>FEN1_MOUSE (P39749) Flap endonuclease 1 (EC 3.1.-.-)|
          Length = 378

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 67  MCVLAGCDFLPSVPGIGTKRAYSLISKHKNID 162
           +C+L G D+  S+ GIG KRA  LI KHK+I+
Sbjct: 224 LCILLGSDYCESIRGIGAKRAVDLIQKHKSIE 255

>EXO1_XENLA (Q9W6K2) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)|
          Length = 734

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +1

Query: 67  MCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLVR 171
           MC+L+GCD+LPS+ GIG  +A  L+    N D+ +
Sbjct: 218 MCILSGCDYLPSIHGIGLAKACKLLKVANNPDITK 252

>FEN1_HUMAN (P39748) Flap endonuclease 1 (EC 3.1.-.-) (Maturation factor 1)|
           (MF1)
          Length = 380

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 67  MCVLAGCDFLPSVPGIGTKRAYSLISKHKNID 162
           +C+L G D+  S+ GIG KRA  LI KHK+I+
Sbjct: 226 LCILLGSDYCESIRGIGPKRAVDLIQKHKSIE 257

>EXO1_DROME (Q24558) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I) (Protein tosca)|
          Length = 732

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 67  MCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDL 165
           MC+L+GCD+L S+PGIG  +A   I K +  D+
Sbjct: 219 MCILSGCDYLDSLPGIGLAKACKFILKTEQEDM 251



 Score = 32.7 bits (73), Expect = 0.81
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 366 KRYSVPDDYIDSFWKTLAVFNHARVYDVKSKSLKHLKPLEE 488
           +   V DDYI++F K  A F H  +Y+   + ++ L  LE+
Sbjct: 265 RNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCALED 305

>FEN1A_ORYSA (Q9SXQ6) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a)|
          Length = 380

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +1

Query: 37  LTFSIFIWTGMCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLV 168
           LT   FI   +C+L+GCD+  S+ GIG + A  LI +H +I+ +
Sbjct: 219 LTMDQFI--DLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESI 260

>FEN1B_ORYSA (Q75LI2) Flap endonuclease 1b (EC 3.1.-.-) (OsFEN-1b)|
          Length = 412

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +1

Query: 37  LTFSIFIWTGMCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLV 168
           LT   FI   +C+L+GCD+  ++ GIG +RA  LI +H  I+ V
Sbjct: 219 LTMDQFI--DLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEV 260

>EXO1_MOUSE (Q9QZ11) Exonuclease 1 (EC 3.1.-.-) (mExo1) (Exonuclease I)|
          Length = 837

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +1

Query: 67  MCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLVR 171
           MC+L+GCD+L S+ GIG  +A  ++    N D+V+
Sbjct: 218 MCILSGCDYLASLRGIGLAKACKVLRLANNPDIVK 252

>EXO1_HUMAN (Q9UQ84) Exonuclease 1 (EC 3.1.-.-) (hExo1) (Exonuclease I) (hExoI)|
          Length = 846

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +1

Query: 67  MCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLVR 171
           MC+L+GCD+L S+ GIG  +A  ++    N D+V+
Sbjct: 218 MCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVK 252

>EXO1_BRARE (Q803U7) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)|
          Length = 806

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +1

Query: 67  MCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLVR 171
           MC+L+GCD+L S+ GIG  +A  L+    N D+++
Sbjct: 218 MCILSGCDYLQSLYGIGLGKACKLLRMANNPDILK 252

>RAD2_SCHPO (P39750) DNA-repair protein rad2|
          Length = 380

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 37  LTFSIFIWTGMCVLAGCDFLPSVPGIGTKRAYSLISKHKNID 162
           L  S+  +  +C+L GCD+   + G+G  RA  LI ++  +D
Sbjct: 217 LDMSVEQFVDLCILLGCDYCEPIRGVGPARAVELIRQYGTLD 258

>RAD27_YEAST (P26793) Structure-specific endonuclease RAD27|
          Length = 382

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 37  LTFSIFIWTGMCVLAGCDFLPSVPGIGTKRAYSLISKHKNIDLV 168
           L  +I  +  +C++ GCD+  S+ G+G   A  LI  H +I+ +
Sbjct: 214 LDLTIEQFVDLCIMLGCDYCESIRGVGPVTALKLIKTHGSIEKI 257

>EXO1_SCHPO (P53695) Exodeoxyribonuclease 1 (EC 3.1.-.-) (Exodeoxyribonuclease|
           I) (Exonuclease I) (EXO I)
          Length = 571

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 345 LSTLKLDKRYSVPDDYIDSFWKTLAVFNHARVYDVKSKSLKHLKPLE 485
           +  ++LDK   VP  +   F      F H RVY  K K+L HL P E
Sbjct: 252 IRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPPE 298

>FEN_PICTO (Q6L2I9) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 338

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 73  VLAGCDFLPSVPGIGTKRAYSLISKHKNI 159
           +L G DF P V GIG K A SLI K+ +I
Sbjct: 231 ILTGTDFNPGVKGIGAKTALSLIKKYNDI 259

>FEN_METKA (Q8TXU4) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 348

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +1

Query: 67  MCVLAGCDFLPS-VPGIGTKRAYSLISKHKNIDLVRN 174
           + +L G D+ P  VPGIG KRA  LI K+ ++D +++
Sbjct: 227 LAILLGTDYNPDGVPGIGPKRALQLIRKYGSLDELKD 263

>PLCE_MOUSE (Q9D1E8) 1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon (EC|
           2.3.1.51) (1-AGP acyltransferase 5) (1-AGPAT 5)
           (Lysophosphatidic acid acyltransferase-epsilon)
           (LPAAT-epsilon) (1-acylglycerol-3-phosphate
           O-acyltransferase 5)
          Length = 365

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 243 SAVINVVPSRYFKNSFILMRNMPP*HLSYNYWQVLSTLKLDKRYSVPDDYIDSFWKTLAV 422
           S V++    RY   S +L+ + P   L++  W+VLS L   + Y   DD +   ++ + +
Sbjct: 4   SLVLHTYSMRYLLPSVLLLGSAPTYLLAWTLWRVLSALMPARLYQRVDDRLYCVYQNMVL 63

Query: 423 F 425
           F
Sbjct: 64  F 64

>YAGG_SCHPO (Q09708) Hypothetical protein C12G12.16c in chromosome I|
          Length = 496

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 10  IDPPKFCFLLTFSIFIWTGMCVLAGCDFLPSVPGIGTKRAYSLISKHKN 156
           +DP K    L  +   +   C++ G DF   +P IG  RA  LI  + N
Sbjct: 349 MDPRKIAQELNLTFDGFQDYCLMCGTDFTSRIPKIGPVRALKLIRYYGN 397

>PLCE_HUMAN (Q9NUQ2) 1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon (EC|
           2.3.1.51) (1-AGP acyltransferase 5) (1-AGPAT 5)
           (Lysophosphatidic acid acyltransferase-epsilon)
           (LPAAT-epsilon) (1-acylglycerol-3-phosphate
           O-acyltransferase 5)
          Length = 364

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 243 SAVINVVPSRYFKNSFILMRNMPP*HLSYNYWQVLSTLKLDKRYSVPDDYIDSFWKTLAV 422
           S V++    RY   S +L+   P   L++  W++LS     + Y   DD +   ++++ +
Sbjct: 4   SLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQSMVL 63

Query: 423 F 425
           F
Sbjct: 64  F 64

>XRN2_HUMAN (Q9H0D6) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (DHM1-like protein)|
           (DHP protein)
          Length = 950

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 25  FCFLLTFSIFIWTGMCVLAGCDFLPSVPGIGTKR--AYSLISKHKNI 159
           F F +  SI  W  MC   G DFLP +P +  +      L++ +KN+
Sbjct: 324 FTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNV 370

>XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein Dhm1)|
          Length = 951

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 25  FCFLLTFSIFIWTGMCVLAGCDFLPSVPGIGTKRAY--SLISKHKNI 159
           F F +  SI  W  MC   G DFLP +P +  +      L++ +KN+
Sbjct: 324 FPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNV 370

>MQO_PROMP (Q7V2Q2) Probable malate:quinone oxidoreductase (EC 1.1.99.16)|
           (Malate dehydrogenase [acceptor]) (MQO)
          Length = 497

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 461 TETFKTFGGTIS*LLGGRPGYSWTVSLKSSVLFMSC 568
           TE   +  G++S LLG  PG S  VS+   VL  SC
Sbjct: 416 TEIVNSGDGSLSALLGASPGASTAVSIMIEVLKKSC 451


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,735,026
Number of Sequences: 219361
Number of extensions: 1676034
Number of successful extensions: 3807
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3807
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)