ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags33h03 |
|---|---|
| Clone Library Name | barley_pub |
>DNAA_LEIXX (Q6AHN6) Chromosomal replication initiator protein dnaA| Length = 473 Score = 32.3 bits (72), Expect = 0.86 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Frame = +2 Query: 2 AKQSKISTSNGLKEVVGSDVFSASDLREERREAINIQGTAGLSSTPCDVPQRQGVRRKLV 181 A+ KI + + E + S + +S++RE I + A L+ TP D+P Q V + L+ Sbjct: 312 AQSEKIQVPDDILEFMASKI--SSNIRELEGTLIRVTAFASLNRTPVDMPLVQTVLKDLI 369 Query: 182 R---NGCISPSSIV 214 + I+P+ I+ Sbjct: 370 TLDDDNVIAPTDII 383
>AMPL_YEAST (P14904) Vacuolar aminopeptidase 1 precursor (EC 3.4.11.22)| (Vacuolar aminopeptidase I) (Polypeptidase) (Leucine aminopeptidase IV) (LAPIV) (Aminopeptidase III) (Aminopeptidase yscI) Length = 514 Score = 30.4 bits (67), Expect = 3.3 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = +2 Query: 347 KNGASVNYMETTASARAGGTLIPQGANQPSSSNCSEGLNNKGKEIIHHVVGTERAG 514 +NG V Y + ++R+GGT+ P A+Q + G+ I G++ G Sbjct: 436 RNGDKVQYFQIKNNSRSGGTIGPSLASQTGARTIDLGIAQLSMHSIRAATGSKDVG 491
>PCDB3_PANTR (Q5DRD1) Protocadherin beta 3 precursor (PCDH-beta3)| Length = 796 Score = 30.4 bits (67), Expect = 3.3 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Frame = +2 Query: 236 EKEEMCSTNG---VHYR----NPQDDVFHTETIIDLTDKSPTITKNGASVNYMETTASAR 394 ++EE+C +H++ NP V + IID+ D SP +N + +E+T Sbjct: 91 DREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPVFFENEMHLKILESTLP-- 148 Query: 395 AGGTLIPQG 421 GT+IP G Sbjct: 149 --GTVIPLG 155
>PCDB3_HUMAN (Q9Y5E6) Protocadherin beta 3 precursor (PCDH-beta3)| Length = 796 Score = 30.4 bits (67), Expect = 3.3 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Frame = +2 Query: 236 EKEEMCSTNG---VHYR----NPQDDVFHTETIIDLTDKSPTITKNGASVNYMETTASAR 394 ++EE+C +H++ NP V + IID+ D SP +N + +E+T Sbjct: 91 DREELCGPTEPCILHFQILLQNPLQFVTNELRIIDVNDHSPVFFENEMHLKILESTLP-- 148 Query: 395 AGGTLIPQG 421 GT+IP G Sbjct: 149 --GTVIPLG 155
>SIG12_PANTR (Q95LH0) Sialic acid-binding Ig-like lectin 12 precursor| (Siglec-12) (Sialic acid-binding Ig-like lectin-like 1) (Siglec-L1) Length = 597 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +2 Query: 335 PTITKNGASVNYMETTASARAGGTLIPQGANQPSSSNCSEGLNNKG 472 PTIT GASV+ +E T S + +LIP+ + +S C L G Sbjct: 307 PTITWMGASVSSLEPTISRSSMLSLIPKPQDHGTSLTCQVTLPGAG 352
>DHE2_PORGI (Q03578) NAD-specific glutamate dehydrogenase (EC 1.4.1.2)| (NAD-GDH) (Surface-associated protein PGAG1) Length = 445 Score = 30.0 bits (66), Expect = 4.3 Identities = 19/85 (22%), Positives = 30/85 (35%) Frame = +2 Query: 242 EEMCSTNGVHYRNPQDDVFHTETIIDLTDKSPTITKNGASVNYMETTASARAGGTLIPQG 421 + MC NGV Y+ T I + + + + + T S G P G Sbjct: 216 QNMCKQNGVDYKGK------TLAISGFGNVAWGVAQKATELGIKVVTISGPDGYVYDPDG 269 Query: 422 ANQPSSSNCSEGLNNKGKEIIHHVV 496 N P C L + G +++ V Sbjct: 270 INTPEKFRCMLDLRDSGNDVVSDYV 294
>SIG12_HUMAN (Q96PQ1) Sialic acid-binding Ig-like lectin 12 precursor| (Siglec-12) (Sialic acid-binding Ig-like lectin-like 1) (Siglec-L1) Length = 595 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 335 PTITKNGASVNYMETTASARAGGTLIPQGANQPSSSNCSEGLNNKG 472 PTIT GASV+ ++ T + + +LIPQ + +S C L G Sbjct: 305 PTITWMGASVSSLDPTITRSSMLSLIPQPQDHGTSLTCQVTLPGAG 350
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein| Length = 1723 Score = 29.6 bits (65), Expect = 5.6 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 1/120 (0%) Frame = +2 Query: 128 SSTPCDVPQRQGVRRKLVRNGCISPSSIVKRRVIADEKEEMCSTNGVHYRNPQDDVFHTE 307 +S P +P+ + V NG I S + K + + + PQD +F Sbjct: 802 NSEPLVMPEINDKENRDVTNGGIKRSRLEKSALFSSLLSSL----------PQDKIF--- 848 Query: 308 TIIDLTDKSPTITKNGASVNYMETTASARAGGTLIPQGANQPSSSNCSE-GLNNKGKEII 484 SP++T SVN M T S G+L +QP++ GLN + ++ Sbjct: 849 --------SPSVT----SVNTMTTAFSTSQNGSLSQSSVSQPTTEGAPPCGLNKEQSNLL 896
>YEX8_SCHPO (O13859) Uncharacterized protein SPAC1A6.08c| Length = 285 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 15/66 (22%) Frame = +2 Query: 233 DEKEEMCSTNGV---------------HYRNPQDDVFHTETIIDLTDKSPTITKNGASVN 367 DEKE + + + V +++N D + ET++D DK P++ + S Sbjct: 205 DEKETLAALDNVKLSDENAAHLGYLVKYFQNYTDKIILKETLMDWEDKEPSLQELTESTK 264 Query: 368 YMETTA 385 Y+E A Sbjct: 265 YLENLA 270
>HSF8_LYCPE (P41153) Heat shock factor protein HSF8 (Heat shock transcription| factor 8) (HSTF 8) (Heat stress transcription factor) Length = 527 Score = 29.3 bits (64), Expect = 7.3 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +2 Query: 380 TASARAGGTLIPQGANQPSS--SNCSEGLNNKGKEIIHHVVGTE 505 TASA AG +L+P + SS CSE +NN+ II V G + Sbjct: 348 TASAIAGQSLLPATSEMQSSHLGTCSEIINNQLSNIIPLVGGED 391
>HSF8_LYCES (Q40152) Heat shock factor protein HSF8 (Heat shock transcription| factor 8) (HSTF 8) (Heat stress transcription factor) Length = 527 Score = 29.3 bits (64), Expect = 7.3 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +2 Query: 380 TASARAGGTLIPQGANQPSS--SNCSEGLNNKGKEIIHHVVGTE 505 TASA AG +L+P + SS CSE +NN+ II V G + Sbjct: 346 TASAIAGQSLLPATSEMQSSHLGTCSEIINNQLSNIIPLVGGED 389
>VE2_HPV48 (Q80923) Regulatory protein E2| Length = 396 Score = 29.3 bits (64), Expect = 7.3 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +2 Query: 53 SDVFSASDLREERREAINIQGTAGLSSTPCDVPQRQGVRRKLVRNGCISPSSIVKR 220 S S S LRE RR GT + P+R+G +RKL + +PS + R Sbjct: 244 SPTSSTSRLRERRRREPRESGTTDTT------PRRRGTKRKLGSDSAPTPSEVGSR 293
>UBR1_MOUSE (O70481) Ubiquitin-protein ligase E3 component N-recognin-1 (EC| 6.-.-.-) (Ubiquitin-protein ligase E3-alpha-1) (Ubiquitin-protein ligase E3-alpha-I) Length = 1757 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -1 Query: 530 SSYQPLQPAQFPQHDG*FLCPCCLNLQNSYCCLVDLHPVELES 402 SS Q + F G +LCP C +L N+ ++ L P ++ S Sbjct: 1181 SSQQRIHVDLFDLESGEYLCPLCKSLCNTVIPIIPLQPQKINS 1223
>SARDH_MOUSE (Q99LB7) Sarcosine dehydrogenase, mitochondrial precursor (EC| 1.5.99.1) (SarDH) Length = 919 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = +2 Query: 323 TDKSPTITKNGASVNYMETTASARAGGTLIPQGANQPSSSNCSE---GLNNKGKEIIHHV 493 T+ PT K SV Y T G +++PQG +QP S + G + G + ++H+ Sbjct: 30 TEARPTTEK---SVPYQRTLKEEAQGASVVPQGPSQPLPSTANVVVIGGGSLGCQTLYHL 86
>UBR1_HUMAN (Q8IWV7) Ubiquitin-protein ligase E3 component N-recognin-1 (EC| 6.-.-.-) (Ubiquitin-protein ligase E3-alpha-1) (Ubiquitin-protein ligase E3-alpha-I) Length = 1749 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -1 Query: 530 SSYQPLQPAQFPQHDG*FLCPCCLNLQNSYCCLVDLHPVELES 402 SS Q + F G +LCP C +L N+ ++ L P ++ S Sbjct: 1178 SSQQRIHVDLFDLESGEYLCPLCKSLCNTVIPIIPLQPQKINS 1220
>DNAK_HALME (Q9HHB9) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 625 Score = 29.3 bits (64), Expect = 7.3 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 19/146 (13%) Frame = +2 Query: 65 SASDLREERREAINIQGTAGLSSTPCDVPQRQG--------VRRKLVRNGCISPSSIVKR 220 SA D E+I I+G AGLS D QR+ RR+ V + ++ + Sbjct: 461 SAEDKGSGNAESITIEGGAGLSDDEIDRMQREAEQHAEEDKERRRAVEARNEAEGAVQRA 520 Query: 221 RVIADEKEE----------MCSTNGVHYRNPQDDVFHTETIIDLT-DKSPTITKNGASVN 367 + +E EE + V DD T+ + D+T D S + + G + Sbjct: 521 ETLLEENEENVDDELRADIEAAIEDVEAVLEDDDA-STDELEDVTEDLSKELQEIGKRM- 578 Query: 368 YMETTASARAGGTLIPQGANQPSSSN 445 + A A+AGG P GA P ++ Sbjct: 579 -YQQQAQAQAGG---PGGAGGPGGAD 600
>ZN592_MOUSE (Q8BHZ4) Zinc finger protein 592 (Zfp-592)| Length = 1262 Score = 28.9 bits (63), Expect = 9.5 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 3/100 (3%) Frame = +2 Query: 242 EEMCSTNGVHYRNPQDDVFHTETIIDLTDKSPTITKNGASV---NYMETTASARAGGTLI 412 EE S G+H +PQ D E +I +D S +G+ V + + + AS + T Sbjct: 430 EEHFSEAGIHSGSPQGDRKGDENMIKTSDSSSPCRISGSRVPKGSALNSQASKKQQST-A 488 Query: 413 PQGANQPSSSNCSEGLNNKGKEIIHHVVGTERAGEADTMR 532 PQ A+ P++S + ++ ++ H V ++ R Sbjct: 489 PQ-ASTPAASLLPKAVHLANLNLVPHSVAASVTAKSSAQR 527
>PMP21_CHLPN (Q9Z6U5) Probable outer membrane protein pmp21 precursor (Polymorphic| membrane protein 21) Length = 1609 Score = 28.9 bits (63), Expect = 9.5 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Frame = +2 Query: 107 IQGTAGLSSTPCDVPQRQGV--RRKLVRNGCISPSSIVKRRVIADEKEEMCSTNGVHYRN 280 + G A LS+ +V Q V + NGC S +I+ ++V ++ + + V + + Sbjct: 732 VGGGALLSTNEVNVCSNQNVVFSDNVTSNGCDSGGAILAKKV------DISANHSVEFVS 785 Query: 281 PQDDVFHTETIIDLTDKSPTITKNGASVNYMETTASARAGGTLIPQGA 424 F + ++S IT NG++V++ + G PQG+ Sbjct: 786 NGSGKFGGA--VCALNESVNITDNGSAVSFSKNRTRLGGAGVAAPQGS 831 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,083,838 Number of Sequences: 219361 Number of extensions: 1543813 Number of successful extensions: 4064 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3983 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4063 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
