| Clone Name | bags33l04 |
|---|---|
| Clone Library Name | barley_pub |
>COBRA_ARATH (Q94KT8) COBRA protein precursor (Cell expansion protein)| Length = 456 Score = 219 bits (559), Expect = 2e-57 Identities = 91/120 (75%), Positives = 108/120 (90%) Frame = +2 Query: 62 YDSLDPTGNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMV 241 YD+LDP GNIT+KWD++SWTPDGYVA VTM+N+Q++RHI +PGW LGW WAKKEVIWSMV Sbjct: 37 YDALDPEGNITMKWDVMSWTPDGYVAVVTMFNFQKYRHIQSPGWTLGWKWAKKEVIWSMV 96 Query: 242 GAQTTEQGDCSKFKTNPPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVISTFNQDPGNAA 421 GAQTTEQGDCSK+K N PHCCK+DPTV+DLLPGTPY Q+ANCCKGGV++++ QDP AA Sbjct: 97 GAQTTEQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWVQDPATAA 156
>COBL2_ARATH (Q8L8Q7) COBRA-like protein 2 precursor| Length = 441 Score = 211 bits (536), Expect = 7e-55 Identities = 88/119 (73%), Positives = 102/119 (85%) Frame = +2 Query: 62 YDSLDPTGNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMV 241 YD+LDP GNITIKWDI+SWT DGYVA VT++N+QQ+RHI APGWQLGW+W KKEVIWSMV Sbjct: 29 YDALDPYGNITIKWDIMSWTGDGYVAVVTIFNFQQYRHIEAPGWQLGWSWMKKEVIWSMV 88 Query: 242 GAQTTEQGDCSKFKTNPPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVISTFNQDPGNA 418 G Q TEQGDCSKFK N PHCCK+ P ++DLLPGTPY Q++NCC+GGVIS + QDP A Sbjct: 89 GGQATEQGDCSKFKGNIPHCCKKTPAIVDLLPGTPYNQQISNCCRGGVISAWAQDPATA 147
>COBL4_ARATH (Q9LFW3) COBRA-like protein 4 precursor| Length = 431 Score = 209 bits (532), Expect = 2e-54 Identities = 91/119 (76%), Positives = 99/119 (83%) Frame = +2 Query: 62 YDSLDPTGNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMV 241 YD LDP+GNITIKWDI+SWT DGYVA VTM N+Q +RHI PGW LGWTWAKKEVIWSMV Sbjct: 21 YDPLDPSGNITIKWDIMSWTADGYVATVTMNNFQIYRHIQNPGWTLGWTWAKKEVIWSMV 80 Query: 242 GAQTTEQGDCSKFKTNPPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVISTFNQDPGNA 418 GAQTTEQGDCSKFK N PHCCK+ PTV+DLLPG PY Q +NCCKGGVI + QDP A Sbjct: 81 GAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVIGAWGQDPSAA 139
>COBL1_ARATH (Q9SRT7) COBRA-like protein 1 precursor| Length = 452 Score = 205 bits (521), Expect = 4e-53 Identities = 84/119 (70%), Positives = 102/119 (85%) Frame = +2 Query: 62 YDSLDPTGNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMV 241 YD LDP+GNIT+KWDII+WT DGYVA VT+YN+QQ+RHI APGW LGW+WAK+EVIW M Sbjct: 34 YDPLDPSGNITVKWDIITWTGDGYVATVTVYNFQQYRHIQAPGWTLGWSWAKREVIWGMN 93 Query: 242 GAQTTEQGDCSKFKTNPPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVISTFNQDPGNA 418 G QTTEQGDCSKFK PHCCK+ P+V+DLLPG+PY Q+ANCC+GGV++++ QDP A Sbjct: 94 GGQTTEQGDCSKFKGTIPHCCKKTPSVVDLLPGSPYNQQIANCCRGGVLNSWAQDPATA 152
>COBL5_ARATH (Q9FME5) COBRA-like protein 5 precursor| Length = 204 Score = 154 bits (388), Expect = 1e-37 Identities = 70/117 (59%), Positives = 85/117 (72%), Gaps = 5/117 (4%) Frame = +2 Query: 83 GNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMVGAQTTEQ 262 GNIT+KWD+++WTPDGYVA VT YNYQ+ R I PGW++ W KKEVIW+M+GA+TT Q Sbjct: 30 GNITVKWDLLNWTPDGYVAVVTAYNYQKQRSI--PGWKMSWRGTKKEVIWNMLGAKTTGQ 87 Query: 263 GDCSKFKTNPPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVI-----STFNQDPGNA 418 G CS FK N P C R PTV+DLLPGTP+ Q+ANCCK GV+ S F G+A Sbjct: 88 GGCSMFKGNIPQSCVRKPTVVDLLPGTPFNQQIANCCKSGVLKPGSESAFQLSVGSA 144
>COBL6_ARATH (O04500) COBRA-like protein 6 precursor| Length = 454 Score = 147 bits (370), Expect = 1e-35 Identities = 63/120 (52%), Positives = 83/120 (69%), Gaps = 2/120 (1%) Frame = +2 Query: 62 YDSLDPTGNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMV 241 YD LDP G I IKWD++ +P + VT+ N Q++RH+ PGW+L W W +EVIW M Sbjct: 36 YDPLDPFGKIIIKWDLLLSSPGQHHVQVTLENMQEYRHVEKPGWKLSWHWLNQEVIWDMK 95 Query: 242 GAQTTEQGDCSKFKT--NPPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVISTFNQDPGN 415 GA+TTEQG+CS F + N PHCC PT++DLLPG QVANCC+GGV+++ +QD N Sbjct: 96 GAETTEQGNCSAFASSGNLPHCCLERPTIVDLLPGASLNVQVANCCRGGVLTSMSQDHAN 155
>COBL7_ARATH (Q8GZ17) COBRA-like protein 7 precursor| Length = 661 Score = 58.2 bits (139), Expect = 8e-09 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 15/128 (11%) Frame = +2 Query: 83 GNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMVGA--QTT 256 G++TI +D++ Y+A VTM N+ + W+L + W + E I++M GA Sbjct: 217 GDLTIMYDVVRSYSSNYMAQVTMENHNPLGRLD--NWKLSFDWMRDEFIYTMKGAYPSIV 274 Query: 257 EQGDC---------SKFKTNPPHCCKRDPTVIDLLPGTPYKDQ----VANCCKGGVISTF 397 + DC + C R PTVID LP T Y D + CC+ G I Sbjct: 275 DSSDCVDGPQAKHYQDLDFSNVLSCARRPTVID-LPPTKYNDSTFGLIPFCCRNGTILPR 333 Query: 398 NQDPGNAA 421 + DP ++ Sbjct: 334 SMDPSKSS 341
>COBL9_ARATH (Q9FJ13) COBRA-like protein 9 precursor| Length = 663 Score = 48.9 bits (115), Expect = 5e-06 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 16/128 (12%) Frame = +2 Query: 83 GNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMVGAQTTEQ 262 G++TI +D+I Y+ VTM N+ + W+L + W + E I M GA T Sbjct: 216 GDLTIMYDVIRAYDQNYLTEVTMENHNPLGRLD--HWELSFDWMRDEFIQKMQGAYPTVV 273 Query: 263 GDCSKFKTNPPH------------CCKRDPTVIDLLPGTPYKD----QVANCCKGGVIST 394 D +K P C+R P +ID LP T D + +CC+ G I Sbjct: 274 -DATKCIFGPQSLIYTGLDFADVLTCERRPIIID-LPPTKKDDSTLGNIPSCCRNGTILP 331 Query: 395 FNQDPGNA 418 DP + Sbjct: 332 RIMDPSKS 339
>COBL8_ARATH (Q9LIB6) COBRA-like protein 8 precursor| Length = 653 Score = 48.9 bits (115), Expect = 5e-06 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 15/124 (12%) Frame = +2 Query: 83 GNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMVGA--QTT 256 G++TI +D+ Y A VT+ N+ + W L + W K E ++S GA Sbjct: 210 GDLTIMYDVTRAYQSSYSAQVTIENHNLLGRLD--NWDLSFMWMKDEFLFSTKGAYPSVV 267 Query: 257 EQGDC---------SKFKTNPPHCCKRDPTVIDLLPGTPYKD----QVANCCKGGVISTF 397 + DC + C R P +ID LP T Y D ++ CC+ G I Sbjct: 268 DSSDCITGPQAKYYKDLDFSNVMSCARRPHIID-LPLTKYNDTNVGRIPYCCRNGTILPR 326 Query: 398 NQDP 409 + DP Sbjct: 327 SMDP 330
>CBL11_ARATH (Q9T045) COBRA-like protein 11 precursor| Length = 668 Score = 46.2 bits (108), Expect = 3e-05 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 15/127 (11%) Frame = +2 Query: 83 GNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMVGAQTTEQ 262 G++ I +D++ Y+A VT+ N + W L W W + E I SM GA E+ Sbjct: 219 GDLNIIYDVLQAYASSYMAQVTIDNTSPLGRLDH--WNLTWEWMRGEFIHSMRGAYAAEK 276 Query: 263 G--DCSKFKTNPPH---------CCKRDPTVIDLLPGTPYKDQVAN----CCKGGVISTF 397 +C K + C++ P + D LP D V CCK G + Sbjct: 277 NTLECLSSKAGQFYGDLDFSQVANCQKKPIIKD-LPAERKDDNVTGKLPFCCKNGTLLPT 335 Query: 398 NQDPGNA 418 + DP + Sbjct: 336 HMDPSKS 342
>CBL10_ARATH (Q9LJU0) COBRA-like protein 10 precursor| Length = 672 Score = 39.7 bits (91), Expect = 0.003 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 14/126 (11%) Frame = +2 Query: 83 GNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMVGAQT--T 256 G++ I +D++ Y+A VT+ N + W L + W + E I +M GA T Sbjct: 229 GDLNIVYDVLQSFDSNYLAQVTIDNDNPLGRLDR--WNLTFEWMRGEFINTMRGAYTHKK 286 Query: 257 EQGDCSKFKTNPPH---------CCKRDPTVIDLLPGTPYKDQVAN---CCKGGVISTFN 400 + +C K + C+R P + DL P + CCK G + Sbjct: 287 DPSECLYSKAGQYYKDLDFSQVMNCQRKPAISDLPPEKKEDNMTGKLPFCCKNGTLLPPI 346 Query: 401 QDPGNA 418 DP + Sbjct: 347 MDPSKS 352
>NLTP_PYRCO (Q9M5X6) Nonspecific lipid-transfer protein precursor (LTP)| (Allergen Pyr c 3) Length = 115 Score = 32.7 bits (73), Expect = 0.36 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = +2 Query: 290 PPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVISTFNQDPGNA 418 PP CC T+ L TP + NC K S +PGNA Sbjct: 48 PPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNA 90
>XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein Dhm1)| Length = 951 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/67 (28%), Positives = 28/67 (41%) Frame = +2 Query: 212 AKKEVIWSMVGAQTTEQGDCSKFKTNPPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVIS 391 A KE + + V Q + +K PP K + PGT + D +A C + + Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180 Query: 392 TFNQDPG 412 N DPG Sbjct: 181 RLNNDPG 187
>XRN2_HUMAN (Q9H0D6) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (DHM1-like protein)| (DHP protein) Length = 950 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/67 (28%), Positives = 28/67 (41%) Frame = +2 Query: 212 AKKEVIWSMVGAQTTEQGDCSKFKTNPPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVIS 391 A KE + + V Q + +K PP K + PGT + D +A C + + Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD 180 Query: 392 TFNQDPG 412 N DPG Sbjct: 181 RLNNDPG 187
>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 255 PSRVTAPSLRPTLPIAAREIRPSSIFSRGHRTRTKSPTAAR 377 PS TAP RP P++ ++RP + +T ++ PT R Sbjct: 259 PSGDTAPPARPHTPLSRIDVRPPLDWGPQRQTLSRPPTPRR 299
>SYA_DEHE1 (Q3ZAE4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 871 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/73 (27%), Positives = 31/73 (42%) Frame = -2 Query: 402 WLNVLITPPLQQLATWSLYGVPGRRSMTVGSLLQQWGGLVLNLEQSPCSVV*APTMDQMT 223 W+ V + + +A W GVP R + +G+ WG + PCS + +M Sbjct: 121 WVTVYLDDD-EAIALWKEQGVPEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDFGQEMG 179 Query: 222 SFLAHVHPSCHPG 184 A +PSC G Sbjct: 180 CGKADCNPSCKCG 192
>NLTP1_PRUDU (Q43017) Nonspecific lipid-transfer protein 1 precursor (LTP 1)| Length = 117 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +2 Query: 290 PPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVISTFNQDPGNAA 421 PP CC V +L TP + NC K S +P NAA Sbjct: 50 PPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAA 93
>NLTP1_PRUPE (P81402) Nonspecific lipid-transfer protein 1 (LTP 1) (Major| allergen Pru p 3) (Pru p 1) Length = 91 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +2 Query: 290 PPHCCKRDPTVIDLLPGTPYKDQVANCCKGGVISTFNQDPGNAA 421 PP CC V +L TP + NC K S +P NAA Sbjct: 24 PPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAA 67
>MSRA_DICD3 (Q9ZEQ8) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 213 Score = 28.9 bits (63), Expect = 5.2 Identities = 10/42 (23%), Positives = 18/42 (42%) Frame = +2 Query: 173 HISAPGWQLGWTWAKKEVIWSMVGAQTTEQGDCSKFKTNPPH 298 H+ + +G W + + W G +T G C + NP + Sbjct: 43 HMEVAIFAMGCFWGVERLFWQQPGVYSTASGYCGGYTPNPTY 84
>LIN49_CAEEL (Q20318) Protein lin-49 (Abnormal cell lineage protein 49)| Length = 1042 Score = 28.9 bits (63), Expect = 5.2 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = -1 Query: 157 VVHCDSCNIAIRSPRYNVPF 98 +V+CD CN+++ Y +PF Sbjct: 212 IVYCDRCNLSVHQDCYGIPF 231
>BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like protein)| Length = 1058 Score = 28.5 bits (62), Expect = 6.7 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -1 Query: 160 VVVHCDSCNIAIRSPRYNVPF 98 V++ CD CN+A+ Y VP+ Sbjct: 230 VILFCDMCNLAVHQECYGVPY 250
>MYO1E_RAT (Q63356) Myosin Ie (Myosin heavy chain myr 3)| Length = 1107 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 Query: 246 LRPPSRVTAPSLRPTLPIAAREIRPSSIFSRGHRTRTKS 362 L+P ++V S+ P LP AR R +++ SRG+ T + Sbjct: 909 LKPSNKVLQVSIGPGLPKNARPTRRNTVSSRGYSGGTNN 947
>SYA_DEHSC (Q3ZWC3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 871 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/73 (26%), Positives = 30/73 (41%) Frame = -2 Query: 402 WLNVLITPPLQQLATWSLYGVPGRRSMTVGSLLQQWGGLVLNLEQSPCSVV*APTMDQMT 223 W+ V + + +A W GVP R + +G+ WG + PCS + + Sbjct: 121 WITVYLDDD-EAIALWKEQGVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDFGQETG 179 Query: 222 SFLAHVHPSCHPG 184 A +PSC G Sbjct: 180 CGKADCNPSCKCG 192
>PYP1_SCHPO (P27574) Tyrosine-protein phosphatase 1 (EC 3.1.3.48)| (Protein-tyrosine phosphatase 1) (PTPase 1) Length = 550 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 8/111 (7%) Frame = +2 Query: 77 PTGNITIKWDIISWTPDGYVAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWSMVGAQTT 256 P G+ T++ + PD + YQ+F + + Q + + + WS V + + Sbjct: 234 PFGSATVQTPCLHSVPDAFTNPDVATLYQKFLRLQSLEHQRLVSCSDRNSQWSTVDSLSN 293 Query: 257 EQGDCSKFKTNPPHCCKR------DPTVIDLLPGTPYKDQVAN--CCKGGV 385 +++ P+ C R P+ +D + + K + +N C+G + Sbjct: 294 TSYKKNRYTDIVPYNCTRVHLKRTSPSELDYINASFIKTETSNYIACQGSI 344
>BRPF3_HUMAN (Q9ULD4) Bromodomain and PHD finger-containing protein 3| Length = 1205 Score = 28.1 bits (61), Expect = 8.8 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -1 Query: 160 VVVHCDSCNIAIRSPRYNVPF 98 V++ CD CN+A+ Y VP+ Sbjct: 228 VILFCDICNLAVHQECYGVPY 248
>GLNA3_RHIME (O87393) Glutamine synthetase 3 (EC 6.3.1.2) (Glutamine synthetase| III) (Glutamate--ammonia ligase III) (GSIII) Length = 435 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 134 VAAVTMYNYQQFRHISAPGWQLGWTWAKKEVIWS 235 +AAVT ++ I+AP G TWA V W+ Sbjct: 278 LAAVTNPTVNSYKRINAPRTISGATWAPNSVTWT 311
>NLTP1_PRUAR (P81651) Nonspecific lipid-transfer protein 1 (LTP 1) (Major| allergen Pru ar 3) Length = 91 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = +2 Query: 290 PPHCCKRDPTVIDLLPGTPYKDQVANCCK--GGVISTFNQDPGNAA 421 PP CC V +L TP + NC K G IS N P NAA Sbjct: 24 PPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVN--PNNAA 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,226,782 Number of Sequences: 219361 Number of extensions: 1124337 Number of successful extensions: 3258 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3249 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)