Expect = 2e-40 Identities = 121/132 (91%) Strand = Plus / Minus Query: 121 aatttgatagagcgctgtctgcagctgtacatgaccaaaggagaggttgttaggacactt 180 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||| Sbjct: 141900 aatttgatagagcgctgtctacagctatacatgaacaaaggagaggttgttaggacgctt 141841 Query: 181 tctactcgtgcgagaatagaacctggctttacaactttaggtaatgttgcaaattcagtt 240 ||||||||||| |||||||||||||| || || ||||||||| |||||||||| |||||| Sbjct: 141840 tctactcgtgcaagaatagaacctggtttcactactttaggtgatgttgcaaaatcagtt 141781 Query: 241 gctgatgatatt 252 | |||||||||| Sbjct: 141780 gatgatgatatt 141769 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 1 gtgcaaagtaaccaaccaaacacaatgggcagtgatgctcctgcaggagattctggttct 60 |||||||||||||| || || |||||| || ||||| ||||| |||||| |||||||| Sbjct: 142130 gtgcaaagtaaccagccgaatccaatggccactgatggtcctggaggagactctggttca 142071 Query: 61 ttggtagtcgctaacagtgataacagaaaagtctcccgcgaagacattgaacttgt 116 ||| |||||| | |||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 142070 ttgtctatcgctagtaatgataatagaaaggtctcccgtgaagatattgaacttgt 142015
>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483F08 Length = 148985 Score = 174 bits (88), Expect = 2e-40 Identities = 121/132 (91%) Strand = Plus / Minus Query: 121 aatttgatagagcgctgtctgcagctgtacatgaccaaaggagaggttgttaggacactt 180 |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||| Sbjct: 54591 aatttgatagagcgctgtctacagctatacatgaacaaaggagaggttgttaggacgctt 54532 Query: 181 tctactcgtgcgagaatagaacctggctttacaactttaggtaatgttgcaaattcagtt 240 ||||||||||| |||||||||||||| || || ||||||||| |||||||||| |||||| Sbjct: 54531 tctactcgtgcaagaatagaacctggtttcactactttaggtgatgttgcaaaatcagtt 54472 Query: 241 gctgatgatatt 252 | |||||||||| Sbjct: 54471 gatgatgatatt 54460 Score = 63.9 bits (32), Expect = 5e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 1 gtgcaaagtaaccaaccaaacacaatgggcagtgatgctcctgcaggagattctggttct 60 |||||||||||||| || || |||||| || ||||| ||||| |||||| |||||||| Sbjct: 54821 gtgcaaagtaaccagccgaatccaatggccactgatggtcctggaggagactctggttca 54762 Query: 61 ttggtagtcgctaacagtgataacagaaaagtctcccgcgaagacattgaacttgt 116 ||| |||||| | |||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 54761 ttgtctatcgctagtaatgataatagaaaggtctcccgtgaagatattgaacttgt 54706
>dbj|AK072108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118G21, full insert sequence Length = 2418 Score = 105 bits (53), Expect = 1e-19 Identities = 104/121 (85%) Strand = Plus / Plus Query: 100 gaagacattgaacttgtccaaaatttgatagagcgctgtctgcagctgtacatgaccaaa 159 ||||| |||||||||||||| ||||| ||||| |||||||| ||||| || |||| | | Sbjct: 1303 gaagatattgaacttgtccagaatttaatagaacgctgtctacagctatatatgaataga 1362 Query: 160 ggagaggttgttaggacactttctactcgtgcgagaatagaacctggctttacaacttta 219 ||||| ||||||||||| |||||||||||||| ||||| |||||||| || || |||||| Sbjct: 1363 ggagaagttgttaggactctttctactcgtgcaagaattgaacctggtttcactacttta 1422 Query: 220 g 220 | Sbjct: 1423 g 1423
>ref|NM_188492.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 91.7 bits (46), Expect = 2e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 151 atgaccaaaggagaggttgttaggacactttctactcgtgcgagaatagaacctggcttt 210 |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| || Sbjct: 1 atgaacaaaggagaggttgttaggacgctttctactcgtgcaagaatagaacctggtttc 60 Query: 211 acaactttag 220 || ||||||| Sbjct: 61 actactttag 70
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15, complete sequence Length = 184316 Score = 91.7 bits (46), Expect = 2e-15 Identities = 94/110 (85%) Strand = Plus / Minus Query: 115 gtccaaaatttgatagagcgctgtctgcagctgtacatgaccaaaggagaggttgttagg 174 ||||| ||||| ||||| |||||||| ||||| || |||| | |||||| ||||||||| Sbjct: 2428 gtccagaatttaatagaacgctgtctacagctatatatgaatagaggagaagttgttagg 2369 Query: 175 acactttctactcgtgcgagaatagaacctggctttacaactttaggtaa 224 || |||||||||||||| ||||| |||||||| || || ||||||||||| Sbjct: 2368 actctttctactcgtgcaagaattgaacctggtttcactactttaggtaa 2319
>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0074P11, complete sequence Length = 148753 Score = 91.7 bits (46), Expect = 2e-15 Identities = 94/110 (85%) Strand = Plus / Minus Query: 115 gtccaaaatttgatagagcgctgtctgcagctgtacatgaccaaaggagaggttgttagg 174 ||||| ||||| ||||| |||||||| ||||| || |||| | |||||| ||||||||| Sbjct: 108459 gtccagaatttaatagaacgctgtctacagctatatatgaatagaggagaagttgttagg 108400 Query: 175 acactttctactcgtgcgagaatagaacctggctttacaactttaggtaa 224 || |||||||||||||| ||||| |||||||| || || ||||||||||| Sbjct: 108399 actctttctactcgtgcaagaattgaacctggtttcactactttaggtaa 108350
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 91.7 bits (46), Expect = 2e-15 Identities = 94/110 (85%) Strand = Plus / Minus Query: 115 gtccaaaatttgatagagcgctgtctgcagctgtacatgaccaaaggagaggttgttagg 174 ||||| ||||| ||||| |||||||| ||||| || |||| | |||||| ||||||||| Sbjct: 6877505 gtccagaatttaatagaacgctgtctacagctatatatgaatagaggagaagttgttagg 6877446 Query: 175 acactttctactcgtgcgagaatagaacctggctttacaactttaggtaa 224 || |||||||||||||| ||||| |||||||| || || ||||||||||| Sbjct: 6877445 actctttctactcgtgcaagaattgaacctggtttcactactttaggtaa 6877396 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tcttgtttggagttcttttt 271 |||||||||||||||||||| Sbjct: 24989680 tcttgtttggagttcttttt 24989699
>ref|XM_476152.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 843 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 159 aggagaggttgttaggacactttctactcgtgcgagaatagaacctggctttacaacttt 218 |||||| ||||||||||| |||||||||||||| ||||| |||||||| || || ||||| Sbjct: 9 aggagaagttgttaggactctttctactcgtgcaagaattgaacctggtttcactacttt 68 Query: 219 ag 220 || Sbjct: 69 ag 70
>ref|NM_130206.1| Arabidopsis thaliana unknown protein AT2G46420 mRNA, complete cds Length = 1862 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 101 aagacattgaacttgtccaaaatttgatagagcgctgtctgcagctgtacatga 154 |||| |||||||||||||||||||||||||| | ||||| ||| ||||||||| Sbjct: 659 aagatattgaacttgtccaaaatttgatagaaagatgtctccagttgtacatga 712
>gb|AY052357.1| Arabidopsis thaliana At2g46420/F11C10.11 mRNA, complete cds Length = 1862 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 101 aagacattgaacttgtccaaaatttgatagagcgctgtctgcagctgtacatga 154 |||| |||||||||||||||||||||||||| | ||||| ||| ||||||||| Sbjct: 659 aagatattgaacttgtccaaaatttgatagaaagatgtctccagttgtacatga 712
>emb|BX819286.1|CNS0A8S7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB64ZC04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1826 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 101 aagacattgaacttgtccaaaatttgatagagcgctgtctgcagctgtacatga 154 |||| |||||||||||||||||||||||||| | ||||| ||| ||||||||| Sbjct: 648 aagatattgaacttgtccaaaatttgatagaaagatgtctccagttgtacatga 701
>gb|BT002631.1| Arabidopsis thaliana At2g46420/F11C10.11 gene, complete cds Length = 1092 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 101 aagacattgaacttgtccaaaatttgatagagcgctgtctgcagctgtacatga 154 |||| |||||||||||||||||||||||||| | ||||| ||| ||||||||| Sbjct: 149 aagatattgaacttgtccaaaatttgatagaaagatgtctccagttgtacatga 202
>ref|NM_116035.1| Arabidopsis thaliana unknown protein AT3G61700 mRNA, complete cds Length = 597 Score = 54.0 bits (27), Expect = 5e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 101 aagacattgaacttgtccaaaatttgatagagcgctgtctgcagctgtacatgaccaaag 160 |||| ||||||||||| |||||||||||||| | ||||| ||| ||||||||| || || Sbjct: 143 aagatattgaacttgttcaaaatttgatagaaagatgtcttcagttgtacatgaacagag 202 Query: 161 gagaggttgttaggacactttctactcgtgcgagaatagaacctggctttacaac 215 ||||| || | ||| || | |||||||| || ||||| ||||| |||||||| Sbjct: 203 atgaggtcgtgaagactctcttgactcgtgcaaggatagaccctggatttacaac 257
>dbj|AK221540.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL07-72-O03 Length = 1868 Score = 54.0 bits (27), Expect = 5e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 101 aagacattgaacttgtccaaaatttgatagagcgctgtctgcagctgtacatgaccaaag 160 |||| ||||||||||| |||||||||||||| | ||||| ||| ||||||||| || || Sbjct: 649 aagatattgaacttgttcaaaatttgatagaaagatgtcttcagttgtacatgaacagag 708 Query: 161 gagaggttgttaggacactttctactcgtgcgagaatagaacctggctttacaac 215 ||||| || | ||| || | |||||||| || ||||| ||||| |||||||| Sbjct: 709 atgaggtcgtgaagactctcttgactcgtgcaaggatagaccctggatttacaac 763
>gb|AC151815.1| Solanum demissum chromosome 5 clone PGEC472P22 map MAP_LOC, complete sequence Length = 136150 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 78 tgataacagaaaagtctcccgcgaagacattgaacttgt 116 ||||||||||||||| || || ||||| ||||||||||| Sbjct: 109768 tgataacagaaaagtttcacgtgaagatattgaacttgt 109730
>ref|XM_759195.1| Theileria parva strain Muguga chromosome 4 hypothetical protein (TP04_0652) partial mRNA Length = 2202 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 257 tttggagttcttttttctacat 278 |||||||||||||||||||||| Sbjct: 1394 tttggagttcttttttctacat 1373
>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82 Length = 195165 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tattcttgtttggagttcttt 269 ||||||||||||||||||||| Sbjct: 118831 tattcttgtttggagttcttt 118851
>emb|AL079347.1|ATF11I11 Arabidopsis thaliana DNA chromosome 4, BAC clone F11I11 (ESSA project) Length = 103150 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tattcttgtttggagttcttt 269 ||||||||||||||||||||| Sbjct: 89372 tattcttgtttggagttcttt 89392
>emb|AL022023.1|ATM4E13 Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project) Length = 80346 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 tattcttgtttggagttcttt 269 ||||||||||||||||||||| Sbjct: 19864 tattcttgtttggagttcttt 19884
>gb|AC011493.5| Homo sapiens chromosome 19 clone CTB-28I9, complete sequence Length = 117549 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tgaacaaatttgctcaataaa 430 ||||||||||||||||||||| Sbjct: 108767 tgaacaaatttgctcaataaa 108747
>gb|AC073544.4| Homo sapiens chromosome 19 clone RP11-359H18, complete sequence Length = 177299 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tgaacaaatttgctcaataaa 430 ||||||||||||||||||||| Sbjct: 20791 tgaacaaatttgctcaataaa 20771
>gb|AC006526.8| Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete sequence Length = 95214 Score = 42.1 bits (21), Expect = 1.7 Identities = 87/109 (79%) Strand = Plus / Plus Query: 115 gtccaaaatttgatagagcgctgtctgcagctgtacatgaccaaaggagaggttgttagg 174 ||||||||||||||||| | ||||| ||| ||||||||| || || ||||| || | | Sbjct: 39074 gtccaaaatttgatagaaagatgtctccagttgtacatgagcagagatgaggtcgtaaag 39133 Query: 175 acactttctactcgtgcgagaatagaacctggctttacaactttaggta 223 ||||| | || ||||| || || || ||||| |||||||| ||||||| Sbjct: 39134 acactcttgacccgtgcaaggattgaccctggttttacaacattaggta 39182
>ref|NM_120036.1| Arabidopsis thaliana unknown protein AT4G38760 mRNA, complete cds Length = 1686 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 caaattcagttgctgatgat 249 |||||||||||||||||||| Sbjct: 523 caaattcagttgctgatgat 542
>ref|NM_105062.2| Arabidopsis thaliana ATP binding / nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor AT1G63880 mRNA, complete cds Length = 3369 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cgcgaagacattgaacttgt 116 |||||||||||||||||||| Sbjct: 131 cgcgaagacattgaacttgt 112
>ref|XM_515004.1| PREDICTED: Pan troglodytes similar to peptidylprolyl isomerase-like 2 isoform a; cyclophilin-like protein CyP-60; peptidylprolyl cis-trans isomerase; cyclophilin, 60kDa (LOC458678), mRNA Length = 2439 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 313 agacattgaacttgtccaaa 294
>gb|AC129022.5| Mus musculus BAC clone RP23-318P2 from chromosome 12, complete sequence Length = 206083 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gcaaagtaaccaaccaaaca 22 |||||||||||||||||||| Sbjct: 177268 gcaaagtaaccaaccaaaca 177249
>gb|AC104613.2| Drosophila melanogaster clone BACR06K07, complete sequence Length = 152934 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tagtttatttgcgtgttaac 300 |||||||||||||||||||| Sbjct: 136684 tagtttatttgcgtgttaac 136703
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 tcttgtttggagttcttttt 271 |||||||||||||||||||| Sbjct: 58533 tcttgtttggagttcttttt 58552
>gb|AC080144.11| Mus musculus chromosome 6, clone RP23-237K24, complete sequence Length = 184091 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ggagaggttgttaggacact 179 |||||||||||||||||||| Sbjct: 90763 ggagaggttgttaggacact 90782
>emb|CR812792.16| Zebrafish DNA sequence from clone DKEY-33J18 in linkage group 4, complete sequence Length = 123987 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 tgtttggagttcttttttctacat 278 |||||||| ||||||||||||||| Sbjct: 2942 tgtttggacttcttttttctacat 2919
>gb|AC131704.3| Mus musculus BAC clone RP24-149D9 from chromosome 12, complete sequence Length = 163959 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gcaaagtaaccaaccaaaca 22 |||||||||||||||||||| Sbjct: 162512 gcaaagtaaccaaccaaaca 162531
>gb|AC110538.6| Mus musculus chromosome 5, clone RP23-71L23, complete sequence Length = 205923 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tgatgaacaaatttgctcaa 426 |||||||||||||||||||| Sbjct: 77810 tgatgaacaaatttgctcaa 77791
>emb|CR376844.12| Zebrafish DNA sequence from clone DKEYP-51B7 in linkage group 8, complete sequence Length = 203472 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 tctgcagctgtacatgaccaaagg 161 ||||||||||||||||| |||||| Sbjct: 50777 tctgcagctgtacatgaacaaagg 50800
>emb|AL445703.4| Human DNA sequence from clone RP11-191J12 on chromosome 13, complete sequence Length = 83057 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 tgaacttgtccaaaatttga 127 |||||||||||||||||||| Sbjct: 10362 tgaacttgtccaaaatttga 10381
>emb|AL138916.14| Human DNA sequence from clone RP11-497D6 on chromosome 6q24.2-25.2 Contains the 3' end of the C6orf103 gene for chromosome 6 open reading frame 103, a novel pseudogene, a novel gene and the 3' end of a novel gene, complete sequence Length = 183115 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 tgtacatgaccaaaggagag 165 |||||||||||||||||||| Sbjct: 163559 tgtacatgaccaaaggagag 163578
>emb|BX510948.13| Zebrafish DNA sequence from clone DKEY-4E4 in linkage group 8, complete sequence Length = 124751 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 tgtttggagttcttttttctacat 278 |||||||| ||||||||||||||| Sbjct: 9718 tgtttggacttcttttttctacat 9695
>gb|AC160551.4| Mus musculus chromosome 5, clone RP23-296C20, complete sequence Length = 173331 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tgatgaacaaatttgctcaa 426 |||||||||||||||||||| Sbjct: 155960 tgatgaacaaatttgctcaa 155941
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 caaattcagttgctgatgat 249 |||||||||||||||||||| Sbjct: 8244 caaattcagttgctgatgat 8225
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project) Length = 88164 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 caaattcagttgctgatgat 249 |||||||||||||||||||| Sbjct: 40659 caaattcagttgctgatgat 40640
>gb|BC000022.2| Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 2, transcript variant 3, mRNA (cDNA clone MGC:787 IMAGE:3505936), complete cds Length = 2647 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 586 agacattgaacttgtccaaa 567
>gb|BC028385.2| Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 2, mRNA (cDNA clone MGC:33174 IMAGE:4816793), complete cds Length = 3877 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 568 agacattgaacttgtccaaa 549
>gb|AC125165.5| Mus musculus BAC clone RP24-429K13 from chromosome 16, complete sequence Length = 156815 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 atcatattgatgaacaaatt 419 |||||||||||||||||||| Sbjct: 37546 atcatattgatgaacaaatt 37565
>dbj|AK127259.1| Homo sapiens cDNA FLJ45326 fis, clone BRHIP3006786, highly similar to Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 2 (PPIL2) Length = 4213 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 647 agacattgaacttgtccaaa 628
>ref|NM_148175.1| Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 2 (PPIL2), transcript variant 2, mRNA Length = 2789 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 586 agacattgaacttgtccaaa 567
>ref|NM_148176.1| Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 2 (PPIL2), transcript variant 3, mRNA Length = 2648 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 587 agacattgaacttgtccaaa 568
>ref|NM_014337.2| Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 2 (PPIL2), transcript variant 1, mRNA Length = 2609 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 621 agacattgaacttgtccaaa 602
>emb|CR605739.1| full-length cDNA clone CS0DC011YP18 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1730 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 588 agacattgaacttgtccaaa 569
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gcaaattcagttgctgatga 248 |||||||||||||||||||| Sbjct: 1549544 gcaaattcagttgctgatga 1549525
>gb|AC090999.1| Caenorhabditis elegans cosmid Y82E9BR, complete sequence Length = 139291 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 tcaataaaatgaagtttttg 442 |||||||||||||||||||| Sbjct: 90503 tcaataaaatgaagtttttg 90484
>gb|AC171015.5| Gallus gallus BAC clone CH261-18L11 from chromosome ul, complete sequence Length = 215430 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cagtgatgctcctgcaggag 49 |||||||||||||||||||| Sbjct: 185192 cagtgatgctcctgcaggag 185211
>gb|AC009516.19| Homo sapiens chromosome 22 clone p393 map 22q11, complete sequence Length = 169237 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 160059 agacattgaacttgtccaaa 160040
>gb|AC018751.30| Homo sapiens clone b9j16, complete sequence Length = 166447 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 29330 agacattgaacttgtccaaa 29349
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 gaacaaatttgctcaataaa 430 |||||||||||||||||||| Sbjct: 10211877 gaacaaatttgctcaataaa 10211858
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgcaaattcagttgctgat 246 |||||||||||||||||||| Sbjct: 3586894 ttgcaaattcagttgctgat 3586913
>gb|AC008233.3|AC008233 Drosophila melanogaster, chromosome 2L, region 25C-25C, BAC clone BACR13M11, complete sequence Length = 162387 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tagtttatttgcgtgttaac 300 |||||||||||||||||||| Sbjct: 152342 tagtttatttgcgtgttaac 152323
>gb|AC010852.7|AC010852 Arabidopsis thaliana chromosome 1 BAC T12P18 genomic sequence, complete sequence Length = 79469 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cgcgaagacattgaacttgt 116 |||||||||||||||||||| Sbjct: 24718 cgcgaagacattgaacttgt 24699
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome IV, complete sequence Length = 94770 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 caaattcagttgctgatgat 249 |||||||||||||||||||| Sbjct: 40245 caaattcagttgctgatgat 40264
>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0675A05 Length = 131972 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ttgcaaattcagttgctgat 246 |||||||||||||||||||| Sbjct: 78731 ttgcaaattcagttgctgat 78750
>emb|BX649328.6| Zebrafish DNA sequence from clone DKEY-72L17 in linkage group 20, complete sequence Length = 224173 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 tgtttggagttcttttttctacat 278 |||||||| ||||||||||||||| Sbjct: 119168 tgtttggacttcttttttctacat 119145
>gb|AY891958.1| Synthetic construct Homo sapiens clone FLH018317.01L peptidylprolyl isomerase-like 2 (PPIL2) mRNA, partial cds Length = 1584 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 508 agacattgaacttgtccaaa 489
>gb|AY889495.1| Synthetic construct Homo sapiens clone FLH018321.01X peptidylprolyl isomerase-like 2 (PPIL2) mRNA, complete cds Length = 1584 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 508 agacattgaacttgtccaaa 489
>dbj|AK119065.2| Arabidopsis thaliana At1g63880 mRNA for putative disease resistance protein, complete cds, clone: RAFL21-41-E18 Length = 3339 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cgcgaagacattgaacttgt 116 |||||||||||||||||||| Sbjct: 131 cgcgaagacattgaacttgt 112
>emb|CR456548.1| Homo sapiens PPIL2 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.PPIL2) Length = 1723 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 540 agacattgaacttgtccaaa 521
>gb|AE003608.5| Drosophila melanogaster chromosome 2L, section 17 of 83 of the complete sequence Length = 174887 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 tagtttatttgcgtgttaac 300 |||||||||||||||||||| Sbjct: 154615 tagtttatttgcgtgttaac 154596
>emb|AL157917.1|SPAP27G11 S.pombe chromosome I P1 p27G11 Length = 29285 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 tttttctacatactagtttatttg 291 |||||||| ||||||||||||||| Sbjct: 2776 tttttctagatactagtttatttg 2799
>gb|AC005750.1|AC005750 Drosophila melanogaster DNA sequence (P1s DS03979 (D283) and DS01272 (D284)), complete sequence Length = 102516 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tagtttatttgcgtgttaac 300 |||||||||||||||||||| Sbjct: 84485 tagtttatttgcgtgttaac 84504
>gb|U37219.1|HSU37219 Human cyclophilin-like protein CyP-60 mRNA, complete cds Length = 2589 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 600 agacattgaacttgtccaaa 581
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 gaacaaatttgctcaataaa 430 |||||||||||||||||||| Sbjct: 10211759 gaacaaatttgctcaataaa 10211740
>emb|AL732643.6|CNS08C9I Oryza sativa chromosome 12, . BAC OSJNBa0094N04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 92382 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 gaacaaatttgctcaataaa 430 |||||||||||||||||||| Sbjct: 76079 gaacaaatttgctcaataaa 76060
>gb|AC154196.1| Mus musculus BAC clone RP24-76I6 from 16, complete sequence Length = 207701 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 atcatattgatgaacaaatt 419 |||||||||||||||||||| Sbjct: 42311 atcatattgatgaacaaatt 42292
>emb|CT010571.7| Mouse DNA sequence from clone RP23-300L8 on chromosome 16, complete sequence Length = 218760 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 atcatattgatgaacaaatt 419 |||||||||||||||||||| Sbjct: 109980 atcatattgatgaacaaatt 109999
>emb|AL772390.8| Mouse DNA sequence from clone RP23-446N8 on chromosome 4, complete sequence Length = 59040 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gcatgcacaaatcctgccca 400 |||||||||||||||||||| Sbjct: 179 gcatgcacaaatcctgccca 160
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcaaattcagttgctgatga 248 |||||||||||||||||||| Sbjct: 71339 gcaaattcagttgctgatga 71358
>dbj|AP000553.1| Homo sapiens genomic DNA, chromosome 22q11.2, BCRL2 region, clone:KB1440D3 Length = 164946 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agacattgaacttgtccaaa 121 |||||||||||||||||||| Sbjct: 87413 agacattgaacttgtccaaa 87394
>emb|AL772406.4| Mouse DNA sequence from clone RP23-321K16 on chromosome 4, complete sequence Length = 151744 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 gcatgcacaaatcctgccca 400 |||||||||||||||||||| Sbjct: 149923 gcatgcacaaatcctgccca 149904 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,487,787 Number of Sequences: 3902068 Number of extensions: 5487787 Number of successful extensions: 107632 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107263 Number of HSP's gapped (non-prelim): 366 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)