ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags33j02 |
|---|---|
| Clone Library Name | barley_pub |
>KU70_MOUSE (P23475) ATP-dependent DNA helicase 2 subunit 1 (EC 3.6.1.-)| (ATP-dependent DNA helicase II 70 kDa subunit) (Ku autoantigen protein p70 homolog) (Ku70) (CTC box-binding factor 75 kDa subunit) (CTCBF) (CTC75) (DNA-repair protein XRCC6) Length = 607 Score = 81.3 bits (199), Expect = 2e-15 Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 3/188 (1%) Frame = +2 Query: 20 RXMVVYLIDASPKMFTPANAAKADEKQETHFHTIVNCITQSLKTQIIGRSRDEVAICFFN 199 R +++L+DAS MF E + T F + CI ++II RD +A+ F+ Sbjct: 32 RDSLIFLVDASRAMFESQG-----EDELTPFDMSIQCIQSVYTSKIISSDRDLLAVVFYG 86 Query: 200 TKEKKNLQELAGVYAYNVTEREQLDRPDARLIKEFSCVEDSFMNNIGSRY---GITSGSR 370 T++ KN +Y + LD P A+ + E D F G ++ + GS Sbjct: 87 TEKDKNSVNFKNIYVL-----QDLDNPGAKRVLEL----DQFKGQQGKKHFRDTVGHGS- 136 Query: 371 ENTLYNALWVAQALLRKGSVKTVSKRILIFTNEDDPFGGITGAAKADMIRTTIQRAKDAK 550 + +L LWV L +K KRI++FTNEDDP G +AKA RT +A D + Sbjct: 137 DYSLSEVLWVCANLFSDVQLKMSHKRIMLFTNEDDPHG--RDSAKASRART---KASDLR 191 Query: 551 DLGLSIEL 574 D G+ ++L Sbjct: 192 DTGIFLDL 199
>KU70_HUMAN (P12956) ATP-dependent DNA helicase 2 subunit 1 (EC 3.6.1.-)| (ATP-dependent DNA helicase II 70 kDa subunit) (Lupus Ku autoantigen protein p70) (Ku70) (70 kDa subunit of Ku antigen) (Thyroid-lupus autoantigen) (TLAA) (CTC box-binding factor 75 Length = 608 Score = 78.6 bits (192), Expect = 1e-14 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 2/187 (1%) Frame = +2 Query: 20 RXMVVYLIDASPKMFTPANAAKADEKQETHFHTIVNCITQSLKTQIIGRSRDEVAICFFN 199 R +++L+DAS MF + E + T F + CI ++II RD +A+ F+ Sbjct: 34 RDSLIFLVDASKAMFESQS-----EDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYG 88 Query: 200 TKEKKNLQELAGVYAYNVTEREQLDRPDARLIKEFSCVEDSFMNNIGSR--YGITSGSRE 373 T++ KN +Y ++LD P A+ I E D F G + + + Sbjct: 89 TEKDKNSVNFKNIYVL-----QELDNPGAKRILEL----DQFKGQQGQKRFQDMMGHGSD 139 Query: 374 NTLYNALWVAQALLRKGSVKTVSKRILIFTNEDDPFGGITGAAKADMIRTTIQRAKDAKD 553 +L LWV L K KRI++FTNED+P G +AKA RT +A D +D Sbjct: 140 YSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHG--NDSAKASRART---KAGDLRD 194 Query: 554 LGLSIEL 574 G+ ++L Sbjct: 195 TGIFLDL 201
>KU70_CHICK (O93257) ATP-dependent DNA helicase 2 subunit 1 (EC 3.6.1.-)| (ATP-dependent DNA helicase II 70 kDa subunit) (Ku autoantigen protein p70 homolog) (Ku70) (DNA-repair protein XRCC6) Length = 632 Score = 75.9 bits (185), Expect = 8e-14 Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 2/187 (1%) Frame = +2 Query: 20 RXMVVYLIDASPKMFTPANAAKADEKQETHFHTIVNCITQSLKTQIIGRSRDEVAICFFN 199 R +++L+DAS MF P +E+ T F + CI ++II +D +++ F+ Sbjct: 56 RDSLIFLVDASKAMFEPYE----NEEAATPFDMTMQCIRNVYTSKIISSDKDLLSVVFYG 111 Query: 200 TKEKKNLQELAGVYAYNVTEREQLDRPDARLIKEFSCVEDSFMNNIGS-RYGITSG-SRE 373 + KN + +Y ++LD P A+ I E D + + G + T G + + Sbjct: 112 MENNKNSADFKHIYVL-----QELDNPGAKRILEL----DQYRGDEGRVLFRETFGHNAD 162 Query: 374 NTLYNALWVAQALLRKGSVKTVSKRILIFTNEDDPFGGITGAAKADMIRTTIQRAKDAKD 553 +L ALW L V+ KRI++FTNED+P +AKA + RT RA D +D Sbjct: 163 YSLGEALWACSNLFSDVRVRLSHKRIMLFTNEDNPHA--NDSAKAKLART---RAGDLRD 217 Query: 554 LGLSIEL 574 G+ ++L Sbjct: 218 TGIILDL 224
>KU70_RHIAP (Q26228) ATP-dependent DNA helicase 2 subunit 1 (EC 3.6.1.-)| (ATP-dependent DNA helicase II 70 kDa subunit) (Ku autoantigen protein p70 homolog) Length = 600 Score = 47.8 bits (112), Expect = 2e-05 Identities = 39/182 (21%), Positives = 72/182 (39%) Frame = +2 Query: 29 VVYLIDASPKMFTPANAAKADEKQETHFHTIVNCITQSLKTQIIGRSRDEVAICFFNTKE 208 +++LIDA+ MF + +T F + ++ +I +D V I F T + Sbjct: 29 ILFLIDATEGMFEEVDG-------DTAFMQCIKAAKSTMLNKITSSPKDLVGIILFGTDK 81 Query: 209 KKNLQELAGVYAYNVTEREQLDRPDARLIKEFSCVEDSFMNNIGSRYGITSGSRENTLYN 388 N VY + L+ P A + + + YG + + + + Sbjct: 82 DNNPNRFKNVYVL-----QDLESPGAESVLKLEKLIADGPKKFKQEYGHGNVN----MAD 132 Query: 389 ALWVAQALLRKGSVKTVSKRILIFTNEDDPFGGITGAAKADMIRTTIQRAKDAKDLGLSI 568 LW + K + +R+L+ TN+DDP G D+ + +AKD G+ + Sbjct: 133 VLWTCALMFSKS--RAGQRRVLVLTNQDDPHKG-----SGDLDDKAVVKAKDLLQSGIEL 185 Query: 569 EL 574 +L Sbjct: 186 DL 187
>YF19_SCHPO (O14293) Hypothetical aldehyde dehydrogenase-like protein C9E9.09c| (EC 1.2.1.-) Length = 503 Score = 33.9 bits (76), Expect = 0.34 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Frame = +2 Query: 248 NVTE-----REQLDRPDARLIKEFSCVEDSFMNNIGSRYGITSGSRENTLYNALWVAQAL 412 NVTE +E++ P +IK F +E++ S YG+ +G N + NA+ V+ AL Sbjct: 390 NVTEDMAVGKEEIFGPVLAVIK-FKTIEEAIRRGNNSTYGLAAGVHTNNITNAIKVSNAL 448 Query: 413 LRKGSVKTVSKRILIFTNEDDPFGG 487 TV + PFGG Sbjct: 449 ----EAGTVWVNCYNLLHHQIPFGG 469
>KU86_MOUSE (P27641) ATP-dependent DNA helicase 2 subunit 2 (EC 3.6.1.-)| (ATP-dependent DNA helicase II 80 kDa subunit) (Ku autoantigen protein p86 homolog) (Ku80) (CTC box-binding factor 85 kDa subunit) (CTCBF) (CTC85) (Nuclear factor IV) (DNA-repair pro Length = 731 Score = 33.1 bits (74), Expect = 0.58 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Frame = +2 Query: 98 QETHFHTIVNCITQSLKTQIIGRSRDEVAICFFNTKEKKNLQELAGVYAY-NVTEREQLD 274 +E+ +T ++ Q+ S+DE+A+ + T L+G Y N+T L Sbjct: 26 EESPIEQAKKVMTMFVQRQVFSESKDEIALALYGTDGTD--MPLSGKDQYQNITVCRHLM 83 Query: 275 RPDARLIKEFSCVEDSFMNNIGSRYGITSGSRENTLYNALWVAQALLRKGSV--KTVSKR 448 PD F +ED IG++ I S++ +AL V L+++ ++ K K Sbjct: 84 LPD------FDLLED-----IGNK--IQPSSQQADFLDALIVCMDLIQRETIGKKFGKKH 130 Query: 449 ILIFTNEDDPF 481 I +FT+ PF Sbjct: 131 IEVFTDLRSPF 141
>PGK_BACC1 (P62409) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 394 Score = 31.6 bits (70), Expect = 1.7 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = +2 Query: 272 DRPDARLIKEFSCVEDSFMNNIGSRYGITSGSRENT--LYNALWVAQALLRKGSVKTVSK 445 ++ DA L KEF+ + D F+N+ +G + +T + + L LL + + + K Sbjct: 124 EKNDAELAKEFAALADIFVND---AFGAAHRAHASTAGIADYLPAVSGLLMEKELDVLGK 180 Query: 446 RILIFTNEDDPFGGITGAAK 505 + +N D PF I G AK Sbjct: 181 AL---SNPDRPFTAIIGGAK 197
>OSTA_VIBF1 (Q5E862) Organic solvent tolerance protein precursor| Length = 786 Score = 31.6 bits (70), Expect = 1.7 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 15/79 (18%) Frame = +2 Query: 191 FFNTKEKKNLQELAGV------YAYNVTEREQLDRPDARLIKEFSCVEDSFMNNI----- 337 F +TKE + ++ L GV +++ +T +QL P++ K E + +N+ Sbjct: 700 FHDTKEDQMIEALVGVTYLSDCWSFGLTYSDQLIAPESA--KTIGTYEPEYESNLMLSIA 757 Query: 338 ----GSRYGITSGSRENTL 382 G+ GITSGS N L Sbjct: 758 IRGLGNNTGITSGSANNAL 776
>PGK_BACAN (Q81X75) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 394 Score = 30.8 bits (68), Expect = 2.9 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Frame = +2 Query: 272 DRPDARLIKEFSCVEDSFMNNIGSRYGITSGSRENT--LYNALWVAQALLRKGSVKTVSK 445 ++ DA L KEF+ + D F+N+ +G + +T + + L LL + ++ + K Sbjct: 124 EKNDAELAKEFAALADIFVND---AFGAAHRAHASTAGIADYLPAVSGLLMEKELEVLGK 180 Query: 446 RILIFTNEDDPFGGITGAAK 505 + +N + PF I G AK Sbjct: 181 AL---SNPERPFTAIIGGAK 197
>DCD_HELPY (O25136) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 188 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +2 Query: 38 LIDASPKMFTPANAAKADEKQETHFHTIVNCITQSLKTQIIGRSRDEVAIC 190 LID PK F P NA K D +E +F N + + +D +AIC Sbjct: 58 LID--PKNFDPNNATKIDASKEGYFILPANAFALAHTIEYFKMPKDTLAIC 106
>YDB4_SCHPO (Q10357) Hypothetical protein C22E12.04 in chromosome I| Length = 297 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -2 Query: 496 SSNTTKRIILIGEYEDSLTHSLHRSFAQQCLCNPKSIVQGILSRSRG 356 +SN +I+L E SL + + F +C+ + S GI+SRS G Sbjct: 147 NSNEQGKIVLDKEVSGSLPNWIGHCFVLKCVDDSDSATMGIISRSAG 193
>DCD_HELPJ (Q9ZKD0) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 188 Score = 29.3 bits (64), Expect = 8.4 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = +2 Query: 38 LIDASPKMFTPANAAKADEKQETHFHTIVNCITQSLKTQIIGRSRDEVAIC 190 LID PK F P NA K D +E F N + + +D +AIC Sbjct: 58 LID--PKNFDPNNATKIDASKEGFFILPANAFALAHTIEYFKMPKDTLAIC 106
>CARB_METMA (P58944) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1073 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/62 (30%), Positives = 31/62 (50%) Frame = +2 Query: 113 HTIVNCITQSLKTQIIGRSRDEVAICFFNTKEKKNLQELAGVYAYNVTEREQLDRPDARL 292 H + + ++T II + + V+ F +T +K + L Y NV ERE RPD L Sbjct: 570 HAVTALREEGIETHIINNNPETVSTDF-DTSDKLFFEPLTMEYVMNVIERE---RPDGVL 625 Query: 293 IK 298 ++ Sbjct: 626 VQ 627
>CARB_METAC (Q8TNY4) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1070 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/62 (30%), Positives = 31/62 (50%) Frame = +2 Query: 113 HTIVNCITQSLKTQIIGRSRDEVAICFFNTKEKKNLQELAGVYAYNVTEREQLDRPDARL 292 H + + ++T II + + V+ F +T +K + L Y NV ERE RPD L Sbjct: 570 HAVTALREEGIETHIINNNPETVSTDF-DTSDKLFFEPLTMEYVMNVIERE---RPDGVL 625 Query: 293 IK 298 ++ Sbjct: 626 VQ 627 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,084,729 Number of Sequences: 219361 Number of extensions: 1560103 Number of successful extensions: 4054 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3943 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4051 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
