ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags33l17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC ... 96 5e-20
2RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC ... 94 3e-19
3RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC ... 89 9e-18
4YR104_MIMIV (Q5UPI0) Putative transposase R104 30 6.3
5KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1) 29 8.2

>RHM3_ARATH (Q9LH76) Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 664

 Score = 96.3 bits (238), Expect = 5e-20
 Identities = 44/59 (74%), Positives = 52/59 (88%)
 Frame = +1

Query: 25  YIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKPNQKT 201
           YI+P+F W NFNLEEQAKVIVAPRSNNE+D  KL  EFPE+LSIK+SLIK VF+PN++T
Sbjct: 606 YIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664



to top

>RHM1_ARATH (Q9SYM5) Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC|
           1.1.1.-)
          Length = 669

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 45/59 (76%), Positives = 49/59 (83%)
 Frame = +1

Query: 25  YIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKPNQKT 201
           YI+P F W NF LEEQAKVIVAPRSNNE+D  KLK EFPELLSIKESLIK  + PN+KT
Sbjct: 611 YINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669



to top

>RHM2_ARATH (Q9LPG6) Probable rhamnose biosynthetic enzyme 2 (EC 4.2.1.-) (EC|
           1.1.1.-) (RHAMNOSE BIOSYNTHESIS 2 protein) (NDP-rhamnose
           synthase) (MUCILAGE-MODIFIED4 protein) (UDP-L-rhamnose
           synthase MUM4)
          Length = 667

 Score = 89.0 bits (219), Expect = 9e-18
 Identities = 41/59 (69%), Positives = 49/59 (83%)
 Frame = +1

Query: 25  YIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFKPNQKT 201
           YI+P F W NF +EEQAKVIVA RSNNE+D  KL  EFPE+LSIKESL+K VF+PN++T
Sbjct: 609 YIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667



to top

>YR104_MIMIV (Q5UPI0) Putative transposase R104|
          Length = 545

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +1

Query: 7   WRCTGXYIDPNFSWKNFNLEEQAKVIVAPRSNNELDTVKLKTEFPELLSIKESLIKNVFK 186
           ++C   YI  N+   N  + +Q K    P+SNN   T K      +LL I++S  K   +
Sbjct: 38  FKCDNKYITFNYYSNNVPINDQLKFKDIPQSNN---TDKKNKLMDKLLKIEDSRYKKDIE 94

Query: 187 PNQKTSK 207
            N KT K
Sbjct: 95  SN-KTRK 100



to top

>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)|
          Length = 1097

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 379 IPCHYQIITQN-TTWCCYCIL*IRWEMDRVRNKVLCCIVLSH 501
           IP  ++ IT + T WCC+C   + W    VR K   C V+ H
Sbjct: 479 IPHRFEPITNHGTKWCCHCGYILPWGKKNVR-KCTECGVMCH 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,436,183
Number of Sequences: 219361
Number of extensions: 1842624
Number of successful extensions: 4016
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4016
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top