ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags33k05 |
|---|---|
| Clone Library Name | barley_pub |
>RL18_ARATH (P42791) 60S ribosomal protein L18| Length = 187 Score = 116 bits (290), Expect = 2e-26 Identities = 53/62 (85%), Positives = 59/62 (95%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 ALRAP GQNT+LLRGPKN+REAV+HFG APGVPHSH+KPYVR+KGRKFEKARG+R SRGF Sbjct: 126 ALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGF 185 Query: 181 KV 186 KV Sbjct: 186 KV 187
>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)| Length = 183 Score = 107 bits (266), Expect = 1e-23 Identities = 52/62 (83%), Positives = 56/62 (90%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 ALR P +T+LLRGPKNAREAV+HFG APGVPHSHTKPYVRSKGRKFEKARGRR SRGF Sbjct: 123 ALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGF 181 Query: 181 KV 186 +V Sbjct: 182 RV 183
>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18| Length = 187 Score = 101 bits (252), Expect = 6e-22 Identities = 45/61 (73%), Positives = 51/61 (83%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 A+ P GQ T+LL GP+ ARE RHFGKAPG PHSHTKPY+RSKGRKFE+ARGRR SRG+ Sbjct: 126 AVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRGY 185 Query: 181 K 183 K Sbjct: 186 K 186
>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)| Length = 187 Score = 101 bits (251), Expect = 8e-22 Identities = 47/61 (77%), Positives = 51/61 (83%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 AL AP GQNT+LL GP+ ARE RHFGKAPG PHS TKPYV SKGRKFE+ARGRR SRG+ Sbjct: 126 ALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGRRASRGY 185 Query: 181 K 183 K Sbjct: 186 K 186
>RL18_RAT (P12001) 60S ribosomal protein L18| Length = 187 Score = 100 bits (250), Expect = 1e-21 Identities = 45/61 (73%), Positives = 51/61 (83%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 AL +P G+ T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+ Sbjct: 126 ALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGY 185 Query: 181 K 183 K Sbjct: 186 K 186
>RL18_MOUSE (P35980) 60S ribosomal protein L18| Length = 187 Score = 100 bits (250), Expect = 1e-21 Identities = 45/61 (73%), Positives = 51/61 (83%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 AL +P G+ T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+ Sbjct: 126 ALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGY 185 Query: 181 K 183 K Sbjct: 186 K 186
>RL18_ORENI (P69091) 60S ribosomal protein L18| Length = 187 Score = 100 bits (249), Expect = 1e-21 Identities = 46/61 (75%), Positives = 51/61 (83%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 AL +P GQ T+LL GP+ ARE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+ Sbjct: 126 ALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGY 185 Query: 181 K 183 K Sbjct: 186 K 186
>RL18_OREMO (P69090) 60S ribosomal protein L18| Length = 187 Score = 100 bits (249), Expect = 1e-21 Identities = 46/61 (75%), Positives = 51/61 (83%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 AL +P GQ T+LL GP+ ARE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+ Sbjct: 126 ALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGY 185 Query: 181 K 183 K Sbjct: 186 K 186
>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)| Length = 187 Score = 99.0 bits (245), Expect = 4e-21 Identities = 46/61 (75%), Positives = 50/61 (81%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 AL AP GQNT+LL GP+ ARE RHFGKAP PHS TKPYV SKGRKFE+ARGRR SRG+ Sbjct: 126 ALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGRRASRGY 185 Query: 181 K 183 K Sbjct: 186 K 186
>RL18_HUMAN (Q07020) 60S ribosomal protein L18| Length = 187 Score = 98.6 bits (244), Expect = 5e-21 Identities = 45/61 (73%), Positives = 50/61 (81%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 AL +P G T+LL GP+ RE RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+ Sbjct: 126 ALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGY 185 Query: 181 K 183 K Sbjct: 186 K 186
>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B| Length = 187 Score = 88.6 bits (218), Expect = 5e-18 Identities = 44/62 (70%), Positives = 48/62 (77%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 ALRAP G NT+LLRG K+AREA RHFG P H H PYVRS+GRKFE+ARGRR SR F Sbjct: 129 ALRAPTGSNTVLLRGKKHAREAYRHFGFGP---HKHKAPYVRSEGRKFERARGRRKSRAF 185 Query: 181 KV 186 KV Sbjct: 186 KV 187
>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A| Length = 187 Score = 87.4 bits (215), Expect = 1e-17 Identities = 43/62 (69%), Positives = 48/62 (77%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 ALRAP G NT+L+RG K+AREA RHFG P H H PYVRS+GRKFE+ARGRR SR F Sbjct: 129 ALRAPTGSNTVLVRGKKHAREAYRHFGFGP---HKHKAPYVRSEGRKFERARGRRKSRAF 185 Query: 181 KV 186 KV Sbjct: 186 KV 187
>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)| Length = 186 Score = 84.7 bits (208), Expect = 8e-17 Identities = 41/62 (66%), Positives = 48/62 (77%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 180 A+RAP GQNTL+LRGP+N+REAVRHFG PH P + S GRKFE+ARGRR S+GF Sbjct: 128 AVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGRRRSKGF 184 Query: 181 KV 186 KV Sbjct: 185 KV 186
>RL18_TRYBB (P50885) 60S ribosomal protein L18| Length = 193 Score = 65.1 bits (157), Expect = 6e-11 Identities = 30/57 (52%), Positives = 45/57 (78%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 171 A+ AP G+NT+LLRG K+ RE+V+HFG A GVP SH KP+V S+G++ +++ RR++ Sbjct: 134 AMMAPTGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKERQRSSKRRHA 189
>RL18_SALSA (P24558) 60S ribosomal protein L18| Length = 179 Score = 50.1 bits (118), Expect = 2e-06 Identities = 24/43 (55%), Positives = 29/43 (67%) Frame = +1 Query: 1 ALRAPXGQNTLLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 129 AL AP Q ++LL P+NAR+ RHF AP +P HTKPYV S Sbjct: 125 ALAAPNRQKSVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165
>MRE11_NEUCR (Q9C291) Double-strand break repair protein mus-23 (Recombinational| repair protein mus-23) Length = 760 Score = 32.0 bits (71), Expect = 0.58 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Frame = +1 Query: 67 VRHFGKAPGVPHSHTKPYVRSKGRK------FEKARGRRNSRGFKV*AVEFWAPSCRILL 228 V +FG+ P + H KP + KGR R R R F+ V F+ P+ + Sbjct: 166 VNYFGRVPEADNIHVKPILLQKGRTKMALYGLSNVRDERMHRTFRDNKVRFYRPNQQ--- 222 Query: 229 LSVYYHHLFGYQNHTA 276 + +++ L +QNH A Sbjct: 223 KNDWFNLLALHQNHYA 238
>Y1534_SYNY3 (P74220) Hypothetical protein slr1534| Length = 301 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = -3 Query: 168 VPPSSCLLEFPALGADIWLGVAVWHSWSFAKV-----PNSFPGVLGTPQEKR 28 V PS L E AD+ GV +W SW + + N F + GT Q++R Sbjct: 23 VSPSGSLREL----ADLQKGVDIWRSWGYEVIFSQGYHNRFGYLAGTDQQRR 70
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +1 Query: 43 GPKNAREAVRHFGKAPGVPHSHTKP 117 GPKN EAV G P VP T+P Sbjct: 440 GPKNLSEAVSSIGSLPPVPQQPTEP 464
>VG58_BPMD2 (O64249) Gene 58 protein (Gp58)| Length = 129 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/47 (25%), Positives = 21/47 (44%) Frame = +3 Query: 78 WQSSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLSCGILGTLVS 218 W + ++ +CP G E + QG L+CG+ G ++S Sbjct: 17 WDPPPDHYEWNKCLCPFHGDETPSAAVSYDLQGFNCLACGVRGDVIS 63
>VG58_BPML5 (Q05271) Gene 58 protein (Gp58)| Length = 130 Score = 29.3 bits (64), Expect = 3.7 Identities = 11/47 (23%), Positives = 22/47 (46%) Frame = +3 Query: 78 WQSSRSATQPHQAICPLQGQEIREGKRKEEQQGLQGLSCGILGTLVS 218 W+ + ++ +CP G E + QG ++CG+ G ++S Sbjct: 17 WEPPPDHHEWNKCLCPFHGDETPSAAVSYDLQGYNCMACGVRGDVIS 63
>Y107_NPVOP (O10346) Hypothetical 29.4 kDa protein (ORF107)| Length = 256 Score = 28.5 bits (62), Expect = 6.4 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Frame = -3 Query: 363 LQAWSQCCKTTKHELTGSENSLTQXTDI*SGMILVPKKVMIINR*QQNTT---RGCPKFH 193 LQ +++C + + +T + LT ++ + M + + + + N T RG F Sbjct: 127 LQHYNECLENLDNPVTDEHHLLTFGKEVATKMFIEAFEFSYASNNEINLTTNKRGSDLFD 186 Query: 192 SLNLEAPAVPPSSCLLE 142 + + APA PS+ LL+ Sbjct: 187 PIPMPAPAPAPSASLLD 203
>RPOC_PORCN (O33431) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1159 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 120 IWLGVAVWHSWSFAKVPNSFPGVLGTPQEK 31 I L V V H W F +PN +LG P +K Sbjct: 29 IALEVPVAHIWFFRSIPNKIAYLLGIPSKK 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,497,998 Number of Sequences: 219361 Number of extensions: 1220545 Number of successful extensions: 3608 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3503 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3601 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
